Additional file 2: of High-quality genetic mapping with ddRADseq in the non-model tree Quercus rubra

  • Arpita Konar (Creator)
  • Olivia Choudhury (Creator)
  • Rebecca Bullis (Creator)
  • Lauren Fiedler (Creator)
  • Jacqueline M. Kruser (Northwestern University) (Creator)
  • Melissa T. Stephens (Creator)
  • Oliver Gailing (Creator)
  • Scott E. Schlarbaum (Creator)
  • Mark V. Coggeshall (Creator)
  • Margaret E. Staton (Creator)
  • John E. Carlson (Creator)
  • Scott Emrich (Creator)
  • Jeanne Romero-Severson (Creator)

Dataset

Description

Performance of SNP variant callers with two methods of de novo reference construction. Tabular data shows how the number of SNP markers generated by SAMtools and HaplotypeCaller changed after elimination of the SNPs with 30% or more missing genotypes for each of the three marker categories possible with SNPs and informative for mapping in F1 of outcrossing parents. (XLSX 9Â kb)
Date made available2017
Publisherfigshare

Access Dataset

  • High-quality genetic mapping with ddRADseq in the non-model tree Quercus rubra

    Konar, A., Choudhury, O., Bullis, R., Fiedler, L., Kruser, J. M., Stephens, M. T., Gailing, O., Schlarbaum, S., Coggeshall, M. V., Staton, M. E., Carlson, J. E., Emrich, S. & Romero-Severson, J., May 30 2017, In: BMC Genomics. 18, 1, 417.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    30 Scopus citations

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