Biochemistry and Molecular Genetics

Search results

• Additional file 1: of Tenascin-C expression contributes to pediatric brainstem glioma tumor phenotype and represents a novel biomarker of disease

  Qi, J. (Contributor), Esfahani, D. R. (Contributor), Huang, T. (Contributor), Ozark, P. (Contributor), Bartom, E. (Contributor), Hashizume, R. (Contributor), Bonner, E. R. (Contributor), An, S. (Contributor), Horbinski, C. M. (Contributor), James, C. D. (Contributor) & Saratsis, A. M. (Contributor), figshare, 2019

  DOI: 10.6084/m9.figshare.8135906, https://springernature.figshare.com/articles/Additional_file_1_of_Tenascin-C_expression_contributes_to_pediatric_brainstem_glioma_tumor_phenotype_and_represents_a_novel_biomarker_of_disease/8135906

  Dataset

• ASXL3 bridges BRD4 to BAP1 complex and governs enhancer activity in small cell lung cancer

  Szczepanski, A. P. (Creator), Zhao, Z. (Contributor), Sosnowski, T. (Creator), Goo, Y. A. (Creator), Bartom, E. T. (Creator) & Wang, L. (Creator), figshare, 2020

  DOI: 10.6084/m9.figshare.c.5063824.v1, https://springernature.figshare.com/collections/ASXL3_bridges_BRD4_to_BAP1_complex_and_governs_enhancer_activity_in_small_cell_lung_cancer/5063824/1

  Dataset

• Additional file 6 of ASXL3 bridges BRD4 to BAP1 complex and governs enhancer activity in small cell lung cancer

  Szczepanski, A. P. (Creator), Zhao, Z. (Contributor), Sosnowski, T. (Creator), Goo, Y. A. (Creator), Bartom, E. T. (Creator) & Wang, L. (Creator), figshare, 2020

  DOI: 10.6084/m9.figshare.12660925, https://springernature.figshare.com/articles/Additional_file_6_of_ASXL3_bridges_BRD4_to_BAP1_complex_and_governs_enhancer_activity_in_small_cell_lung_cancer/12660925

  Dataset

• Crystal structure of human Ash2L (SPRY domain and SDI motif) in complex with full length DPY-30

  Haddad, J. F. (Contributor), Yang, Y. (Contributor), Takahashi, Y.-H. (Contributor), Joshi, M. (Contributor), Chaudhary, N. (Contributor), Woodfin, A. R. (Contributor), Benyoucef, A. (Contributor), Yeung, S. (Contributor), Brunzelle, J. S. (Contributor), Skiniotis, G. (Contributor), Brand, M. (Contributor), Shilatifard, A. (Contributor) & Couture, J.-F. (Contributor), Protein Data Bank (PDB), Aug 8 2018

  DOI: 10.2210/pdb6E2H/pdb, https://www.wwpdb.org/pdb?id=pdb_00006e2h

  Dataset

• Data from: Set1/COMPASS and Mediator are repurposed to promote epigenetic transcriptional memory

  D’Urso, A. (Contributor), Takahashi, Y.-H. (Creator), Xiong, B. (Creator), Marone, J. (Creator), Coukos, R. (Creator), Randise-Hinchliff, C. (Creator), Wang, J.-P. (Creator), Shilatifard, A. (Creator) & Brickner, J. H. (Creator), Dryad, Jul 7 2016

  DOI: 10.5061/dryad.93fv2, https://datadryad.org/stash/dataset/doi:10.5061/dryad.93fv2

  Dataset

• Crystal structure of Ash2L SPRY domain in complex with RbBP5

  Zhang, P. (Contributor), Chaturvedi, C.-P. (Contributor), Tremblay, V. (Contributor), Cramet, M. (Contributor), Brunzelle, J. S. (Contributor), Skiniotis, G. (Contributor), Brand, M. (Contributor), Shilatifard, A. (Contributor) & Couture, J.-F. (Contributor), Protein Data Bank (PDB), Jan 28 2015

  DOI: 10.2210/pdb4X8P/pdb, https://www.wwpdb.org/pdb?id=pdb_00004x8p

  Dataset

• Subtype-associated epigenomic landscape and 3D genome structure in bladder cancer

  Iyyanki, T. (Creator), Zhang, B. (Creator), Wang, Q. (Creator), Hou, Y. (Creator), Jin, Q. (Creator), Xu, J. (Creator), Yang, H. (Creator), Liu, T. (Creator), Wang, X. (Creator), Song, F. (Creator), Luan, Y. (Creator), Yamashita, H. (Creator), Chien, R. (Creator), Lyu, H. (Creator), Zhang, L. (Creator), Wang, L. (Creator), Warrick, J. (Creator), Raman, J. D. (Creator), Meeks, J. J. (Creator), DeGraff, D. J. (Creator) & Yue, F. (Creator), figshare, 2021

  DOI: 10.6084/m9.figshare.c.5391260.v1, https://springernature.figshare.com/collections/Subtype-associated_epigenomic_landscape_and_3D_genome_structure_in_bladder_cancer/5391260/1

  Dataset

• Cancer-specific CTCF binding facilitates oncogenic transcriptional dysregulation

  Fang, C. (Contributor), Wang, Z. (Contributor), Han, C. (Contributor), Safgren, S. L. (Creator), Helmin, K. A. (Creator), Adelman, E. R. (Creator), Serafin, V. (Creator), Basso, G. (Creator), Eagen, K. P. (Creator), Gaspar-Maia, A. (Creator), Figueroa, M. E. (Creator), Singer, B. D. (Creator), Ratan, A. (Contributor), Ntziachristos, P. (Creator) & Zang, C. (Creator), figshare, 2020

  DOI: 10.6084/m9.figshare.c.5122871.v1, https://springernature.figshare.com/collections/Cancer-specific_CTCF_binding_facilitates_oncogenic_transcriptional_dysregulation/5122871/1

  Dataset

• Supplementary material from "Metabolic basis of brain-like electrical signalling in bacterial communities"

  Martinez-Corral, R. (Creator), Liu, J. (Contributor), Prindle, A. (Creator), Süel, G. M. (Creator), Garcia-Ojalvo, J. (Creator) & Jintao, L. (Contributor), figshare, 2019

  DOI: 10.6084/m9.figshare.c.4441778.v2, https://rs.figshare.com/collections/Supplementary_material_from_Metabolic_basis_of_brain-like_electrical_signalling_in_bacterial_communities_/4441778/2

  Dataset

• Thrombocorticin in complex with Ca2+ and fucose

  Watari, H. (Contributor), Kageyama, H. (Contributor), Masubuchi, N. (Contributor), Nakajima, H. (Contributor), Onodera, K. (Contributor), Focia, P. J. (Contributor), Oshiro, T. (Contributor), Matsui, T. (Contributor), Kodera, Y. (Contributor), Ogawa, T. (Contributor), Yokoyama, T. (Contributor), Hirayama, M. (Contributor), Hori, K. (Contributor), Freymann, D. M. (Contributor), Imai, M. (Contributor), Komatsu, N. (Contributor), Araki, M. (Contributor), Tanaka, Y. (Contributor) & Sakai, R. (Contributor), Protein Data Bank (PDB), Jul 6 2022

  DOI: 10.2210/pdb7F9G/pdb, https://www.wwpdb.org/pdb?id=pdb_00007f9g

  Dataset

• 2GSD : NAD-dependent formate dehydrogenase from bacterium Moraxella sp.C2 in complex with NAD and azide

  Shabalin, I. G. (Contributor), Filippova, E. V. (Contributor), Polyakov, K. M. (Contributor), Tikhonova, T. V. (Contributor), Tishkov, V. I. (Contributor) & Popov, V. O. (Contributor), RCSB-PDB, 2006

  DOI: 10.2210/pdb2gsd/pdb, https://www.rcsb.org/structure/2GSD

  Dataset

• Myometrial oxidative stress drives MED12 mutations in leiomyoma

  Li, Y. (Creator), Xu, X. (Creator), Asif, H. (Creator), Feng, Y. (Creator), Kohrn, B. F. (Creator), Kennedy, S. R. (Creator), Kim, J. J. (Creator) & Wei, J.-J. (Creator), figshare, 2022

  DOI: 10.6084/m9.figshare.c.6113616, https://springernature.figshare.com/collections/Myometrial_oxidative_stress_drives_MED12_mutations_in_leiomyoma/6113616

  Dataset

• Additional file 2 of Myometrial oxidative stress drives MED12 mutations in leiomyoma

  Li, Y. (Creator), Xu, X. (Creator), Asif, H. (Creator), Feng, Y. (Creator), Kohrn, B. F. (Creator), Kennedy, S. R. (Creator), Kim, J. J. (Creator), Wei, J.-J. (Creator) & Garbutt, A. (Contributor), figshare, 2022

  DOI: 10.6084/m9.figshare.20362734, https://springernature.figshare.com/articles/dataset/Additional_file_2_of_Myometrial_oxidative_stress_drives_MED12_mutations_in_leiomyoma/20362734

  Dataset

• Tyrosine 625 plays a key role and cooperates with tyrosine 630 in MPL W515L-induced signaling and myeloproliferative neoplasms

  Yu, C. (Creator), Yang, Q. (Creator), Chen, Y. (Creator), Wang, D. (Creator), Levine, R. (Creator), Crispino, J. (Creator), Wen, Q. (Creator) & Huang, Z. (Creator), figshare, 2016

  DOI: 10.6084/m9.figshare.c.3632687.v1, https://springernature.figshare.com/collections/Tyrosine_625_plays_a_key_role_and_cooperates_with_tyrosine_630_in_MPL_W515L-induced_signaling_and_myeloproliferative_neoplasms/3632687/1

  Dataset

• Crystal Structure of C148 mGFP-scDNA-2

  Winegar, P. H. (Contributor), Hayes, O. G. (Contributor), McMillan, J. R. (Contributor), Figg, C. A. (Contributor), Focia, P. J. (Contributor) & Mirkin, C. A. (Contributor), Protein Data Bank (PDB), Mar 18 2020

  DOI: 10.2210/pdb6UHR/pdb, https://www.wwpdb.org/pdb?id=pdb_00006uhr

  Dataset

• Additional file 2 of Histone tail analysis reveals H3K36me2 and H4K16ac as epigenetic signatures of diffuse intrinsic pontine glioma

  An, S. (Contributor), Camarillo, J. M. (Creator), Huang, T.Y.-T. (Creator), Li, D. (Creator), Morris, J. A. (Creator), Zoltek, M. A. (Creator), Qi, J. (Creator), Behbahani, M. (Contributor), Kambhampati, M. (Creator), Kelleher, N. L. (Creator), Nazarian, J. (Creator), Thomas, P. M. (Creator) & Saratsis, A. M. (Creator), figshare, 2020

  DOI: 10.6084/m9.figshare.13291201, https://springernature.figshare.com/articles/presentation/Additional_file_2_of_Histone_tail_analysis_reveals_H3K36me2_and_H4K16ac_as_epigenetic_signatures_of_diffuse_intrinsic_pontine_glioma/13291201

  Dataset

• Additional file 11 of Histone tail analysis reveals H3K36me2 and H4K16ac as epigenetic signatures of diffuse intrinsic pontine glioma

  An, S. (Contributor), Camarillo, J. M. (Creator), Huang, T.Y.-T. (Creator), Li, D. (Creator), Morris, J. A. (Creator), Zoltek, M. A. (Creator), Qi, J. (Creator), Behbahani, M. (Contributor), Kambhampati, M. (Creator), Kelleher, N. L. (Creator), Nazarian, J. (Creator), Thomas, P. M. (Creator) & Saratsis, A. M. (Creator), figshare, 2020

  DOI: 10.6084/m9.figshare.13291192, https://springernature.figshare.com/articles/dataset/Additional_file_11_of_Histone_tail_analysis_reveals_H3K36me2_and_H4K16ac_as_epigenetic_signatures_of_diffuse_intrinsic_pontine_glioma/13291192

  Dataset

• Additional file 6 of Histone tail analysis reveals H3K36me2 and H4K16ac as epigenetic signatures of diffuse intrinsic pontine glioma

  An, S. (Contributor), Camarillo, J. M. (Creator), Huang, T.Y.-T. (Creator), Li, D. (Creator), Morris, J. A. (Creator), Zoltek, M. A. (Creator), Qi, J. (Creator), Behbahani, M. (Contributor), Kambhampati, M. (Creator), Kelleher, N. L. (Creator), Nazarian, J. (Creator), Thomas, P. M. (Creator) & Saratsis, A. M. (Creator), figshare, 2020

  DOI: 10.6084/m9.figshare.13291213, https://springernature.figshare.com/articles/dataset/Additional_file_6_of_Histone_tail_analysis_reveals_H3K36me2_and_H4K16ac_as_epigenetic_signatures_of_diffuse_intrinsic_pontine_glioma/13291213

  Dataset

• Additional file 5 of Histone tail analysis reveals H3K36me2 and H4K16ac as epigenetic signatures of diffuse intrinsic pontine glioma

  An, S. (Contributor), Camarillo, J. M. (Creator), Huang, T.Y.-T. (Creator), Li, D. (Creator), Morris, J. A. (Creator), Zoltek, M. A. (Creator), Qi, J. (Creator), Behbahani, M. (Contributor), Kambhampati, M. (Creator), Kelleher, N. L. (Creator), Nazarian, J. (Creator), Thomas, P. M. (Creator) & Saratsis, A. M. (Creator), figshare, 2020

  DOI: 10.6084/m9.figshare.13291210, https://springernature.figshare.com/articles/dataset/Additional_file_5_of_Histone_tail_analysis_reveals_H3K36me2_and_H4K16ac_as_epigenetic_signatures_of_diffuse_intrinsic_pontine_glioma/13291210

  Dataset

• Additional file 3 of Histone tail analysis reveals H3K36me2 and H4K16ac as epigenetic signatures of diffuse intrinsic pontine glioma

  An, S. (Contributor), Camarillo, J. M. (Creator), Huang, T.Y.-T. (Creator), Li, D. (Creator), Morris, J. A. (Creator), Zoltek, M. A. (Creator), Qi, J. (Creator), Behbahani, M. (Contributor), Kambhampati, M. (Creator), Kelleher, N. L. (Creator), Nazarian, J. (Creator), Thomas, P. M. (Creator) & Saratsis, A. M. (Creator), figshare, 2020

  DOI: 10.6084/m9.figshare.13291204, https://springernature.figshare.com/articles/dataset/Additional_file_3_of_Histone_tail_analysis_reveals_H3K36me2_and_H4K16ac_as_epigenetic_signatures_of_diffuse_intrinsic_pontine_glioma/13291204

  Dataset

• Additional file 2: Table S1. of HiC-bench: comprehensive and reproducible Hi-C data analysis designed for parameter exploration and benchmarking

  Lazaris, C. (Creator), Kelly, S. (Creator), Ntziachristos, P. (Creator), Aifantis, I. (Contributor) & Tsirigos, A. (Creator), figshare, 2017

  DOI: 10.6084/m9.figshare.c.3658829_d2.v1, https://springernature.figshare.com/articles/dataset/Additional_file_2_Table_S1_of_HiC-bench_comprehensive_and_reproducible_Hi-C_data_analysis_designed_for_parameter_exploration_and_benchmarking/4523063/1

  Dataset

• X-ray Structure of C148 mGFP

  Winegar, P. H. (Contributor), Hayes, O. G. (Contributor), McMillan, J. R. (Contributor), Figg, C. A. (Contributor), Focia, P. J. (Contributor) & Mirkin, C. A. (Contributor), Protein Data Bank (PDB), Mar 18 2020

  DOI: 10.2210/pdb6UHJ/pdb, https://www.wwpdb.org/pdb?id=pdb_00006uhj

  Dataset

• Crystal Structure of C148 mGFP-ncDNA-1

  Winegar, P. H. (Contributor), Hayes, O. G. (Contributor), McMillan, J. R. (Contributor), Figg, C. A. (Contributor), Focia, P. J. (Contributor) & Mirkin, C. A. (Contributor), Protein Data Bank (PDB), Mar 18 2020

  DOI: 10.2210/pdb6UHP/pdb, https://www.wwpdb.org/pdb?id=pdb_00006uhp

  Dataset

• Crystal Structure of C148 mGFP-cDNA-3

  Winegar, P. H. (Contributor), Hayes, O. G. (Contributor), McMillan, J. R. (Contributor), Figg, C. A. (Contributor), Focia, P. J. (Contributor) & Mirkin, C. A. (Contributor), Protein Data Bank (PDB), Mar 18 2020

  DOI: 10.2210/pdb6UHQ/pdb, https://www.wwpdb.org/pdb?id=pdb_00006uhq

  Dataset

• Histone tail analysis reveals H3K36me2 and H4K16ac as epigenetic signatures of diffuse intrinsic pontine glioma

  An, S. (Contributor), Camarillo, J. M. (Creator), Huang, T.Y.-T. (Creator), Li, D. (Creator), Morris, J. A. (Creator), Zoltek, M. A. (Creator), Qi, J. (Creator), Behbahani, M. (Contributor), Kambhampati, M. (Creator), Kelleher, N. L. (Creator), Nazarian, J. (Creator), Thomas, P. M. (Creator) & Saratsis, A. M. (Creator), figshare, 2020

  DOI: 10.6084/m9.figshare.c.5219932, https://springernature.figshare.com/collections/Histone_tail_analysis_reveals_H3K36me2_and_H4K16ac_as_epigenetic_signatures_of_diffuse_intrinsic_pontine_glioma/5219932

  Dataset