Biochemistry and Molecular Genetics

Search results

• 1.7 Angstrom Resolution Crystal Structure of Putative Nucleoside Diphosphate Kinase from Toxoplasma gondii with Tyrosine of Tag Bound to Active Site

  Lykins, J. D. (Contributor), Filippova, E. V. (Contributor), Halavaty, A. S. (Contributor), Minasov, G. (Contributor), Zhou, Y. (Contributor), Dubrovska, I. (Contributor), Flores, K. J. (Contributor), Shuvalova, L. A. (Contributor), Ruan, J. (Contributor), El Bissati, K. (Contributor), Dovgin, S. (Contributor), Roberts, C. W. (Contributor), Woods, S. (Contributor), Moulton, J. D. (Contributor), Moulton, H. (Contributor), McPhillie, M. J. (Contributor), Muench, S. P. (Contributor), Fishwick, C. W. G. (Contributor), Sabini, E. (Contributor), Shanmugam, D. (Contributor), Roos, D. S. (Contributor), McLeod, R. (Contributor), Anderson, W. F. (Contributor) & Ngô, H. M. (Contributor), Protein Data Bank (PDB), Jun 24 2015

  DOI: 10.2210/pdb5BXI/pdb, https://www.wwpdb.org/pdb?id=pdb_00005bxi

  Dataset

• Additional file 7 of Histone tail analysis reveals H3K36me2 and H4K16ac as epigenetic signatures of diffuse intrinsic pontine glioma

  An, S. (Contributor), Camarillo, J. M. (Creator), Huang, T.Y.-T. (Creator), Li, D. (Creator), Morris, J. A. (Creator), Zoltek, M. A. (Creator), Qi, J. (Creator), Behbahani, M. (Contributor), Kambhampati, M. (Creator), Kelleher, N. L. (Creator), Nazarian, J. (Creator), Thomas, P. M. (Creator) & Saratsis, A. M. (Creator), figshare, 2020

  DOI: 10.6084/m9.figshare.13291216, https://springernature.figshare.com/articles/dataset/Additional_file_7_of_Histone_tail_analysis_reveals_H3K36me2_and_H4K16ac_as_epigenetic_signatures_of_diffuse_intrinsic_pontine_glioma/13291216

  Dataset

• Additional file 9 of Histone tail analysis reveals H3K36me2 and H4K16ac as epigenetic signatures of diffuse intrinsic pontine glioma

  An, S. (Contributor), Camarillo, J. M. (Creator), Huang, T.Y.-T. (Creator), Li, D. (Creator), Morris, J. A. (Creator), Zoltek, M. A. (Creator), Qi, J. (Creator), Behbahani, M. (Contributor), Kambhampati, M. (Creator), Kelleher, N. L. (Creator), Nazarian, J. (Creator), Thomas, P. M. (Creator) & Saratsis, A. M. (Creator), figshare, 2020

  DOI: 10.6084/m9.figshare.13291222, https://springernature.figshare.com/articles/presentation/Additional_file_9_of_Histone_tail_analysis_reveals_H3K36me2_and_H4K16ac_as_epigenetic_signatures_of_diffuse_intrinsic_pontine_glioma/13291222

  Dataset

• Additional file 5 of Histone tail analysis reveals H3K36me2 and H4K16ac as epigenetic signatures of diffuse intrinsic pontine glioma

  An, S. (Contributor), Camarillo, J. M. (Creator), Huang, T.Y.-T. (Creator), Li, D. (Creator), Morris, J. A. (Creator), Zoltek, M. A. (Creator), Qi, J. (Creator), Behbahani, M. (Contributor), Kambhampati, M. (Creator), Kelleher, N. L. (Creator), Nazarian, J. (Creator), Thomas, P. M. (Creator) & Saratsis, A. M. (Creator), figshare, 2020

  DOI: 10.6084/m9.figshare.13291210, https://springernature.figshare.com/articles/dataset/Additional_file_5_of_Histone_tail_analysis_reveals_H3K36me2_and_H4K16ac_as_epigenetic_signatures_of_diffuse_intrinsic_pontine_glioma/13291210

  Dataset

• 1.65 Angstrom resolution crystal structure of lmo0182 (residues 1-245) from Listeria monocytogenes EGD-e

  Light, S. H. (Contributor), Cahoon, L. A. (Contributor), Mahasenan, K. V. (Contributor), Lee, M. (Contributor), Boggess, B. (Contributor), Halavaty, A. S. (Contributor), Mobashery, S. (Contributor), Freitag, N. E. (Contributor) & Anderson, W. F. (Contributor), Protein Data Bank (PDB), Feb 1 2017

  DOI: 10.2210/pdb5HOP/pdb, https://www.wwpdb.org/pdb?id=pdb_00005hop

  Dataset

• Crystal structure of Listeria monocytogenes InlP

  Faralla, C. (Contributor), Bastounis, E. E. (Contributor), Ortega, F. E. (Contributor), Light, S. H. (Contributor), Rizzuto, G. (Contributor), Nocadello, S. (Contributor), Anderson, W. F. (Contributor), Robbins, J. R. (Contributor), Theriot, J. A. (Contributor) & Bakardjiev, A. I. (Contributor), Protein Data Bank (PDB), Jan 18 2017

  DOI: 10.2210/pdb5HL3/pdb, https://www.wwpdb.org/pdb?id=pdb_00005hl3

  Dataset

• Crystal structure of DPY-30 dimerization/docking domain in complex with Ash2L Sdc1-DPY-30 Interacting region (SDI)

  Tremblay, V. (Contributor), Zhang, P. (Contributor), Chaturvedi, C.-P. (Contributor), Thornton, J. (Contributor), Brunzelle, J. S. (Contributor), Skiniotis, G. (Contributor), Shilatifard, A. (Contributor), Brand, M. (Contributor) & Couture, J.-F. (Contributor), Protein Data Bank (PDB), Dec 17 2014

  DOI: 10.2210/pdb4RIQ/pdb, https://www.wwpdb.org/pdb?id=pdb_00004riq

  Dataset

• Additional file 12 of Histone tail analysis reveals H3K36me2 and H4K16ac as epigenetic signatures of diffuse intrinsic pontine glioma

  An, S. (Contributor), Camarillo, J. M. (Creator), Huang, T.Y.-T. (Creator), Li, D. (Creator), Morris, J. A. (Creator), Zoltek, M. A. (Creator), Qi, J. (Creator), Behbahani, M. (Contributor), Kambhampati, M. (Creator), Kelleher, N. L. (Creator), Nazarian, J. (Creator), Thomas, P. M. (Creator) & Saratsis, A. M. (Creator), figshare, 2020

  DOI: 10.6084/m9.figshare.13291195, https://springernature.figshare.com/articles/presentation/Additional_file_12_of_Histone_tail_analysis_reveals_H3K36me2_and_H4K16ac_as_epigenetic_signatures_of_diffuse_intrinsic_pontine_glioma/13291195

  Dataset

• Cycloalternan-forming enzyme from Listeria monocytogenes in complex with cycloalternan

  Light, S. H. (Contributor), Cahoon, L. A. (Contributor), Mahasenan, K. V. (Contributor), Lee, M. (Contributor), Boggess, B. (Contributor), Halavaty, A. S. (Contributor), Mobashery, S. (Contributor), Freitag, N. E. (Contributor) & Anderson, W. F. (Contributor), Protein Data Bank (PDB), Dec 14 2016

  DOI: 10.2210/pdb5I0D/pdb, https://www.wwpdb.org/pdb?id=pdb_00005i0d

  Dataset

• Additional file 4 of Cancer-specific CTCF binding facilitates oncogenic transcriptional dysregulation

  Fang, C. (Contributor), Wang, Z. (Contributor), Han, C. (Contributor), Safgren, S. L. (Creator), Helmin, K. A. (Creator), Adelman, E. R. (Creator), Serafin, V. (Creator), Basso, G. (Creator), Eagen, K. P. (Creator), Gaspar-Maia, A. (Creator), Figueroa, M. E. (Creator), Singer, B. D. (Creator), Ratan, A. (Contributor), Ntziachristos, P. (Creator) & Zang, C. (Creator), figshare, 2020

  DOI: 10.6084/m9.figshare.12960917, https://springernature.figshare.com/articles/dataset/Additional_file_4_of_Cancer-specific_CTCF_binding_facilitates_oncogenic_transcriptional_dysregulation/12960917

  Dataset

• Additional file 8 of Cancer-specific CTCF binding facilitates oncogenic transcriptional dysregulation

  Fang, C. (Contributor), Wang, Z. (Contributor), Han, C. (Contributor), Safgren, S. L. (Creator), Helmin, K. A. (Creator), Adelman, E. R. (Creator), Serafin, V. (Creator), Basso, G. (Creator), Eagen, K. P. (Creator), Gaspar-Maia, A. (Creator), Figueroa, M. E. (Creator), Singer, B. D. (Creator), Ratan, A. (Contributor), Ntziachristos, P. (Creator) & Zang, C. (Creator), figshare, 2020

  DOI: 10.6084/m9.figshare.12960929, https://springernature.figshare.com/articles/dataset/Additional_file_8_of_Cancer-specific_CTCF_binding_facilitates_oncogenic_transcriptional_dysregulation/12960929

  Dataset

• Structure of the PonA1 protein from Mycobacterium Tuberculosis in complex with penicillin V

  Filippova, E. V. (Contributor), Kieser, K. J. (Contributor), Luan, C.-H. (Contributor), Wawrzak, Z. (Contributor), Kiryukhina, O. (Contributor), Rubin, E. J. (Contributor) & Anderson, W. F. (Contributor), Protein Data Bank (PDB), May 4 2016

  DOI: 10.2210/pdb5CXW/pdb, https://www.wwpdb.org/pdb?id=pdb_00005cxw

  Dataset

• Additional file 3 of Histone tail analysis reveals H3K36me2 and H4K16ac as epigenetic signatures of diffuse intrinsic pontine glioma

  An, S. (Contributor), Camarillo, J. M. (Creator), Huang, T.Y.-T. (Creator), Li, D. (Creator), Morris, J. A. (Creator), Zoltek, M. A. (Creator), Qi, J. (Creator), Behbahani, M. (Contributor), Kambhampati, M. (Creator), Kelleher, N. L. (Creator), Nazarian, J. (Creator), Thomas, P. M. (Creator) & Saratsis, A. M. (Creator), figshare, 2020

  DOI: 10.6084/m9.figshare.13291204, https://springernature.figshare.com/articles/dataset/Additional_file_3_of_Histone_tail_analysis_reveals_H3K36me2_and_H4K16ac_as_epigenetic_signatures_of_diffuse_intrinsic_pontine_glioma/13291204

  Dataset

• Additional file 6 of Cancer-specific CTCF binding facilitates oncogenic transcriptional dysregulation

  Fang, C. (Contributor), Wang, Z. (Contributor), Han, C. (Contributor), Safgren, S. L. (Creator), Helmin, K. A. (Creator), Adelman, E. R. (Creator), Serafin, V. (Creator), Basso, G. (Creator), Eagen, K. P. (Creator), Gaspar-Maia, A. (Creator), Figueroa, M. E. (Creator), Singer, B. D. (Creator), Ratan, A. (Contributor), Ntziachristos, P. (Creator) & Zang, C. (Creator), figshare, 2020

  DOI: 10.6084/m9.figshare.12960923, https://springernature.figshare.com/articles/dataset/Additional_file_6_of_Cancer-specific_CTCF_binding_facilitates_oncogenic_transcriptional_dysregulation/12960923

  Dataset

• Targeting CD133 improves chemotherapeutic efficacy of recurrent pediatric pilocytic astrocytoma following prolonged chemotherapy

  Xi, G. (Contributor), Li, Y. D. (Contributor), Grahovac, G. (Creator), Rajaram, V. (Creator), Wadhwani, N. (Contributor), Pundy, T. (Creator), Mania-Farnell, B. (Creator), James, C. D. (Creator) & Tomita, T. (Creator), figshare, 2017

  DOI: 10.6084/m9.figshare.c.3696475, https://figshare.com/collections/Targeting_CD133_improves_chemotherapeutic_efficacy_of_recurrent_pediatric_pilocytic_astrocytoma_following_prolonged_chemotherapy/3696475

  Dataset

• Crystal Structure of Pre-cleavage Form of Cysteine Protease Domain from Vibrio cholerae RtxA Toxin

  Anderson, W. F. (Contributor), Protein Data Bank (PDB), Feb 17 2009

  DOI: 10.2210/pdb3FZY/pdb, https://www.wwpdb.org/pdb?id=pdb_00003fzy

  Dataset

• Additional file 2: Figure S1. of Targeting CD133 improves chemotherapeutic efficacy of recurrent pediatric pilocytic astrocytoma following prolonged chemotherapy

  Xi, G. (Contributor), Li, Y. D. (Contributor), Grahovac, G. (Creator), Rajaram, V. (Creator), Wadhwani, N. (Contributor), Pundy, T. (Creator), Mania-Farnell, B. (Creator), James, C. D. (Creator) & Tomita, T. (Creator), figshare, 2017

  DOI: 10.6084/m9.figshare.c.3696475_d3, https://springernature.figshare.com/articles/figure/Additional_file_2_Figure_S1_of_Targeting_CD133_improves_chemotherapeutic_efficacy_of_recurrent_pediatric_pilocytic_astrocytoma_following_prolonged_chemotherapy/4670890

  Dataset

• Additional file 1: of Targeting CD133 improves chemotherapeutic efficacy of recurrent pediatric pilocytic astrocytoma following prolonged chemotherapy

  Xi, G. (Contributor), Li, Y. D. (Contributor), Grahovac, G. (Creator), Rajaram, V. (Creator), Wadhwani, N. (Contributor), Pundy, T. (Creator), Mania-Farnell, B. (Creator), James, C. D. (Creator) & Tomita, T. (Creator), figshare, 2017

  DOI: 10.6084/m9.figshare.c.3696475_d1, https://springernature.figshare.com/articles/dataset/Additional_file_1_of_Targeting_CD133_improves_chemotherapeutic_efficacy_of_recurrent_pediatric_pilocytic_astrocytoma_following_prolonged_chemotherapy/4670860

  Dataset

• Tyrosine 625 plays a key role and cooperates with tyrosine 630 in MPL W515L-induced signaling and myeloproliferative neoplasms

  Yu, C. (Creator), Yang, Q. (Creator), Chen, Y. (Creator), Wang, D. (Creator), Levine, R. (Creator), Crispino, J. (Creator), Wen, Q. (Creator) & Huang, Z. (Creator), figshare, 2016

  DOI: 10.6084/m9.figshare.c.3632687.v1, https://springernature.figshare.com/collections/Tyrosine_625_plays_a_key_role_and_cooperates_with_tyrosine_630_in_MPL_W515L-induced_signaling_and_myeloproliferative_neoplasms/3632687/1

  Dataset

• Crystal Structure of a Physical Mixture of C148 mGFP and scDNA-1

  Winegar, P. H. (Contributor), Hayes, O. G. (Contributor), McMillan, J. R. (Contributor), Figg, C. A. (Contributor), Focia, P. J. (Contributor) & Mirkin, C. A. (Contributor), Protein Data Bank (PDB), Mar 18 2020

  DOI: 10.2210/pdb6UHM/pdb, https://www.wwpdb.org/pdb?id=pdb_00006uhm

  Dataset

• Crystal Structure of C176 mGFP

  Winegar, P. H. (Contributor), Hayes, O. G. (Contributor), McMillan, J. R. (Contributor), Figg, C. A. (Contributor), Focia, P. J. (Contributor) & Mirkin, C. A. (Contributor), Protein Data Bank (PDB), Mar 18 2020

  DOI: 10.2210/pdb6UHK/pdb, https://www.wwpdb.org/pdb?id=pdb_00006uhk

  Dataset

• Crystal Structure of C148 mGFP-scDNA-1

  Winegar, P. H. (Contributor), Hayes, O. G. (Contributor), McMillan, J. R. (Contributor), Figg, C. A. (Contributor), Focia, P. J. (Contributor) & Mirkin, C. A. (Contributor), Protein Data Bank (PDB), Mar 18 2020

  DOI: 10.2210/pdb6UHL/pdb, https://www.wwpdb.org/pdb?id=pdb_00006uhl

  Dataset

• ADP-ribosyltransferase toxin/immunity pair

  Ting, S.-Y. (Contributor), Bosch, D. E. (Contributor), Mangiameli, S. M. (Contributor), Radey, M. C. (Contributor), Huang, S. (Contributor), Park, Y.-J. (Contributor), Kelly, K. A. (Contributor), Filip, S. K. (Contributor), Goo, Y. A. (Contributor), Eng, J. K. (Contributor), Allaire, M. (Contributor), Veesler, D. (Contributor), Wiggins, P. A. (Contributor), Peterson, S. B. (Contributor) & Mougous, J. D. (Contributor), Protein Data Bank (PDB), Oct 31 2018

  DOI: 10.2210/pdb6DRE/pdb, https://www.wwpdb.org/pdb?id=pdb_00006dre

  Dataset

• Structure of TelC from Streptococcus intermedius B196

  Whitney, J. C. (Contributor), Peterson, S. B. (Contributor), Kim, J. (Contributor), Pazos, M. (Contributor), Verster, A. J. (Contributor), Radey, M. C. (Contributor), Kulasekara, H. D. (Contributor), Ching, M. Q. (Contributor), Bullen, N. P. (Contributor), Bryant, D. (Contributor), Goo, Y. A. (Contributor), Surette, M. G. (Contributor), Borenstein, E. (Contributor), Vollmer, W. (Contributor) & Mougous, J. D. (Contributor), Protein Data Bank (PDB), Jul 26 2017

  DOI: 10.2210/pdb5UKH/pdb, https://www.wwpdb.org/pdb?id=pdb_00005ukh

  Dataset

• Additional file 3 of Subtype-associated epigenomic landscape and 3D genome structure in bladder cancer

  Iyyanki, T. (Creator), Zhang, B. (Creator), Wang, Q. (Creator), Hou, Y. (Creator), Jin, Q. (Creator), Xu, J. (Creator), Yang, H. (Creator), Liu, T. (Creator), Wang, X. (Creator), Song, F. (Creator), Luan, Y. (Creator), Yamashita, H. (Creator), Chien, R. (Creator), Lyu, H. (Creator), Zhang, L. (Creator), Wang, L. (Creator), Warrick, J. (Creator), Raman, J. D. (Creator), Meeks, J. J. (Creator), DeGraff, D. J. (Creator) & Yue, F. (Creator), figshare, 2021

  DOI: 10.6084/m9.figshare.14429357, https://springernature.figshare.com/articles/dataset/Additional_file_3_of_Subtype-associated_epigenomic_landscape_and_3D_genome_structure_in_bladder_cancer/14429357

  Dataset