Driskill Graduate Training Program in Life Sciences

Search results

• QMAP-Seq bioinformatic analysis pipeline

  Brockway, S. (Contributor), Wang, G. (Contributor), Jackson, J. M. (Contributor), Amici, D. R. (Contributor), Takagishi, S. R. (Contributor), Clutter, M. R. (Contributor), Bartom, E. T. (Contributor) & Mendillo, M. L. (Contributor), ZENODO, Oct 5 2020

  DOI: 10.5281/zenodo.4067236, https://zenodo.org/records/4067236

  Dataset

• Cycloalternan-degrading enzyme from Trueperella pyogenes in complex with isomaltose

  Light, S. H. (Contributor), Cahoon, L. A. (Contributor), Mahasenan, K. V. (Contributor), Lee, M. (Contributor), Boggess, B. (Contributor), Halavaty, A. S. (Contributor), Mobashery, S. (Contributor), Freitag, N. E. (Contributor) & Anderson, W. F. (Contributor), Protein Data Bank (PDB), Dec 14 2016

  DOI: 10.2210/pdb5I0E/pdb, https://www.wwpdb.org/pdb?id=pdb_00005i0e

  Dataset

• Crystal structure of a GNAT superfamily acetyltransferase PA4794 in complex with Cefalotin

  Majorek, K. A. (Contributor), Kuhn, M. L. (Contributor), Chruszcz, M. (Contributor), Anderson, W. F. (Contributor) & Minor, W. (Contributor), Protein Data Bank (PDB), Jun 5 2013

  DOI: 10.2210/pdb4KOX/pdb, https://www.wwpdb.org/pdb?id=pdb_00004kox

  Dataset

• hMiro EF hand and cGTPase domains, GDP and Ca2+ bound state

  Klosowiak, J. L. (Contributor), Park, S. (Contributor), Smith, K. P. (Contributor), French, M. E. (Contributor), Focia, P. J. (Contributor), Freymann, D. M. (Contributor) & Rice, S. E. (Contributor), Protein Data Bank (PDB), Sep 21 2016

  DOI: 10.2210/pdb5KTY/pdb, https://www.wwpdb.org/pdb?id=pdb_00005kty

  Dataset

• Structure of the LdcB LD-carboxypeptidase reveals the molecular basis of peptidoglycan recognition

  Hoyland, C. N. (Contributor), Aldridge, C. (Contributor), Cleverley, R. M. (Contributor), Duchêne, M.-C. (Contributor), Minasov, G. (Contributor), Onopriyenko, O. (Contributor), Sidiq, K. (Contributor), Stogios, P. J. (Contributor), Anderson, W. F. (Contributor), Daniel, R. A. (Contributor), Savchenko, A. (Contributor), Vollmer, W. (Contributor) & Lewis, R. J. (Contributor), Protein Data Bank (PDB), May 21 2014

  DOI: 10.2210/pdb4OXD/pdb, https://www.wwpdb.org/pdb?id=pdb_00004oxd

  Dataset

• 2.4 Angstrom Resolution Crystal Structure of Putative Nucleoside Diphosphate Kinase from Toxoplasma gondii.

  Lykins, J. D. (Contributor), Filippova, E. V. (Contributor), Halavaty, A. S. (Contributor), Minasov, G. (Contributor), Zhou, Y. (Contributor), Dubrovska, I. (Contributor), Flores, K. J. (Contributor), Shuvalova, L. A. (Contributor), Ruan, J. (Contributor), El Bissati, K. (Contributor), Dovgin, S. (Contributor), Roberts, C. W. (Contributor), Woods, S. (Contributor), Moulton, J. D. (Contributor), Moulton, H. (Contributor), McPhillie, M. J. (Contributor), Muench, S. P. (Contributor), Fishwick, C. W. G. (Contributor), Sabini, E. (Contributor), Shanmugam, D. (Contributor), Roos, D. S. (Contributor), McLeod, R. (Contributor), Anderson, W. F. (Contributor) & Ngô, H. M. (Contributor), Protein Data Bank (PDB), Dec 25 2013

  DOI: 10.2210/pdb4O0N/pdb, https://www.wwpdb.org/pdb?id=pdb_00004o0n

  Dataset

• 2.85 Angstrom resolution crystal structure of betaine aldehyde dehydrogenase (betB) H448F/P449M double mutant from Staphylococcus aureus in complex with NAD+ and BME-free Cys289

  Halavaty, A. S. (Contributor), Rich, R. L. (Contributor), Chen, C. (Contributor), Joo, J. C. (Contributor), Minasov, G. (Contributor), Dubrovska, I. (Contributor), Winsor, J. R. (Contributor), Myszka, D. G. (Contributor), Duban, M. (Contributor), Shuvalova, L. (Contributor), Yakunin, A. F. (Contributor), Anderson, W. F. (Contributor), Brown, G. (Contributor), Stolnikova, E. (Contributor) & Savchenko, A. (Contributor), Protein Data Bank (PDB), Jun 17 2015

  DOI: 10.2210/pdb4ZXU/pdb, https://www.wwpdb.org/pdb?id=pdb_00004zxu

  Dataset

• Crystal structure of a GNAT superfamily acetyltransferase PA4794 in complex with bisubstrate analog 3

  Majorek, K. A. (Contributor), Kuhn, M. L. (Contributor), Chruszcz, M. (Contributor), Anderson, W. F. (Contributor), Minor, W. (Contributor), Reidl, C. (Contributor), Dang, J. (Contributor), Tran, D. (Contributor), Jew, K. (Contributor), Law, M. (Contributor), Payne, Y. (Contributor) & Becker, D. P. (Contributor), Protein Data Bank (PDB), Jul 26 2017

  DOI: 10.2210/pdb5VDB/pdb, https://www.wwpdb.org/pdb?id=pdb_00005vdb

  Dataset

• GDP COMPLEX OF SRP GTPASE FFH NG DOMAIN

  Ramirez, U. D. (Contributor), Focia, P. J. (Contributor) & Freymann, D. M. (Contributor), Protein Data Bank (PDB), Feb 13 2007

  DOI: 10.2210/pdb2C03/pdb, https://www.wwpdb.org/pdb?id=pdb_00002c03

  Dataset

• 2.11 Angstrom resolution crystal structure of betaine aldehyde dehydrogenase (betB) P449M/Y450L double mutant from Staphylococcus aureus in complex with NAD+ and BME-modified Cys289

  Chen, C. (Contributor), Joo, J. C. (Contributor), Brown, G. (Contributor), Stolnikova, E. (Contributor), Halavaty, A. S. (Contributor), Savchenko, A. (Contributor), Anderson, W. F. (Contributor), Yakunin, A. F. (Contributor), Rich, R. L. (Contributor), Minasov, G. (Contributor), Dubrovska, I. (Contributor), Winsor, J. R. (Contributor), Myszka, D. G. (Contributor), Duban, M. (Contributor) & Shuvalova, L. (Contributor), Protein Data Bank (PDB), Dec 9 2015

  DOI: 10.2210/pdb5EZ4/pdb, https://www.wwpdb.org/pdb?id=pdb_00005ez4

  Dataset

• Crystal structure of a GNAT superfamily acetyltransferase PA4794 in complex with 7-aminocephalosporanic acid

  Majorek, K. A. (Contributor), Kuhn, M. L. (Contributor), Chruszcz, M. (Contributor), Anderson, W. F. (Contributor) & Minor, W. (Contributor), Protein Data Bank (PDB), Jun 5 2013

  DOI: 10.2210/pdb4KOR/pdb, https://www.wwpdb.org/pdb?id=pdb_00004kor

  Dataset

• 2.60 Angstrom resolution crystal structure of a protein kinase domain of type III effector NleH2 (ECs1814) from Escherichia coli O157:H7 str. Sakai

  Halavaty, A. S. (Contributor), Anderson, S. M. (Contributor), Wawrzak, Z. (Contributor), Kudritska, M. (Contributor), Skarina, T. (Contributor), Anderson, W. F. (Contributor) & Savchenko, A. (Contributor), Protein Data Bank (PDB), Jan 15 2014

  DOI: 10.2210/pdb4O96/pdb, https://www.wwpdb.org/pdb?id=pdb_00004o96

  Dataset

• hMiro2 C-terminal GTPase domain, GDP-bound

  Klosowiak, J. L. (Contributor), Park, S. (Contributor), Smith, K. P. (Contributor), French, M. E. (Contributor), Focia, P. J. (Contributor), Freymann, D. M. (Contributor) & Rice, S. E. (Contributor), Protein Data Bank (PDB), Sep 21 2016

  DOI: 10.2210/pdb5KUT/pdb, https://www.wwpdb.org/pdb?id=pdb_00005kut

  Dataset

• 3.65 Angstrom Crystal Structure of Serine-rich Repeat Protein (Srr2) from Streptococcus agalactiae

  Seo, H. S. (Contributor), Minasov, G. (Contributor), Seepersaud, R. (Contributor), Doran, K. S. (Contributor), Dubrovska, I. (Contributor), Shuvalova, L. (Contributor), Anderson, W. F. (Contributor), Iverson, T. M. (Contributor) & Sullam, P. M. (Contributor), Protein Data Bank (PDB), Nov 6 2013

  DOI: 10.2210/pdb4MBR/pdb, https://www.wwpdb.org/pdb?id=pdb_00004mbr

  Dataset

• 2.6 Angstrom Crystal Structure of Putative Phosphoglycerate Mutase 1 from Toxoplasma gondii

  Lykins, J. D. (Contributor), Filippova, E. V. (Contributor), Halavaty, A. S. (Contributor), Minasov, G. (Contributor), Zhou, Y. (Contributor), Dubrovska, I. (Contributor), Flores, K. J. (Contributor), Shuvalova, L. A. (Contributor), Ruan, J. (Contributor), El Bissati, K. (Contributor), Dovgin, S. (Contributor), Roberts, C. W. (Contributor), Woods, S. (Contributor), Moulton, J. D. (Contributor), Moulton, H. (Contributor), McPhillie, M. J. (Contributor), Muench, S. P. (Contributor), Fishwick, C. W. G. (Contributor), Sabini, E. (Contributor), Shanmugam, D. (Contributor), Roos, D. S. (Contributor), McLeod, R. (Contributor), Anderson, W. F. (Contributor) & Ngô, H. M. (Contributor), Protein Data Bank (PDB), Jan 22 2014

  DOI: 10.2210/pdb4ODI/pdb, https://www.wwpdb.org/pdb?id=pdb_00004odi

  Dataset

• hMiro1 C-domain GDP-Pi Complex P3121 Crystal Form

  Klosowiak, J. L. (Contributor), Park, S. (Contributor), Smith, K. P. (Contributor), French, M. E. (Contributor), Focia, P. J. (Contributor), Freymann, D. M. (Contributor) & Rice, S. E. (Contributor), Protein Data Bank (PDB), Sep 21 2016

  DOI: 10.2210/pdb5KSO/pdb, https://www.wwpdb.org/pdb?id=pdb_00005kso

  Dataset

• 1.9 Angstrom resolution crystal structure of uncharacterized protein lmo2446 from Listeria monocytogenes EGD-e

  Light, S. H. (Contributor), Cahoon, L. A. (Contributor), Halavaty, A. S. (Contributor), Freitag, N. E. (Contributor) & Anderson, W. F. (Contributor), Protein Data Bank (PDB), May 29 2013

  DOI: 10.2210/pdb4KMQ/pdb, https://www.wwpdb.org/pdb?id=pdb_00004kmq

  Dataset

• Spermidine N-acetyltransferase from Vibrio cholerae in complex with 2-[n-cyclohexylamino]ethane sulfonate.

  Filippova, E. V. (Contributor), Kuhn, M. L. (Contributor), Osipiuk, J. (Contributor), Kiryukhina, O. (Contributor), Joachimiak, A. (Contributor), Ballicora, M. A. (Contributor) & Anderson, W. F. (Contributor), Protein Data Bank (PDB), Nov 6 2013

  DOI: 10.2210/pdb4NCZ/pdb, https://www.wwpdb.org/pdb?id=pdb_00004ncz

  Dataset

• Thyroid and breast cancer in two sisters with monoallelic mutations in the ataxia telangiectasia mutated (ATM) gene - Supplemental Materials

  Miasaki, F. Y. (Contributor), Saito, K. C. (Contributor), Boguszewski, C. L. (Contributor), Kopp, P. A. (Contributor) & Kimura, E. T. (Contributor), ZENODO, May 6 2021

  DOI: 10.5281/zenodo.4739734, https://zenodo.org/record/4739734

  Dataset

• hMiro1 C-domain GDP Complex P41212 Crystal Form

  Klosowiak, J. L. (Contributor), Park, S. (Contributor), Smith, K. P. (Contributor), French, M. E. (Contributor), Focia, P. J. (Contributor), Freymann, D. M. (Contributor) & Rice, S. E. (Contributor), Protein Data Bank (PDB), Sep 21 2016

  DOI: 10.2210/pdb5KSY/pdb, https://www.wwpdb.org/pdb?id=pdb_00005ksy

  Dataset

• Crystal structure of hypothetical protein with ketosteroid isomerase-like protein fold from Catenulispora acidiphila DSM 44928

  Filippova, E. V. (Contributor), Luan, C.-H. (Contributor), Dunne, S. F. (Contributor), Kiryukhina, O. (Contributor), Minasov, G. (Contributor), Shuvalova, L. (Contributor) & Anderson, W. F. (Contributor), Protein Data Bank (PDB), Oct 3 2012

  DOI: 10.2210/pdb4H3U/pdb, https://www.wwpdb.org/pdb?id=pdb_00004h3u

  Dataset

• NMR STRUCTURE OF SRP RNA DOMAIN IV

  Schmitz, U. (Contributor), Behrens, S. (Contributor), Freymann, D. M. (Contributor), Keenan, R. J. (Contributor), Lukavsky, P. (Contributor), Walter, P. (Contributor) & James, T. L. (Contributor), Protein Data Bank (PDB), Jan 14 2000

  DOI: 10.2210/pdb1CQL/pdb, https://www.wwpdb.org/pdb?id=pdb_00001cql

  Dataset

• Additional file 2: Table S1. of Progesterone receptor blockade in human breast cancer cells decreases cell cycle progression through G2/M by repressing G2/M genes

  Clare, S. E. (Creator), Gupta, A. (Creator), Choi, M. (Creator), Ranjan, M. (Creator), Lee, O. (Contributor), Wang, J. (Creator), Ivancic, D. Z. (Creator), Kim, J. J. (Contributor) & Khan, S. A. (Creator), figshare, 2016

  DOI: 10.6084/m9.figshare.c.3596489_d5, https://springernature.figshare.com/articles/dataset/Additional_file_2_Table_S1_of_Progesterone_receptor_blockade_in_human_breast_cancer_cells_decreases_cell_cycle_progression_through_G2_M_by_repressing_G2_M_genes/4318838

  Dataset

• 3NG1 : N AND GTPASE DOMAINS OF THE SIGNAL SEQUENCE RECOGNITION PROTEIN FFH FROM THERMUS AQUATICUS

  Freymann, D. M. (Contributor), Stroud, R. M. (Contributor) & Walter, P. (Contributor), RCSB-PDB, 1999

  DOI: 10.2210/pdb3ng1/pdb, https://www.rcsb.org/structure/3NG1

  Dataset

• Thrombocorticin

  Watari, H. (Contributor), Kageyama, H. (Contributor), Masubuchi, N. (Contributor), Nakajima, H. (Contributor), Onodera, K. (Contributor), Focia, P. J. (Contributor), Oshiro, T. (Contributor), Matsui, T. (Contributor), Kodera, Y. (Contributor), Ogawa, T. (Contributor), Yokoyama, T. (Contributor), Hirayama, M. (Contributor), Hori, K. (Contributor), Freymann, D. M. (Contributor), Imai, M. (Contributor), Komatsu, N. (Contributor), Araki, M. (Contributor), Tanaka, Y. (Contributor) & Sakai, R. (Contributor), Protein Data Bank (PDB), Jul 6 2022

  DOI: 10.2210/pdb7F9F/pdb, https://www.wwpdb.org/pdb?id=pdb_00007f9f

  Dataset