Life Sciences Graduate Programs

Research Output

Article

Clinical characteristics of cervicogenic-related dizziness and vertigo

Yacovino, D. A. & Hain, T. C., Oct 1 2013, In : Seminars in Neurology. 33, 3, p. 244-255 12 p.

Research output: Contribution to journalArticle

42 Scopus citations

Clinically concordant variations of Alzheimer pathology in aphasic versus amnestic dementia

Gefen, T., Gasho, K., Rademaker, A., Lalehzari, M., Weintraub, S., Rogalski, E., Wieneke, C., Bigio, E., Geula, C. & Mesulam, M. M., May 2012, In : Brain. 135, 5, p. 1554-1565 12 p.

Research output: Contribution to journalArticle

81 Scopus citations

Clinical significance of IL-18 gene over-expression in AML

Zhang, B., Wang, Y., Zheng, G. G., Ma, X. T., Li, G., Zhang, F. K. & Wu, K. F., Aug 23 2002, In : Leukemia Research. 26, 10, p. 887-892 6 p.

Research output: Contribution to journalArticle

25 Scopus citations
Open Access
11 Scopus citations

Clinical trajectories and biological features of Primary Progressive Aphasia (PPA)

Rogalski, E. J. & Mesulam, M. M., Aug 1 2009, In : Current Alzheimer Research. 6, 4, p. 331-336 6 p.

Research output: Contribution to journalArticle

22 Scopus citations

Clinician perceptions of operating room to intensive care unit handoffs and implications for patient safety: A qualitative study

McElroy, L. M., MacApagal, K. R., Collins, K. M., Abecassis, M. M., Holl, J. L., Ladner, D. P. & Gordon, E. J., Oct 1 2015, In : American Journal of Surgery. 210, 4, p. 629-635 7 p.

Research output: Contribution to journalArticle

18 Scopus citations

Columbia University's informatics for diabetes education and telemedicine (IDEATel) project: Technical implementation

Starren, J., Hripcsak, G., Sengupta, S., Abbruscato, C. R., Knudson, P. E., Weinstock, R. S. & Shea, S., Jan 1 2002, In : Journal of the American Medical Informatics Association. 9, 1, p. 25-36 12 p.

Research output: Contribution to journalArticle

97 Scopus citations

Columbia University's Informatics for Diabetes Education and Telemedicine (IDEATel) Project: Rationale and design

Shea, S., Starren, J., Weinstock, R. S., Knudson, P. E., Teresi, J., Holmes, D., Palmas, W., Field, L., Goland, R., Tuck, C., Hripcsak, G., Capps, L. & Liss, D., Jan 1 2002, In : Journal of the American Medical Informatics Association. 9, 1, p. 49-62 14 p.

Research output: Contribution to journalArticle

123 Scopus citations

Combinatorial analysis of transcription factor partners reveals recruitment of c-MYC to estrogen receptor-α responsive promoters

Cheng, A. S. L., Jin, V. X., Fan, M., Smith, L. T., Liyanarachchi, S., Yan, P. S., Leu, Y. W., Chan, M. W. Y., Plass, C., Nephew, K. P., Davuluri, R. V. & Huang, T. H. M., Feb 3 2006, In : Molecular cell. 21, 3, p. 393-404 12 p.

Research output: Contribution to journalArticle

139 Scopus citations

Combining anti-miR-155 with chemotherapy for the treatment of lung cancers

Van Roosbroeck, K., Fanini, F., Setoyama, T., Ivan, C., Rodriguez-Aguayo, C., Fuentes-Mattei, E., Xiao, L., Vannini, I., Redis, R. S., D'Abundo, L., Zhang, X., Nicoloso, M. S., Rossi, S., Gonzalez-Villasana, V., Rupaimoole, R., Ferracin, M., Morabito, F., Neri, A., Ruvolo, P. P., Ruvolo, V. R. & 20 others, Pecot, C. V., Amadori, D., Abruzzo, L., Calin, S., Wang, X., You, M. J., Ferrajoli, A., Orlowski, R., Plunkett, W., Lichtenberg, T. M., Davuluri, R. V., Berindan-Neagoe, I., Negrini, M., Wistuba, I. I., Kantarjian, H. M., Sood, A. K., Lopez-Berestein, G., Keating, M. J., Fabbri, M. & Calin, G. A., Jun 1 2017, In : Clinical Cancer Research. 23, 11, p. 2891-2904 14 p.

Research output: Contribution to journalArticle

58 Scopus citations

Communication Bridge: A pilot feasibility study of Internet-based speech-language therapy for individuals with progressive aphasia

Rogalski, E. J., Saxon, M., McKenna, H., Wieneke, C., Rademaker, A., Corden, M. E., Borio, K., Mesulam, M. M. & Khayum, B., Nov 1 2016, In : Alzheimer's and Dementia: Translational Research and Clinical Interventions. 2, 4, p. 213-221 9 p.

Research output: Contribution to journalArticle

15 Scopus citations

Comparative evaluation of isoform-level gene expression estimation algorithms for RNA-seq and exon-array platforms

Dapas, M., Kandpal, M., Bi, Y. & Davuluri, R. V., Jan 1 2017, In : Briefings in Bioinformatics. 18, 2, p. 260-269 10 p.

Research output: Contribution to journalArticle

13 Scopus citations

Competing clinical trials in the same institution: Ethical issues in subject selection and informed consent

Gordon, E. J. & Micetich, K. C., Mar 1 2002, In : IRB Ethics and Human Research. 24, 2, p. 1-7 7 p.

Research output: Contribution to journalArticle

4 Scopus citations

Computational identification of promoters and first exons in the human genome

Davuluri, R. V., Grosse, I. & Zhang, M. Q., Jan 1 2001, In : Nature Genetics. 29, 4, p. 412-417 6 p.

Research output: Contribution to journalArticle

322 Scopus citations

Computer and World Wide Web accessibility by visually disabled patients: Problems and solutions

Chiang, M. F., Cole, R. G., Gupta, S., Kaiser, G. E. & Starren, J. B., Jan 1 2005, In : Survey of ophthalmology. 50, 4, p. 394-405 12 p.

Research output: Contribution to journalArticle

36 Scopus citations

Computer software to find genes in plant genomic DNA.

Davuluri, R. V. & Zhang, M. Q., 2003, In : Methods in molecular biology (Clifton, N.J.). 236, p. 87-108 22 p.

Research output: Contribution to journalArticle

10 Scopus citations

Consensus-based construction of a taxonomy of clinical trial tasks.

Payne, P. R. O., Deitzer, J. R., Mendonca, E. A. & Starren, J. B., Jan 1 2006, In : AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium. 1 p.

Research output: Contribution to journalArticle

1 Scopus citations

Considerations for Improving the Portability of Electronic Health Record-Based Phenotype Algorithms

Rasmussen, L. V., Brandt, P. S., Jiang, G., Kiefer, R. C., Pacheco, J. A., Adekkanattu, P., Ancker, J. S., Wang, F., Xu, Z., Pathak, J. & Luo, Y., Jan 1 2019, In : AMIA ... Annual Symposium proceedings. AMIA Symposium. 2019, p. 755-764 10 p.

Research output: Contribution to journalArticle

2 Scopus citations

Continuity of transition in hemoglobin S crystallization.

McDade, W. A., Vassar, R. J. & Josephs, R., Jan 1 1987, In : Progress in clinical and biological research. 240, p. 67-89 23 p.

Research output: Contribution to journalArticle

4 Scopus citations

Core informatics competencies for clinical and translational scientists: What do our customers and collaborators need to know?

Valenta, A. L., Meagher, E. A., Tachinardi, U. & Starren, J. B., Jan 1 2016, In : Journal of the American Medical Informatics Association. 23, 4, p. 835-839 5 p.

Research output: Contribution to journalArticle

3 Scopus citations

Costs and benefits of connecting community physicians to a hospital WAN.

Kouroubali, A., Starren, J. B. & Clayton, P. D., 1998, In : Proceedings / AMIA ... Annual Symposium. AMIA Symposium. p. 205-209 5 p.

Research output: Contribution to journalArticle

7 Scopus citations

Coverage of clinical trials tasks in existing ontologies.

Deitzer, J. R., Payne, P. R. O. & Starren, J. B., Jan 1 2006, In : AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium. 1 p.

Research output: Contribution to journalArticle

3 Scopus citations
11 Scopus citations

CpG island methylation in a mouse model of lymphoma is driven by the genetic configuration of tumor cells

Opavsky, R., Wang, S. H., Trikha, P., Raval, A., Huang, Y., Wu, Y. Z., Rodriguez, B., Keller, B., Liyanarachchi, S., Wei, G., Davuluri, R. V., Weinstein, M., Felsher, D., Ostrowski, M., Leone, G. & Plass, C., Sep 2007, In : PLoS genetics. 3, 9, p. 1757-1769 13 p.

Research output: Contribution to journalArticle

36 Scopus citations

CSER and eMERGE: Current and potential state of the display of genetic information in the electronic health record

Shirts, B. H., Salama, J. S., Aronson, S. J., Chung, W. K., Gray, S. W., Hindorff, L. A., Jarvik, G. P., Plon, S. E., Stoffel, E. M., Tarczy-Hornoch, P. Z., Van Allen, E. M., Weck, K. E., Chute, C. G., Freimuth, R. R., Grundmeier, R. W., Hartzler, A. L., Li, R., Peissig, P. L., Peterson, J. F., Rasmussen, L. V. & 3 others, Starren, J. B., Williams, M. S. & Overby, C. L., 2015, In : Journal of the American Medical Informatics Association. 22, 6, p. 1231-1242 12 p.

Research output: Contribution to journalArticle

47 Scopus citations

CTCF binding site sequence differences are associated with unique regulatory and functional trends during embryonic stem cell differentiation

Plasschaert, R. N., Vigneau, S., Tempera, I., Gupta, R., Maksimoska, J., Everett, L., Davuluri, R., Mamorstein, R., Lieberman, P. M., Schultz, D., Hannenhalli, S. & Bartolomei, M. S., 2014, In : Nucleic acids research. 42, 2, p. 774-789 16 p.

Research output: Contribution to journalArticle

36 Scopus citations

Depression and glycemic control in elderly ethnically diverse patients with diabetes: The IDEATel project

Trief, P. M., Morin, P. C., Izquierdo, R., Teresi, J. A., Eimicke, J. P., Goland, R., Starren, J., Shea, S. & Weinstock, R. S., Jan 1 2006, In : Diabetes care. 29, 4, p. 830-835 6 p.

Research output: Contribution to journalArticle

48 Scopus citations
7 Scopus citations

Desiderata for personal electronic communication in clinical systems

Sarkar, I. N. & Starren, J., May 1 2002, In : Journal of the American Medical Informatics Association. 9, 3, p. 209-216 8 p.

Research output: Contribution to journalArticle

6 Scopus citations

Design Features of Graphs in Health Risk Communication: A Systematic Review

Ancker, J. S., Senathirajah, Y., Kukafka, R. & Starren, J. B., Nov 1 2006, In : Journal of the American Medical Informatics Association. 13, 6, p. 608-618 11 p.

Research output: Contribution to journalArticle

287 Scopus citations

Design patterns for the development of electronic health record-driven phenotype extraction algorithms

Rasmussen, L. V., Thompson, W. K., Pacheco, J. A., Kho, A. N., Carrell, D. S., Pathak, J., Peissig, P. L., Tromp, G., Denny, J. C. & Starren, J. B., Jan 1 2014, In : Journal of Biomedical Informatics. 51, p. 280-286 7 p.

Research output: Contribution to journalArticle

22 Scopus citations

Detection and remediation of medically urgent situations using telemedicine case management for older patients with diabetes mellitus

Izquierdo, R., Meyer, S., Starren, J., Goland, R., Teresi, J., Shea, S. & Weinstock, R. S., Aug 13 2007, In : Therapeutics and Clinical Risk Management. 3, 3, p. 485-489 5 p.

Research output: Contribution to journalArticle

17 Scopus citations

Developing a portable natural language processing based phenotyping system

Sharma, H., Mao, C., Zhang, Y., Vatani, H., Yao, L., Zhong, Y., Rasmussen, L., Jiang, G., Pathak, J. & Luo, Y., Apr 4 2019, In : BMC Medical Informatics and Decision Making. 19, 78.

Research output: Contribution to journalArticle

Open Access
5 Scopus citations

Developing computer skills and competencies in seniors.

Pevzner, J., Kaufmann, D. R., Hilliman, C., Shea, S., Weinstock, R. S. & Starren, J., Jan 1 2005, In : AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium. 1 p.

Research output: Contribution to journalArticle

4 Scopus citations

Development, Validation, and Use of English and Spanish Versions of the Telemedicine Satisfaction and Usefulness Questionnaire

Bakken, S., Grullon-Figueroa, L., Izquierdo, R., Lee, N. J., Morin, P., Palmas, W., Teresi, J., Weinstock, R. S., Shea, S. & Starren, J., Nov 1 2006, In : Journal of the American Medical Informatics Association. 13, 6, p. 660-667 8 p.

Research output: Contribution to journalArticle

80 Scopus citations

Development of a model to predict breast cancer survival using data from the National Cancer Data Base

Asare, E. A., Liu, L., Hess, K. R., Gordon, E. J., Paruch, J. L., Palis, B., Dahlke, A. R., McCabe, R., Cohen, M. E., Winchester, D. P. & Bilimoria, K. Y., Feb 1 2016, In : Surgery (United States). 159, 2, p. 495-502 8 p.

Research output: Contribution to journalArticle

2 Scopus citations

Development of an optical character recognition pipeline for handwritten form fields from an electronic health record

Rasmussen, L. V., Peissig, P. L., McCarty, C. A. & Starren, J. B., Jun 1 2012, In : Journal of the American Medical Informatics Association. 19, E1, p. e90-e95

Research output: Contribution to journalArticle

16 Scopus citations

Diagnostic performance of a telemedicine system for ophthalmology: advantages in accuracy and speed compared to standard care

Chiang, M. F., Wang, L., Kim, D., Scott, K., Richter, G., Kane, S., Flynn, J. & Starren, J., Jan 1 2010, In : AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium. 2010, p. 111-115 5 p.

Research output: Contribution to journalArticle

9 Scopus citations

Dimebon alters hippocampal amyloid pathology in 3xTg-AD mice

Perez, S. E., Nadeem, M., Sadleir, K. R., Matras, J., Kelley, C. M., Counts, S. E., Vassar, R. & Mufson, E. J., Oct 9 2012, In : International Journal of Physiology, Pathophysiology and Pharmacology. 4, 3, p. 115-127 13 p.

Research output: Contribution to journalArticle

26 Scopus citations

Direct coupling of the cell cycle and cell death machinery by E2F

Nahle, Z., Polakoff, J., Davuluri, R. V., McCurrach, M. E., Jacobson, M. D., Narita, M., Zhang, M. Q., Lazebnik, Y., Bar-Sagi, D. & Lowe, S. W., Jan 1 2002, In : Nature Cell Biology. 4, 11, p. 28-34 7 p.

Research output: Contribution to journalArticle

349 Scopus citations

DUETT quantitatively identifies known and novel events in nascent RNA structural dynamics from chemical probing data

Xue, A. Y., Yu, A. M., Lucks, J. B., Bagheri, N. & Valencia, A., Dec 15 2019, In : Bioinformatics. 35, 24, p. 5103-5112 10 p.

Research output: Contribution to journalArticle

Open Access
8 Scopus citations

Effect of a mobile web app on kidney transplant candidates' knowledge about increased risk donor kidneys: A randomized controlled trial

Gordon, E. J., Sohn, M. W., Chang, C. H., Mcnatt, G., Vera, K., Beauvais, N., Warren, E., Mannon, R. B. & Ison, M. G., Jun 2017, In : Transplantation. 101, 6, p. 1167-1176 10 p.

Research output: Contribution to journalArticle

12 Scopus citations

Elevated Aβ42 in aged, non-demented individuals with cerebral atherosclerosis

Sadleir, K. R., Bennett, D. A., Schneider, J. A. & Vassar, R., Nov 26 2013, In : Current Alzheimer Research. 10, 8, p. 785-789 5 p.

Research output: Contribution to journalArticle

11 Scopus citations

Encoding a post-operative coronary artery bypass surgery care plan in the Arden Syntax

Starren, J. B., Hripcsak, G., Jordan, D., Allen, B., Weissman, C. & Clayton, P. D., Sep 1994, In : Computers in Biology and Medicine. 24, 5, p. 411-417 7 p.

Research output: Contribution to journalArticle

20 Scopus citations
185 Scopus citations

Enhancement of NIH3T3 cell proliferation by expressing macrophage colony stimulating factor in nuclei

Cao, Z. Y., Wu, K. F., Li, G., Lin, Y. M., Zhang, B. & Zheng, G. G., Mar 2003, In : Chinese Journal of Cancer Research. 15, 1, p. 43-47 5 p.

Research output: Contribution to journalArticle

2 Scopus citations

Epac2 mediates cAMP-dependent potentiation of neurotransmission in the hippocampus

Fernandes, H. B., Riordan, S., Nomura, T., Remmers, C. L., Kraniotis, S., Marshall, J. J., Kukreja, L., Vassar, R. & Contractor, A., Apr 22 2015, In : Journal of Neuroscience. 35, 16, p. 6544-6553 10 p.

Research output: Contribution to journalArticle

26 Scopus citations