Life Sciences Graduate Programs

Research Output

Article

Epigenetic changes during disease progression in a murine model of human chronic lymphocytic leukemia

Chen, S. S., Raval, A., Johnson, A. J., Hertlein, E., Liua, T. H., Jin, V. X., Sherman, M. H., Liu, S. J., Dawson, D. W., Williams, K. E., Lanasa, M., Liyanarachchi, S., Lin, T. S., Marcucci, G., Pekarsky, Y., Davuluri, R., Croce, C. M., Guttridge, D. C., Teitell, M. A., Byrd, J. C. & 1 others, Plass, C., Aug 11 2009, In : Proceedings of the National Academy of Sciences of the United States of America. 106, 32, p. 13433-13438 6 p.

Research output: Contribution to journalArticle

69 Scopus citations

Epigenetic Profiling in Chronic Lymphocytic Leukemia Reveals Novel Methylation Targets

Rush, L. J., Raval, A., Funchain, P., Johnson, A. J., Smith, L., Lucas, D. M., Bembea, M., Liu, T. H., Heerema, N. A., Rassenti, L., Liyanarachchi, S., Davuluri, R., Byrd, J. C. & Plass, C., Apr 1 2004, In : Cancer Research. 64, 7, p. 2424-2433 10 p.

Research output: Contribution to journalArticle

120 Scopus citations

Epistatic Gene-Based Interaction Analyses for Glaucoma in eMERGE and NEIGHBOR Consortium

eMERGE Network & NEIGHBOR Consortium, Sep 2016, In : PLoS genetics. 12, 9, e1006186.

Research output: Contribution to journalArticle

17 Scopus citations

Equilibrium between host and cancer caused by effector T cells killing tumor stroma

Zhang, B., Zhang, Y., Bowerman, N. A., Schietinger, A., Fu, Y. X., Kranz, D. M., Rowley, D. A. & Schreiber, H., Mar 1 2008, In : Cancer Research. 68, 5, p. 1563-1571 9 p.

Research output: Contribution to journalArticle

58 Scopus citations

ER stress is not elevated in the 5XFAD mouse model of Alzheimer’s disease

Sadleir, K. R., Popovic, J. & Vassar, R., Jan 1 2018, In : Journal of Biological Chemistry. 293, 48, p. 18434-18443 10 p.

Research output: Contribution to journalArticle

3 Scopus citations

ERTargetDB: An integral information resource of transcription regulation of estrogen receptor target genes

Jin, V. X., Sun, H., Pohar, T. T., Liyanarachchi, S., Palaniswamy, S. K., Huang, T. H. M. & Davuluri, R. V., Oct 1 2005, In : Journal of Molecular Endocrinology. 35, 2, p. 225-230 6 p.

Research output: Contribution to journalArticle

24 Scopus citations

Estimation of gene expression at isoform level from mRNA-seq data by Bayesian hierarchical modeling

Bhattacharjee, M., Gupta, R. & Davuluri, R. V., 2012, In : Frontiers in Genetics. 3, NOV, Article 239.

Research output: Contribution to journalArticle

Estrogen receptor α target genes: The role of integrated computational genomics and chromation immunoprecipitation microarray

Jin, V. X., Leu, Y. W., Liyanarachchi, S., Sun, H., Fan, M., Nephew, K. P., Huang, T. H. M. & Davuluri, R. V., Dec 1 2006, In : International Journal of Medicine. 8, 1, p. 64-74 11 p.

Research output: Contribution to journalArticle

Ethical considerations of transplantation and living donation for patients with alcoholic liver diseases

Singhvi, A., Welch, A. N., Levitsky, J., Singhvi, D. & Gordon, E. J., Feb 2016, In : AMA Journal of Ethics. 18, 2, p. 163-173 11 p.

Research output: Contribution to journalArticle

8 Scopus citations

Evaluating and improving recruitment and retention in an mHealth clinical trial: An example of iterating methods during a trial

Pfammetter, AF., Mitsos, A., Wang, S., Hood, SH. & Spring, B., Nov 2017, In : mHealth. 3, 49, p. 1-10 10 p.

Research output: Contribution to journalArticle

Evaluating the Portability of an NLP System for Processing Echocardiograms: A Retrospective, Multi-site Observational Study

Adekkanattu, P., Jiang, G., Luo, Y., Kingsbury, P. R., Xu, Z., Rasmussen, L. V., Pacheco, J. A., Kiefer, R. C., Stone, D. J., Brandt, P. S., Yao, L., Zhong, Y., Deng, Y., Wang, F., Ancker, J. S., Campion, T. R. & Pathak, J., Jan 1 2019, In : AMIA ... Annual Symposium proceedings. AMIA Symposium. 2019, p. 190-199 10 p.

Research output: Contribution to journalArticle

Evaluation of a remote training approach for teaching seniors to use a telehealth system

Lai, A. M., Kaufman, D. R., Starren, J. & Shea, S., Nov 1 2009, In : International Journal of Medical Informatics. 78, 11, p. 732-744 13 p.

Research output: Contribution to journalArticle

24 Scopus citations

Evaluation of consumer health website accessibility by users with sensory and physical disabilities.

Chiang, M. F. & Starren, J., 2004, In : Medinfo. MEDINFO. 11, Pt 2, p. 1128-1132 5 p.

Research output: Contribution to journalArticle

8 Scopus citations
6 Scopus citations

Evaluation of gene prediction software using a genomic data set: Application to Arabidopsis thaliana sequences

Pavy, N., Rombauts, S., Déhais, P., Mathé, C., Ramana, D. V. V., Leroy, P. & Rouzé, P., Nov 1999, In : Bioinformatics. 15, 11, p. 887-899 13 p.

Research output: Contribution to journalArticle

72 Scopus citations

Evaluation of the google search appliance for patient cohort discovery.

Oberg, R., Rasmussen, L., Melski, J., Peissig, P. & Starren, J., Jan 1 2008, In : AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium. 1 p.

Research output: Contribution to journalArticle

4 Scopus citations

Expression analysis of BACE2 in brain and peripheral tissues

Bennett, B. D., Babu-Khan, S., Loeloff, R., Louis, J. C., Curran, E., Citron, M. & Vassar, R., Jul 7 2000, In : Journal of Biological Chemistry. 275, 27, p. 20647-20651 5 p.

Research output: Contribution to journalArticle

237 Scopus citations

Expression and production of bioactive human interleukin-18 in transgenic tobacco plants

Zhang, B., Yang, Y. H., Lin, Y. M., Rao, Q., Zheng, G. G. & Wu, K. F., Oct 1 2003, In : Biotechnology Letters. 25, 19, p. 1629-1635 7 p.

Research output: Contribution to journalArticle

18 Scopus citations

Expression and regulation of interleukin-23 subunits in human peripheral blood mononuclear cells and hematopoietic cell lines in response to various inducers

Ma, X. T., Zhang, X. J., Zhang, B., Geng, Y. Q., Lin, Y. M., Li, G. & Wu, K. F., Oct 1 2004, In : Cell Biology International. 28, 10, p. 689-697 9 p.

Research output: Contribution to journalArticle

18 Scopus citations

Expression and significance of IL-18 in the bone marrow of patients with hematological diseases

Zhang, B., Rao, Q., Zheng, G., Cao, Z., Ma, X., Li, G., Lin, Y., Geng, Y. & Wu, K., Feb 1 2003, In : Chinese Medical Journal. 116, 2, p. 218-221 4 p.

Research output: Contribution to journalArticle

5 Scopus citations

Expression of bioactive human M-CSF soluble receptor in transgenic tobacco plants

Zheng, G. G., Yang, Y. H., Rao, Q., Lin, Y. M., Zhang, B. & Wu, K. F., Apr 1 2006, In : Protein Expression and Purification. 46, 2, p. 367-373 7 p.

Research output: Contribution to journalArticle

3 Scopus citations

Expression of IL-18 and its receptor in human leukemia cells

Zhang, B., Ma, X. T., Zheng, G. G., Li, G., Rao, Q. & Wu, K. F., Sep 1 2003, In : Leukemia Research. 27, 9, p. 813-822 10 p.

Research output: Contribution to journalArticle

15 Scopus citations

Expression of LL-37/hCAP-18 gene in human leukemia cells

Yang, Y. H., Zheng, G. G., Li, G., Zhang, B., Song, Y. H. & Wu, K. F., Oct 1 2003, In : Leukemia Research. 27, 10, p. 947-950 4 p.

Research output: Contribution to journalArticle

21 Scopus citations

Expressiveness of the Breast Imaging Reporting and Database System (BI-RADS)

Starren, J. & Johnson, S. M., Jan 1 1997, In : Journal of the American Medical Informatics Association. 4, SUPPL., p. 655-659 5 p.

Research output: Contribution to journalArticle

12 Scopus citations

Eye movements as probes of lexico-semantic processing in a patient with primary progressive aphasia

Seckin, M., Mesulam, M. M., Rademaker, A. W., Voss, J. L., Weintraub, S., Rogalski, E. J. & Hurley, R. S., Jan 2 2016, In : Neurocase. 22, 1, p. 65-75 11 p.

Research output: Contribution to journalArticle

2 Scopus citations

False recognition of incidentally learned pictures and words in primary progressive aphasia

Rogalski, E., Blum, D., Rademaker, A. & Weintraub, S., Jan 1 2007, In : Neuropsychologia. 45, 2, p. 368-377 10 p.

Research output: Contribution to journalArticle

12 Scopus citations

Federal demonstation project tackles diabetes with telemedicine.

Starren, J., Jan 1 2005, In : Caring : National Association for Home Care magazine. 24, 1, p. 6-10 5 p.

Research output: Contribution to journalArticle

Fertility-Related Care for Gender and Sex Diverse Individuals: A Provider Needs-Assessment Survey

Johnson, E. K., Chen, DI., Gordon, E. J., Rosoklija, I., Holl, J. L. & Finlayson, C., Jan 2016, In : Transgender Health. 1, 1, p. 197-201 5 p.

Research output: Contribution to journalArticle

Open Access
5 Scopus citations

Fluctuating vestibulo-ocular reflex in ménière's disease

Yacovino, D. A., Hain, T. C. & Musazzi, M., Jan 1 2017, In : Otology and Neurotology. 38, 2, p. 244-247 4 p.

Research output: Contribution to journalArticle

7 Scopus citations

Fly-QMA: Automated analysis of mosaic imaginal discs in Drosophila

Bernasek, S. M., Peláez, N., Carthew, R. W., Bagheri, N. & Amaral, L. A. N., Jan 1 2020, In : PLoS computational biology. 16, 3, e1007406.

Research output: Contribution to journalArticle

Open Access

Frequency of serum creatinine changes in the absence of iodinated contrast material: Implications for studies of contrast nephrotoxicity

Newhouse, J. H., Kho, D., Rao, Q. A. & Starren, J., Aug 15 2008, In : American Journal of Roentgenology. 191, 2, p. 376-382 7 p.

Research output: Contribution to journalArticle

233 Scopus citations

Frontotemporal networks and behavioral symptoms in primary progressive aphasia

D'Anna, L., Mesulam, M. M., Thiebaut De Schotten, M., Dell'Acqua, F., Murphy, D., Wieneke, C., Martersteck, A., Cobia, D., Rogalski, E. & Catani, M., Apr 12 2016, In : Neurology. 86, 15, p. 1393-1399 7 p.

Research output: Contribution to journalArticle

14 Scopus citations

Functional Connectivity is Reduced in Early-stage Primary Progressive Aphasia When Atrophy is not Prominent

Bonakdarpour, B., Rogalski, E. J., Wang, A., Sridhar, J., Mesulam, M. M. & Hurley, R. S., May 1 2017, In : Alzheimer Disease and Associated Disorders. 31, 2, p. 101-106 6 p.

Research output: Contribution to journalArticle

8 Scopus citations

Gene expression profiling of isogenic cells with different TP53 gene dosage reveals numerous genes that are affected by TP53 dosage and identifies CSPG2 as a direct target of p53

Yoon, H., Liyanarachchi, S., Wright, F. A., Davuluri, R., Lockman, J. C., De la Chapelle, A. & Pellegata, N. S., Nov 26 2002, In : Proceedings of the National Academy of Sciences of the United States of America. 99, 24, p. 15632-15637 6 p.

Research output: Contribution to journalArticle

69 Scopus citations

Gene expression profiling of the human natural killer cell response to Fc receptor activation: Unique enhancement in the presence of interleukin-12

Campbell, A. R., Regan, K., Bhave, N., Pattanayak, A., Parihar, R., Stiff, A. R., Trikha, P., Scoville, S. D., Liyanarachchi, S., Kondadasula, S. V., Lele, O., Davuluri, R. V., Payne, P. R. O. & Carson, W. E., Oct 15 2015, In : BMC Medical Genomics. 8, 1, 66.

Research output: Contribution to journalArticle

7 Scopus citations

Genetic bases of epidermolysis bullosa simplex and epidermolytic hyperkeratosis

Fuchs, E., Coulombe, P., Cheng, J., Chan, Y. M., Hutton, E., Syder, A., Degenstein, L., Yu, Q. C., Letai, A. & Vassar, R., Jan 1 1994, In : Journal of Investigative Dermatology. 103, 5 SUPPL., p. S25-S30

Research output: Contribution to journalArticle

67 Scopus citations
26 Scopus citations

Genetic predisposition to papillary thyroid carcinoma: involvement of FOXE1, TSHR, and a novel lincRNA gene, PTCSC2

He, H., Li, W., Liyanarachchi, S., Jendrzejewski, J., Srinivas, M., Davuluri, R. V., Nagy, R. & de la Chapelle, A., Jan 1 2015, In : The Journal of clinical endocrinology and metabolism. 100, 1, p. E164-E172

Research output: Contribution to journalArticle

Genetic predisposition to papillary thyroid carcinoma: Involvement of FOXE1, TSHR, and a novel lincRNA Gene, PTCSC2

He, H., Li, W., Liyanarachchi, S., Jendrzejewski, J., Srinivas, M., Davuluri, R. V., Nagy, R. & De La Chapelle, A., Jan 1 2015, In : Journal of Clinical Endocrinology and Metabolism. 100, 1, p. E164-E172

Research output: Contribution to journalArticle

59 Scopus citations

Gene transfer of pro-IL-18 and IL-1β converting enzyme cDNA induces potent antitumor effects in L1210 cells

Zhang, B., Wu, K. F., Lin, Y. M., Ma, X. T., Rao, Q., Zheng, G. G., Cao, Z. Y., Li, G. & Song, Y. H., Apr 2004, In : Leukemia. 18, 4, p. 817-825 9 p.

Research output: Contribution to journalArticle

16 Scopus citations

Genome-wide analysis of alternative promoters of human genes using a custom promoter tiling array

Singer, G. A. C., Wu, J., Yan, P., Plass, C., Huang, T. H. M. & Davuluri, R. V., Jul 25 2008, In : BMC Genomics. 9, 349.

Research output: Contribution to journalArticle

31 Scopus citations

Genome-wide analysis of core promoter elements from conserved human and mouse orthologous pairs

Jin, V. X., Singer, G. A. C., Agosto-Pérez, F. J., Liyanarachchi, S. & Davuluri, R. V., Dec 1 2006, In : BMC bioinformatics. 7, 114.

Research output: Contribution to journalArticle

52 Scopus citations

Genome-wide analysis of host-chromosome binding sites for Epstein-Barr Virus Nuclear Antigen 1 (EBNA1)

Lu, F., Wikramasinghe, P., Norseen, J., Tsai, K., Wang, P., Showe, L., Davuluri, R. V. & Lieberman, P. M., Oct 11 2010, In : Virology Journal. 7, 262.

Research output: Contribution to journalArticle

54 Scopus citations

Genome-wide mapping of RNA Pol-II promoter usage in mouse tissues by ChIP-seq

Sun, H., Wu, J., Wickramasinghe, P., Pal, S., Gupta, R., Bhattacharyya, A., Agosto-Perez, F. J., Showe, L. C., Huang, T. H. M. & Davuluri, R. V., 2011, In : Nucleic acids research. 39, 1, p. 190-201 12 p.

Research output: Contribution to journalArticle

37 Scopus citations

Genomic structure and alternative splicing of murine R2B receptor protein tyrosine phosphatases (PTPκ, μ, ρ and PCP-2) _apdat 2040211

Besco, J., Popesco, M. C., Davuluri, R. V., Frostholm, A. & Rotter, A., Jun 7 2004, In : BMC Genomics. 5, 14.

Research output: Contribution to journalArticle

18 Scopus citations

Global Identification of EVI1 Target Genes in Acute Myeloid Leukemia

Glass, C., Wuertzer, C., Cui, X., Bi, Y., Davuluri, R., Xiao, Y. Y., Wilson, M., Owens, K., Zhang, Y. & Perkins, A., Jun 27 2013, In : PloS one. 8, 6, e67134.

Research output: Contribution to journalArticle

31 Scopus citations

Google analytics of a pilot mass and social media campaign targeting Hispanics about living kidney donation

Gordon, E. J., Shand, J. & Black, A., Nov 1 2016, In : Internet Interventions. 6, p. 40-49 10 p.

Research output: Contribution to journalArticle

2 Scopus citations

HemoPDB: Hematopoiesis Promoter Database, an information resource of transcriptional regulation in blood cell development

Pohar, T. T., Sun, H. & Davuluri, R. V., Jan 1 2004, In : Nucleic acids research. 32, DATABASE ISS.

Research output: Contribution to journalArticle

9 Scopus citations

HINCUTs in cancer: Hypoxia-induced noncoding ultraconserved transcripts

Ferdin, J., Nishida, N., Wu, X., Nicoloso, M. S., Shah, M. Y., Devlin, C., Ling, H., Shimizu, M., Kumar, K., Cortez, M. A., Ferracin, M., Bi, Y., Yang, D., Czerniak, B., Zhang, W., Schmittgen, T. D., Voorhoeve, M. P., Reginato, M. J., Negrini, M., Davuluri, R. V. & 3 others, Kunej, T., Ivan, M. & Calin, G. A., Dec 1 2013, In : Cell Death and Differentiation. 20, 12, p. 1675-1687 13 p.

Research output: Contribution to journalArticle

64 Scopus citations

Hippocampal subfield surface deformity in nonsemantic primary progressive aphasia

Christensen, A., Alpert, K., Rogalski, E., Cobia, D., Rao, J., Beg, M. F., Weintraub, S., Mesulam, M. M. & Wang, L., 2015, In : Alzheimer's and Dementia: Diagnosis, Assessment and Disease Monitoring. 1, 1, p. 14-23 10 p.

Research output: Contribution to journalArticle

9 Scopus citations