Life Sciences Graduate Programs

Research Output

Comment/debate

OMGProm: A database of orthologous mammalian gene promoters

Palaniswamy, S. K., Jin, V. X., Sun, H. & Davuluri, R. V., Mar 15 2005, In : Bioinformatics. 21, 6, p. 835-836 2 p.

Research output: Contribution to journalComment/debate

17 Scopus citations
20 Scopus citations

Vision loss in a teenage girl with postconcussion syndrome

Al-Khersan, H., Hain, T. & Grassi, M. A., Jan 1 2017, In : JAMA ophthalmology. 135, 1, p. 75-76 2 p.

Research output: Contribution to journalComment/debate

Conference contribution

Ad-hoc association of pre-determined ZigBee devices

Seeling, P. & Starren, J. B., Dec 31 2009, 2009 6th Annual International Conference on Mobile and Ubiquitous Systems: Networking and Services, MobiQuitous 2009. 5326384

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations

Characterizing Design Patterns of EHR-Driven Phenotype Extraction Algorithms

Zhong, Y., Rasmussen, L., Deng, Y., Pacheco, J., Smith, M. E., Starren, J. B., Wei, W. Q., Speltz, P., Denny, J., Walton, N., Hripcsak, G., Chute, C. G. & Luo, Y., Jan 21 2019, Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018. Schmidt, H., Griol, D., Wang, H., Baumbach, J., Zheng, H., Callejas, Z., Hu, X., Dickerson, J. & Zhang, L. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 1143-1146 4 p. 8621240. (Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Children as design partners in the development of a support system for children with cancer

Ruland, C. M., Slaughter, L., Starren, J. & Vatne, T. M., Jan 1 2006, Consumer-Centered Computer-Supported Care for Healthy People - Proceedings of NI 2006: The 9th International Congress on Nursing Informatics. IOS Press, p. 80-85 6 p. (Studies in Health Technology and Informatics; vol. 122).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

7 Scopus citations

Comparison of data discretization methods for cross platform transfer of gene-expression based tumor subtyping classifier

Jung, S., Bi, Y. & Davuluri, R. V., Jul 24 2014, 2014 IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2014. Institute of Electrical and Electronics Engineers Inc., 6863918. (2014 IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2014).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Data mining of mRNA-Seq and small RNA-Seq data to find microRNA targets

Kim, H. & Davuluri, R. V., Oct 25 2010, 2010 ACM International Conference on Bioinformatics and Computational Biology, ACM-BCB 2010. p. 499-501 3 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Deep Generative Classifiers for Thoracic Disease Diagnosis with Chest X-ray Images

Mao, C., Yao, L., Pan, Y., Luo, Y. & Zeng, Z., Jan 21 2019, Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018. Schmidt, H., Griol, D., Wang, H., Baumbach, J., Zheng, H., Callejas, Z., Hu, X., Dickerson, J. & Zhang, L. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 1209-1214 6 p. 8621107. (Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Discovery of regulatory networks in plants by linking promoter and transcription factor databases

Yilmaz, A., Palaniswamy, S., Davuluri, R. & Grotewold, E., Nov 2 2009, OCCBIO'09: 2009 Ohio Collaborative Conference on Bioinformatics. p. 61-64 4 p. 5159163

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Early Prediction of Acute Kidney Injury in Critical Care Setting Using Clinical Notes

Li, Y., Yao, L., Mao, C., Srivastava, A., Jiang, X. & Luo, Y., Jan 21 2019, Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018. Schmidt, H., Griol, D., Wang, H., Baumbach, J., Zheng, H., Callejas, Z., Hu, X., Dickerson, J. & Zhang, L. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 683-686 4 p. 8621574. (Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Early prediction of acute kidney injury in critical care setting using clinical notes and structured multivariate physiological measurements

Sun, M., Baron, J., Dighe, A., Szolovits, P., Wunderink, R. G., Isakova, T. & Luo, Y., Aug 21 2019, MEDINFO 2019: Health and Wellbeing e-Networks for All - Proceedings of the 17th World Congress on Medical and Health Informatics. Seroussi, B., Ohno-Machado, L., Ohno-Machado, L. & Seroussi, B. (eds.). IOS Press, p. 368-372 5 p. (Studies in Health Technology and Informatics; vol. 264).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Estimating the expression of transcript isoforms from mRNA-seq via nonnegative least squares

Kim, H., Bi, Y. & Davuluri, R. V., Sep 6 2010, 10th IEEE International Conference on Bioinformatics and Bioengineering 2010, BIBE 2010. p. 296-297 2 p. 5521668

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Identification of candidate regulatory SNPs by integrative analysis for prostate cancer genome data

Jung, S., Jin, H. & Davuluri, R. V., Sep 9 2015, BCB 2015 - 6th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics. Association for Computing Machinery, Inc, p. 278-285 8 p. (BCB 2015 - 6th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Implementing a Portable Clinical NLP System with a Common Data Model - A Lisp Perspective

Luo, Y. & Szolovits, P., Jan 21 2019, Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018. Schmidt, H., Griol, D., Wang, H., Baumbach, J., Zheng, H., Callejas, Z., Hu, X., Dickerson, J. & Zhang, L. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 461-466 6 p. 8621521. (Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

In silico prediction of target SNPs affecting miR-mRNA interaction

Sun, H., Nicoloso, M. S., Bhattacharyya, A., Calin, G. A. & Davuluri, R. V., Dec 1 2008, Proceedings - 2008 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW. p. 211-214 4 p. 4686238. (Proceedings - 2008 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Knowledge-driven analysis and data integration for high-throughput biological data

Ochs, M. F., Quackenbush, J., Davuluri, R. & Ressom, H., Dec 1 2009, Pacific Symposium on Biocomputing 2009, PSB 2009. p. 353-355 3 p. (Pacific Symposium on Biocomputing 2009, PSB 2009).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Knowledge-driven analysis and data integration for high-throughput biological data

Ochs, M. F., Quackenbush, J. & Davuluri, R., Dec 1 2008, Pacific Symposium on Biocomputing 2008, PSB 2008. p. 137-140 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Medical providers' dental information needs: A baseline survey

Acharya, A., Mahnke, A., Chyou, P. H., Rottscheit, C. & Starren, J. B., Jan 1 2011, User Centred Networked Health Care - Proceedings of MIE 2011. IOS Press, p. 387-391 5 p. (Studies in Health Technology and Informatics; vol. 169).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations

NEAT-o-games: Ubiquitous activity-based gaming

Fujiki, Y., Kazakos, K., Puri, C., Pavlidis, I., Starren, J. & Levine, J., Jan 1 2007, SIGCHI Conference on Human Factors in Computing Systems 2007, CHI 2007 Extended Abstracts. Association for Computing Machinery, p. 2369-2374 6 p. (Conference on Human Factors in Computing Systems - Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

18 Scopus citations

Presentation Discovery: Building a better icon

Payne, P. R. O. & Starren, J., Dec 1 2006, CHI'06 Extended Abstracts on Human Factors in Computing Systems, CHI EA'06. p. 1223-1228 6 p. (Conference on Human Factors in Computing Systems - Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations

Rich text formatted EHR narratives: A hidden and ignored trove

Zeng, Z., Zhao, Y., Sun, M., Vo, A. H., Starren, J. B. & Luo, Y., Aug 21 2019, MEDINFO 2019: Health and Wellbeing e-Networks for All - Proceedings of the 17th World Congress on Medical and Health Informatics. Seroussi, B., Ohno-Machado, L., Ohno-Machado, L. & Seroussi, B. (eds.). IOS Press, p. 472-476 5 p. (Studies in Health Technology and Informatics; vol. 264).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Stratified mortality prediction of patients with acute kidney injury in critical care

Xu, Z., Luo, Y., Adekkanattu, P., Ancker, J. S., Jiang, G., Kiefer, R. C., Pacheco, J. A., Rasmussen, L. V., Pathak, J. & Wang, F., Aug 21 2019, MEDINFO 2019: Health and Wellbeing e-Networks for All - Proceedings of the 17th World Congress on Medical and Health Informatics. Seroussi, B., Ohno-Machado, L., Ohno-Machado, L. & Seroussi, B. (eds.). IOS Press, p. 462-466 5 p. (Studies in Health Technology and Informatics; vol. 264).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Stresscam: Non-contact measurement of users' emotional states through thermal imaging

Puri, C., Olson, L., Pavlidis, I., Levine, J. & Starren, J., Dec 1 2005, CHI'05 Extended Abstracts on Human Factors in Computing Systems, CHI EA'05. p. 1725-1728 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

104 Scopus citations

Supervised Nonnegative Matrix Factorization to Predict ICU Mortality Risk

Chao, G., Mao, C., Wang, F., Zhao, Y. & Luo, Y., Jan 21 2019, Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018. Schmidt, H., Griol, D., Wang, H., Baumbach, J., Zheng, H., Callejas, Z., Hu, X., Dickerson, J. & Zhang, L. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 1189-1194 6 p. 8621403. (Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Using machine learning to integrate socio-behavioral factors in predicting cardiovascular-related mortality risk

Wang, H., Li, Y., Ning, H., Wilkins, J. T., Lloyd-Jones, D. M. & Luo, Y., Aug 21 2019, MEDINFO 2019: Health and Wellbeing e-Networks for All - Proceedings of the 17th World Congress on Medical and Health Informatics. Seroussi, B., Ohno-Machado, L., Ohno-Machado, L. & Seroussi, B. (eds.). IOS Press, p. 433-437 5 p. (Studies in Health Technology and Informatics; vol. 264).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Editorial

Can focusing on self-care reduce disparities in kidney transplantation outcomes?

Gordon, E. J., Prohaska, T., Siminoff, L. A., Minich, P. J. & Sehgal, A. R., May 1 2005, In : American Journal of Kidney Diseases. 45, 5, p. 935-940 6 p.

Research output: Contribution to journalEditorial

27 Scopus citations

Introduction: Gift horse or Trojan horse? Social science perspectives on evidence-based health care

Lambert, H., Gordon, E. J. & Bogdan-Lovis, E. A., Jun 1 2006, In : Social Science and Medicine. 62, 11, p. 2613-2620 8 p.

Research output: Contribution to journalEditorial

54 Scopus citations

Kidney donors at risk: how to inform the donor

Serur, D. & Gordon, E. J., Dec 1 2015, In : Progress in transplantation (Aliso Viejo, Calif.). 25, 4, p. 284-286 3 p.

Research output: Contribution to journalEditorial

Needed: Tailored exercise regimens for kidney transplant recipients

Gordon, E. J., Prohaska, T., Siminoff, L. A., Minich, P. J. & Sehgal, A. R., Jan 1 2005, In : American Journal of Kidney Diseases. 45, 4, p. 769-774 6 p.

Research output: Contribution to journalEditorial

31 Scopus citations

US Transplant Policy Should Strengthen Bridges, Not Build Walls

Gordon, E. J. & Gill, J. S., Jan 1 2016, In : American Journal of Transplantation. 16, 6, p. 1645-1646 2 p.

Research output: Contribution to journalEditorial

3 Scopus citations
Letter

Attitudes and practices in postmortem organ procurement [1] (multiple letters)

Ramalingam, N. D., Gordon, E. J., Ross, L., Gunderson, S., Wendler, D., Dickert, N. & Capron, A. M., Apr 18 2001, In : Journal of the American Medical Association. 285, 15, p. 1958-1960 3 p.

Research output: Contribution to journalLetter

2 Scopus citations

Effects of nuclear-presenting-macrophage colony-stimulating factor on the process of malignancy

Cao, Z. Y., Zhang, B., Rao, Q., Li, G., Zheng, G. G. & Wu, K. F., Jul 2003, In : International journal of hematology. 78, 1, p. 87-89 3 p.

Research output: Contribution to journalLetter

3 Scopus citations

Expression and functional reconstitution of IL-18 receptor in K562 leukemia cells

Zhang, B., Cao, Z. Y., Wu, K. F. & Lin, Y. M., Oct 1 2003, In : Leukemia Research. 27, 10, p. 971-972 2 p.

Research output: Contribution to journalLetter

3 Scopus citations

Letter: physician patient relationships.

Gordon, E. J., Jun 1 1996, In : The Journal of clinical ethics. 7, 2, 1 p.

Research output: Contribution to journalLetter

Longitudinal neuropsychological performance of cognitive SuperAgers

Gefen, T., Shaw, E., Whitney, K., Martersteck, A., Stratton, J., Rademaker, A., Weintraub, S., Mesulam, M. M. & Rogalski, E., Jan 1 2014, In : Journal of the American Geriatrics Society. 62, 8, p. 1598-1600 3 p.

Research output: Contribution to journalLetter

26 Scopus citations

Miscommunicating NOTA Can Be Costly to Living Donors

Mittelman, M., Thiessen, C., Chon, W. J., Clayville, K., Cronin, D. C., Fisher, J. S., Fry-Revere, S., Gross, J. A., Hanneman, J., Henderson, M. L., Ladin, K., Mysel, H., Sherman, L. A., Willock, L. & Gordon, E. J., Feb 1 2017, In : American Journal of Transplantation. 17, 2, p. 578-580 3 p.

Research output: Contribution to journalLetter

3 Scopus citations

Parental leave and pediatric residents [1] (multiple letters)

Bradford, B. J., Weiss, A., Gordon, E. J. & O'Connor, M. E., Jan 1 1999, In : Archives of Pediatrics and Adolescent Medicine. 153, 4, p. 429-430 2 p.

Research output: Contribution to journalLetter

Rates of cortical atrophy in adults 80 years and older with superior vs average episodic memory

Cook, A. H., Sridhar, J., Ohm, D., Rademaker, A., Mesulam, M. M., Weintraub, S. & Rogalski, E., Apr 4 2017, In : JAMA - Journal of the American Medical Association. 317, 13, p. 1373-1375 3 p.

Research output: Contribution to journalLetter

16 Scopus citations

ROP in New York State [7] (multiple letters)

Brown, S. M., Farr, S., Chiang, M. F., Arons, R. R., Flynn, J. T. & Starren, J. B., Apr 1 2005, In : Ophthalmology. 112, 4, p. 738-739 2 p.

Research output: Contribution to journalLetter

Review article

A Call for Research on Individuals Who Opt out of Living Kidney Donation: Challenges and Opportunities

Thiessen, C., Kulkarni, S., Reese, P. P. & Gordon, E. J., Dec 1 2016, In : Transplantation. 100, 12, p. 2527-2532 6 p.

Research output: Contribution to journalReview article

7 Scopus citations

Accuracy and reliability of remote retinopathy of prematurity diagnosis

Chiang, M. F., Keenan, J. D., Starren, J., Du, Y. E., Schiff, W. M., Barile, G. R., Li, J., Johnson, R. A., Hess, D. J. & Flynn, J. T., Mar 1 2006, In : Archives of Ophthalmology. 124, 3, p. 322-327 6 p.

Research output: Contribution to journalReview article

95 Scopus citations

Alternative transcription and alternative splicing in cancer

Pal, S., Gupta, R. & Davuluri, R. V., Dec 2012, In : Pharmacology and Therapeutics. 136, 3, p. 283-294 12 p.

Research output: Contribution to journalReview article

73 Scopus citations

A microRNA component of the hypoxic response

Kulshreshtha, R., Davuluri, R. V., Calin, G. A. & Ivan, M., Apr 1 2008, In : Cell Death and Differentiation. 15, 4, p. 667-671 5 p.

Research output: Contribution to journalReview article

195 Scopus citations

An object-oriented taxonomy of medical data presentations

Starren, J. & Johnson, S. B., Jan 1 2000, In : Journal of the American Medical Informatics Association. 7, 1, p. 1-20 20 p.

Research output: Contribution to journalReview article

30 Scopus citations

An update on primary progressive aphasia

Rogalski, E. & Mesulam, M., Sep 1 2007, In : Current neurology and neuroscience reports. 7, 5, p. 388-392 5 p.

Research output: Contribution to journalReview article

20 Scopus citations

APP mouse models for Alzheimer's disease preclinical studies

Sasaguri, H., Nilsson, P., Hashimoto, S., Nagata, K., Saito, T., De Strooper, B., Hardy, J., Vassar, R., Winblad, B. & Saido, T. C., Sep 1 2017, In : EMBO Journal. 36, 17, p. 2473-2487 15 p.

Research output: Contribution to journalReview article

165 Scopus citations
6 Scopus citations

Aβ deposition is essential to AD neuropathology

Estus, S., Borchelt, D., Kindy, M. S. & Vassar, R., Jun 2002, In : Journal of Alzheimer's Disease. 4, 3, p. 133-138 6 p.

Research output: Contribution to journalReview article

8 Scopus citations

Aβ-generating enzymes: Recent advances in β- and γ-secretase research

Vassar, R. & Citron, M., Jan 1 2000, In : Neuron. 27, 3, p. 419-422 4 p.

Research output: Contribution to journalReview article

250 Scopus citations