Life Sciences Graduate Programs

Research Output

Article

Best Practices and pearls in interdisciplinary mentoring from building interdisciplinary research careers in women's health directors

Building Interdisciplinary Research Careers in Women’s Health Directors, Nov 1 2012, In : Journal of Women's Health. 21, 11, p. 1114-1127 14 p.

Research output: Contribution to journalArticle

9 Scopus citations

Beta Secretase Genes

Citron, M., Vassar, R. & Bennett, BD., Sep 1 2009, In : United States Patent 7,582,465 B2.

Research output: Contribution to journalArticle

Beta Secretase Polypeptides

Citron, M., Vassar, RJ. & Bennett, BD., Aug 25 2009, In : United States Patent 7,579,180 B2.

Research output: Contribution to journalArticle

Bilateral vestibular loss

Hain, T. C., Cherchi, M. & Yacovino, D. A., Oct 1 2013, In : Seminars in Neurology. 33, 3, p. 195-203 9 p.

Research output: Contribution to journalArticle

37 Scopus citations

Breaking down the barriers to computerizing your practice.

Starren, J. & Clayton, P., May 1994, In : The Internist. 35, 5, p. 8-10, 15

Research output: Contribution to journalArticle

Breaking the translational barriers: The value of integrating biomedical informatics and translational research

Payne, P. R. O., Johnson, S. B., Starren, J. B., Tilson, H. H. & Dowdy, D., May 2005, In : Journal of Investigative Medicine. 53, 4, p. 192-200 9 p.

Research output: Contribution to journalArticle

48 Scopus citations

Building oncofertility core competency in developing countries: Experience from Egypt, Tunisia, Brazil, Peru, and Panama

Salama, M., Ataman, L., Taha, T., Azmy, O., Braham, M., Douik, F., Khrouf, M., Rodrigues, J. K., Reis, F. M., Sánchez, F., Romero, S., Vega, M. & Woodruff, T. K., Mar 1 2018, In : Journal of Global Oncology. 2018, 4

Research output: Contribution to journalArticle

10 Scopus citations

Cancer-Associated IDH1 Promotes Growth and Resistance to Targeted Therapies in the Absence of Mutation

Calvert, A. E., Chalastanis, A., Wu, Y., Hurley, L. A., Kouri, F., Bi, Y., Kachman, M., May, J. L., Bartom, E. T., Hua, Y., Mishra, R. K., Schiltz, G. E., Dubrovskyi, O., Mazar, A. P., Peter, M. E., Zheng, H., James, C. D., Burant, C. F., Chandel, N., Davuluri, R. V. & 2 others, Horbinski, C. M. & Stegh, A. H., May 30 2017, In : Cell reports. 19, 9, p. 1858-1873 16 p.

Research output: Contribution to journalArticle

47 Scopus citations

Cancer classification and pathway discovery using non-negative matrix factorization

Zeng, Z., Vo, A. H., Mao, C., Clare, S. E., Khan, S. A. & Luo, Y., Aug 2019, In : Journal of Biomedical Informatics. 96, 103247.

Research output: Contribution to journalArticle

2 Scopus citations

Candidate anti-Aβ fluorene compounds selected from analogs of amyloid imaging agents

Hong, H. S., Maezawa, I., Budamagunta, M., Rana, S., Shi, A., Vassar, R., Liu, R., Lam, K. S., Cheng, R. H., Hua, D. H., Voss, J. C. & Jin, L. W., Oct 1 2010, In : Neurobiology of Aging. 31, 10, p. 1690-1699 10 p.

Research output: Contribution to journalArticle

17 Scopus citations

CART classification of human 5' UTR sequences

Davuluri, R. V., Suzuki, Y., Sugano, S. & Zhang, M. Q., 2000, In : Genome research. 10, 11, p. 1807-1816 10 p.

Research output: Contribution to journalArticle

125 Scopus citations

CCAT2, a novel noncoding RNA mapping to 8q24, underlies metastatic progression and chromosomal instability in colon cancer

Ling, H., Spizzo, R., Atlasi, Y., Nicoloso, M., Shimizu, M., Redis, R. S., Nishida, N., Gafà, R., Song, J., Guo, Z., Ivan, C., Barbarotto, E., De Vries, I., Zhang, X., Ferracin, M., Churchman, M., Van Galen, J. F., Beverloo, B. H., Shariati, M., Haderk, F. & 33 others, Estecio, M. R., Garcia-Manero, G., Patijn, G. A., Gotley, D. C., Bhardwaj, V., Shureiqi, I., Sen, S., Multani, A. S., Welsh, J., Yamamoto, K., Taniguchi, I., Song, M. A., Gallinger, S., Casey, G., Thibodeau, S. N., Le Marchand, L., Tiirikainen, M., Mani, S. A., Zhang, W., Davuluri, R. V., Mimori, K., Mori, M., Sieuwerts, A. M., Martens, J. W. M., Tomlinson, I., Negrini, M., Berindan-Neagoe, I., Foekens, J. A., Hamilton, S. R., Lanza, G., Kopetz, S., Fodde, R. & Calin, G. A., Sep 2013, In : Genome research. 23, 9, p. 1446-1461 16 p.

Research output: Contribution to journalArticle

375 Scopus citations

CD73 has distinct roles in nonhematopoietic and hematopoietic cells to promote tumor growth in mice

Wang, L., Fan, J., Thompson, L. F., Zhang, Y., Shin, T., Curiel, T. J. & Zhang, B., Jun 1 2011, In : Journal of Clinical Investigation. 121, 6, p. 2371-2382 12 p.

Research output: Contribution to journalArticle

149 Scopus citations

CD73 on tumor cells impairs antitumor T-cell responses: A novel mechanism of tumor-induced immune suppression

Jin, D., Fan, J., Wang, L., Thompson, L. F., Liu, A., Daniel, B. J., Shin, T., Curiel, T. J. & Zhang, B., Mar 15 2010, In : Cancer Research. 70, 6, p. 2245-2255 11 p.

Research output: Contribution to journalArticle

235 Scopus citations
46 Scopus citations

Cell autonomous phosphoinositide 3-kinase activation in oocytes disrupts normal ovarian function through promoting survival and overgrowth of ovarian follicles

Kim, S. Y., Ebbert, K., Cordeiro, M. H., Romero, M., Zhu, J., Serna, V. A., Whelan, K. A., Woodruff, T. K. & Kurita, T., Apr 1 2015, In : Endocrinology. 156, 4, p. 1464-1476 13 p.

Research output: Contribution to journalArticle

29 Scopus citations

Cerebrospinal fluid markers detect Alzheimer's disease in nonamnestic dementia

Oboudiyat, C., Gefen, T., Varelas, E., Weintraub, S., Rogalski, E., Bigio, E. H. & Mesulam, M. M., May 2017, In : Alzheimer's and Dementia. 13, 5, p. 598-601 4 p.

Research output: Contribution to journalArticle

4 Scopus citations

Changes in gene expression associated with loss of function of the NSDHL sterol dehydrogenase in mouse embryonic fibroblasts

Cunningham, D., Swartzlander, D., Liyanarachchi, S., Davuluri, R. V. & Herman, G. E., Dec 1 2005, In : Journal of lipid research. 46, 6, p. 1150-1162 13 p.

Research output: Contribution to journalArticle

11 Scopus citations

Changes in parahippocampal white matter integrity in amnestic mild cognitive impairment: A diffusion tensor imaging study

Rogalski, E. J., Murphy, C. M., Detoledo-Morrell, L., Shah, R. C., Moseley, M. E., Bammer, R. & Stebbins, G. T., Jan 1 2009, In : Behavioural Neurology. 21, 1-2, p. 51-61 11 p.

Research output: Contribution to journalArticle

46 Scopus citations

Characteristics of vestibular corrective saccades in patients with slow visual saccades, vestibular disorders and controls: A descriptive analysis

Yacovino, D. A., Martin, L. A., Akly, M. P. & Hain, T. C., May 2018, In : PloS one. 13, 5, e0197079.

Research output: Contribution to journalArticle

6 Scopus citations

Characterization of Alzheimer's β-secretase protein BACE: A pepsin family member with unusual properties

Haniu, M., Denis, P., Young, Y., Mendiaz, E. A., Fuller, J., Hui, J. O., Bennett, B. D., Kahn, S., Ross, S., Burgess, T., Katta, V., Rogers, G., Vassar, R. & Citron, M., Jul 14 2000, In : Journal of Biological Chemistry. 275, 28, p. 21099-21106 8 p.

Research output: Contribution to journalArticle

191 Scopus citations

Characterization of brain tumor initiating cells isolated from an animal model of CNS primitive neuroectodermal tumors

Malchenko, S., Sredni, S. T., Boyineni, J., Bi, Y., Margaryan, N. V., Guda, M. R., Kostenko, Y., Tomita, T., Davuluri, R. V., Velpula, K., Hendrix, M. J. C. & Soares, M. B., 2018, In : Oncotarget. 9, 17, p. 13733-13747 15 p.

Research output: Contribution to journalArticle

3 Scopus citations

Characterization of the ovarian and reproductive abnormalities in prepubertal and adult estrogen non-responsive estrogen receptor α knock-in (ENERKI) mice

Sinkevicius, K. W., Woloszyn, K., Laine, M., Jackson, K. S., Greene, G. L., Woodruff, T. K. & Burdette, J. E., Nov 4 2009, In : Steroids. 74, 12, p. 913-919 7 p.

Research output: Contribution to journalArticle

8 Scopus citations

Chemopreventive effects of heat-processed Panax quinquefolius root on human breast cancer cells

Wang, C. Z., Aung, H. H., Zhang, B., Sun, S., Li, X. L., He, H., Xie, J. T., He, T. C., Du, W. & Yuan, C. S., Sep 2008, In : Anticancer research. 28, 5 A, p. 2545-2551 7 p.

Research output: Contribution to journalArticle

65 Scopus citations

Chemopreventive effects of Panax notoginseng and its major constituents on SW480 human colorectal cancer cells

Wang, C. Z., Xie, J. T., Zhang, B., Ni, M., Fishbein, A., Aung, H. H., Mehendale, S. R., Du, W., He, T. C. & Yuan, C. S., Nov 2007, In : International journal of oncology. 31, 5, p. 1149-1156 8 p.

Research output: Contribution to journalArticle

64 Scopus citations

Children's contributions to designing a communication tool for children with cancer.

Ruland, C. M., Slaughter, L., Starren, J., Vatne, T. M. & Moe, E. Y., Nov 8 2007, In : Medinfo. MEDINFO. 12, Pt 2, p. 977-982 6 p.

Research output: Contribution to journalArticle

9 Scopus citations

Circulating and liver resident CD4+CD25+ regulatory T cells actively influence the antiviral immune response and disease progression in patients with hepatitis B

Xu, D., Fu, J., Jin, L., Zhang, H., Zhou, C., Zou, Z., Zhao, J. M., Zhang, B., Shi, M., Ding, X., Tang, Z., Fu, Y. X. & Wang, F. S., Jul 1 2006, In : Journal of Immunology. 177, 1, p. 739-747 9 p.

Research output: Contribution to journalArticle

347 Scopus citations
9 Scopus citations

Clinical characteristics of cervicogenic-related dizziness and vertigo

Yacovino, D. A. & Hain, T. C., Oct 1 2013, In : Seminars in Neurology. 33, 3, p. 244-255 12 p.

Research output: Contribution to journalArticle

43 Scopus citations

Clinically concordant variations of Alzheimer pathology in aphasic versus amnestic dementia

Gefen, T., Gasho, K., Rademaker, A., Lalehzari, M., Weintraub, S., Rogalski, E., Wieneke, C., Bigio, E., Geula, C. & Mesulam, M. M., May 2012, In : Brain. 135, 5, p. 1554-1565 12 p.

Research output: Contribution to journalArticle

81 Scopus citations

Clinical significance of IL-18 gene over-expression in AML

Zhang, B., Wang, Y., Zheng, G. G., Ma, X. T., Li, G., Zhang, F. K. & Wu, K. F., Aug 23 2002, In : Leukemia Research. 26, 10, p. 887-892 6 p.

Research output: Contribution to journalArticle

25 Scopus citations
Open Access
12 Scopus citations

Clinical trajectories and biological features of Primary Progressive Aphasia (PPA)

Rogalski, E. J. & Mesulam, M. M., Aug 2009, In : Current Alzheimer Research. 6, 4, p. 331-336 6 p.

Research output: Contribution to journalArticle

22 Scopus citations

Clinician perceptions of operating room to intensive care unit handoffs and implications for patient safety: A qualitative study

McElroy, L. M., MacApagal, K. R., Collins, K. M., Abecassis, M. M., Holl, J. L., Ladner, D. P. & Gordon, E. J., Oct 1 2015, In : American Journal of Surgery. 210, 4, p. 629-635 7 p.

Research output: Contribution to journalArticle

18 Scopus citations

Columbia University's informatics for diabetes education and telemedicine (IDEATel) project: Technical implementation

Starren, J., Hripcsak, G., Sengupta, S., Abbruscato, C. R., Knudson, P. E., Weinstock, R. S. & Shea, S., Jan 1 2002, In : Journal of the American Medical Informatics Association. 9, 1, p. 25-36 12 p.

Research output: Contribution to journalArticle

97 Scopus citations

Columbia University's Informatics for Diabetes Education and Telemedicine (IDEATel) Project: Rationale and design

Shea, S., Starren, J., Weinstock, R. S., Knudson, P. E., Teresi, J., Holmes, D., Palmas, W., Field, L., Goland, R., Tuck, C., Hripcsak, G., Capps, L. & Liss, D., 2002, In : Journal of the American Medical Informatics Association. 9, 1, p. 49-62 14 p.

Research output: Contribution to journalArticle

124 Scopus citations

Combinatorial analysis of transcription factor partners reveals recruitment of c-MYC to estrogen receptor-α responsive promoters

Cheng, A. S. L., Jin, V. X., Fan, M., Smith, L. T., Liyanarachchi, S., Yan, P. S., Leu, Y. W., Chan, M. W. Y., Plass, C., Nephew, K. P., Davuluri, R. V. & Huang, T. H. M., Feb 3 2006, In : Molecular cell. 21, 3, p. 393-404 12 p.

Research output: Contribution to journalArticle

139 Scopus citations

Combining anti-miR-155 with chemotherapy for the treatment of lung cancers

Van Roosbroeck, K., Fanini, F., Setoyama, T., Ivan, C., Rodriguez-Aguayo, C., Fuentes-Mattei, E., Xiao, L., Vannini, I., Redis, R. S., D'Abundo, L., Zhang, X., Nicoloso, M. S., Rossi, S., Gonzalez-Villasana, V., Rupaimoole, R., Ferracin, M., Morabito, F., Neri, A., Ruvolo, P. P., Ruvolo, V. R. & 20 others, Pecot, C. V., Amadori, D., Abruzzo, L., Calin, S., Wang, X., You, M. J., Ferrajoli, A., Orlowski, R., Plunkett, W., Lichtenberg, T. M., Davuluri, R. V., Berindan-Neagoe, I., Negrini, M., Wistuba, I. I., Kantarjian, H. M., Sood, A. K., Lopez-Berestein, G., Keating, M. J., Fabbri, M. & Calin, G. A., Jun 1 2017, In : Clinical Cancer Research. 23, 11, p. 2891-2904 14 p.

Research output: Contribution to journalArticle

59 Scopus citations

Communication Bridge: A pilot feasibility study of Internet-based speech-language therapy for individuals with progressive aphasia

Rogalski, E. J., Saxon, M., McKenna, H., Wieneke, C., Rademaker, A., Corden, M. E., Borio, K., Mesulam, M. M. & Khayum, B., Nov 1 2016, In : Alzheimer's and Dementia: Translational Research and Clinical Interventions. 2, 4, p. 213-221 9 p.

Research output: Contribution to journalArticle

16 Scopus citations

Comparative evaluation of isoform-level gene expression estimation algorithms for RNA-seq and exon-array platforms

Dapas, M., Kandpal, M., Bi, Y. & Davuluri, R. V., Jan 1 2017, In : Briefings in Bioinformatics. 18, 2, p. 260-269 10 p.

Research output: Contribution to journalArticle

14 Scopus citations

Competing clinical trials in the same institution: Ethical issues in subject selection and informed consent

Gordon, E. J. & Micetich, K. C., Mar 1 2002, In : IRB Ethics and Human Research. 24, 2, p. 1-7 7 p.

Research output: Contribution to journalArticle

4 Scopus citations

Computational identification of promoters and first exons in the human genome

Davuluri, R. V., Grosse, I. & Zhang, M. Q., 2001, In : Nature Genetics. 29, 4, p. 412-417 6 p.

Research output: Contribution to journalArticle

322 Scopus citations

Computer and World Wide Web accessibility by visually disabled patients: Problems and solutions

Chiang, M. F., Cole, R. G., Gupta, S., Kaiser, G. E. & Starren, J. B., Jan 1 2005, In : Survey of ophthalmology. 50, 4, p. 394-405 12 p.

Research output: Contribution to journalArticle

37 Scopus citations

Computer software to find genes in plant genomic DNA.

Davuluri, R. V. & Zhang, M. Q., 2003, In : Methods in molecular biology (Clifton, N.J.). 236, p. 87-108 22 p.

Research output: Contribution to journalArticle

10 Scopus citations

Consensus-based construction of a taxonomy of clinical trial tasks.

Payne, P. R. O., Deitzer, J. R., Mendonca, E. A. & Starren, J. B., Jan 1 2006, In : AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium. 1 p.

Research output: Contribution to journalArticle

1 Scopus citations

Conserved microRNA mediates heating tolerance in germ cells versus surrounding somatic cells

Wu, Y., Wang, Y., Liu, Q., Zhu, L. J., Gao, H., Cui, M., Liu, J., Zhao, P., Liu, J., Chen, L., Wang, J., Zeng, W., Woodruff, T. K. & Zeng, S., Oct 3 2019, In : RNA biology. 16, 10, p. 1494-1503 10 p.

Research output: Contribution to journalArticle

Considering sex as a biological variable in preclinical research

Miller, L. R., Marks, C., Becker, J. B., Hurn, P. D., Chen, W. J., Woodruff, T., McCarthy, M. M., Sohrabji, F., Schiebinger, L., Lee Wetherington, C., Makris, S., Arnold, A. P., Einstein, G., Miller, V. M., Sandberg, K., Maier, S., Cornelison, T. L. & Clayton, J. A., Jan 2017, In : FASEB Journal. 31, 1, p. 29-34 6 p.

Research output: Contribution to journalArticle

92 Scopus citations

Continuity of transition in hemoglobin S crystallization.

McDade, W. A., Vassar, R. J. & Josephs, R., 1987, In : Progress in clinical and biological research. 240, p. 67-89 23 p.

Research output: Contribution to journalArticle

4 Scopus citations

Core informatics competencies for clinical and translational scientists: What do our customers and collaborators need to know?

Valenta, A. L., Meagher, E. A., Tachinardi, U. & Starren, J. B., 2016, In : Journal of the American Medical Informatics Association. 23, 4, p. 835-839 5 p.

Research output: Contribution to journalArticle

4 Scopus citations