Life Sciences Graduate Programs

Research Output

Morphometric and Histologic Substrates of Cingulate Integrity in Elders with Exceptional Memory Capacity

Gefen, T., Peterson, M., Papastefan, S. T., Martersteck, A., Whitney, K., Rademaker, A., Bigio, E. H., Weintraub, S., Rogalski, E., Mesulam, M. M. & Geula, C., Jan 28 2015, In : Journal of Neuroscience. 35, 4, p. 1781-1791 11 p.

Research output: Contribution to journalArticle

46 Scopus citations

Motivations, challenges, and attitudes to self-management in kidney transplant recipients: A systematic review of qualitative studies

Jamieson, N. J., Hanson, C. S., Josephson, M. A., Gordon, E. J., Craig, J. C., Halleck, F., Budde, K. & Tong, A., Mar 1 2016, In : American Journal of Kidney Diseases. 67, 3, p. 461-478 18 p.

Research output: Contribution to journalArticle

44 Scopus citations

MPromDb: an integrated resource for annotation and visualization of mammalian gene promoters and ChIP-chip experimental data.

Sun, H., Palaniswamy, S. K., Pohar, T. T., Jin, V. X., Huang, T. H. M. & Davuluri, R. V., Jan 1 2006, In : Nucleic acids research. 34, Database issue, p. D98-103

Research output: Contribution to journalArticle

Open Access
32 Scopus citations

MPromDb update 2010: An integrated resource for annotation and visualization of mammalian gene promoters and ChIP-seq experimental data

Gupta, R., Bhattacharyya, A., Agosto-Perez, F. J., Wickramasinghe, P. & Davuluri, R. V., Jan 2011, In : Nucleic acids research. 39, SUPPL. 1, p. D92-D97

Research output: Contribution to journalArticle

32 Scopus citations

Murine versus human apolipoprotein E4: differential facilitation of and co-localization in cerebral amyloid angiopathy and amyloid plaques in APP transgenic mouse models

Liao, F., Zhang, T. J., Jiang, H., Lefton, K. B., Robinson, G. O., Vassar, R., Sullivan, P. M. & Holtzman, D. M., Nov 10 2015, In : Acta Neuropathologica Communications. 3, 1 p.

Research output: Contribution to journalArticle

20 Scopus citations

Mutant keratin expression in transgenic mice causes marked abnormalities resembling a human genetic skin disease

Vassar, R., Coulombe, P. A., Degenstein, L., Albers, K. & Fuchs, E., Jan 25 1991, In : Cell. 64, 2, p. 365-380 16 p.

Research output: Contribution to journalArticle

305 Scopus citations

Naming vs knowing faces in primary progressive aphasia: A tale of 2 hemispheres

Gefen, T., Wieneke, C., Martersteck, A., Whitney, K., Weintraub, S., Mesulam, M. M. & Rogalski, E., Aug 13 2013, In : Neurology. 81, 7, p. 658-664 7 p.

Research output: Contribution to journalArticle

33 Scopus citations

Natural Language Processing for EHR-Based Pharmacovigilance: A Structured Review

Luo, Y., Thompson, W. K., Herr, T. M., Zeng, Z., Berendsen, M. A., Jonnalagadda, S. R., Carson, M. B. & Starren, J. B., Nov 1 2017, In : Drug Safety. 40, 11, p. 1075-1089 15 p.

Research output: Contribution to journalReview article

38 Scopus citations

NEAT-o-games: Ubiquitous activity-based gaming

Fujiki, Y., Kazakos, K., Puri, C., Pavlidis, I., Starren, J. & Levine, J., Jan 1 2007, SIGCHI Conference on Human Factors in Computing Systems 2007, CHI 2007 Extended Abstracts. Association for Computing Machinery, p. 2369-2374 6 p. (Conference on Human Factors in Computing Systems - Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

18 Scopus citations

Needed: Tailored exercise regimens for kidney transplant recipients

Gordon, E. J., Prohaska, T., Siminoff, L. A., Minich, P. J. & Sehgal, A. R., Jan 1 2005, In : American Journal of Kidney Diseases. 45, 4, p. 769-774 6 p.

Research output: Contribution to journalEditorial

31 Scopus citations

Neural mechanisms of object naming and word comprehension in primary progressive aphasia

Hurley, R. S., Paller, K. A., Rogalski, E. J. & Marsel Mesulam, M., Apr 4 2012, In : Journal of Neuroscience. 32, 14, p. 4848-4855 8 p.

Research output: Contribution to journalArticle

39 Scopus citations

Neurology of anomia in the semantic variant of primary progressive aphasia

Mesulam, M., Rogalski, E., Wieneke, C., Cobia, D., Rademaker, A., Thompson, C. & Weintraub, S., Sep 2009, In : Brain. 132, 9, p. 2553-2565 13 p.

Research output: Contribution to journalArticle

85 Scopus citations
117 Scopus citations

Neuropathologic associations of learning and memory in primary progressive aphasia

Kielb, S., Cook, A., Wieneke, C., Rademaker, A., Bigio, E. H., Mesulam, M. M., Rogalski, E. & Weintraub, S., Jul 2016, In : JAMA Neurology. 73, 7, p. 846-852 7 p.

Research output: Contribution to journalArticle

6 Scopus citations

NF-κB regulation of YY1 inhibits skeletal myogenesis through transcriptional silencing of myofibrillar genes

Wang, H., Hertlein, E., Bakkar, N., Sun, H., Acharyya, S., Wang, J., Carathers, M., Davuluri, R. & Guttridge, D. C., Jun 1 2007, In : Molecular and cellular biology. 27, 12, p. 4374-4387 14 p.

Research output: Contribution to journalArticle

178 Scopus citations
5 Scopus citations

Notoginseng enhances anti-cancer effect of 5-fluorouracil on human colorectal cancer cells

Wang, C. Z., Luo, X., Zhang, B., Song, W. X., Ni, M., Mehendale, S., Xie, J. T., Aung, H. H., He, T. C. & Yuan, C. S., Jun 1 2007, In : Cancer Chemotherapy and Pharmacology. 60, 1, p. 69-79 11 p.

Research output: Contribution to journalArticle

75 Scopus citations
1 Scopus citations
19 Scopus citations

OMGProm: A database of orthologous mammalian gene promoters

Palaniswamy, S. K., Jin, V. X., Sun, H. & Davuluri, R. V., Mar 15 2005, In : Bioinformatics. 21, 6, p. 835-836 2 p.

Research output: Contribution to journalComment/debate

17 Scopus citations

Opportunities for genomic clinical decision support interventions

Overby, C. L., Kohane, I., Kannry, J. L., Williams, M. S., Starren, J. B., Bottinger, E., Gottesman, O., Denny, J. C., Weng, C., Tarczy-Hornoch, P. & Hripcsak, G., Oct 1 2013, In : Genetics in Medicine. 15, 10, p. 817-823 7 p.

Research output: Contribution to journalArticle

42 Scopus citations

Optimizing informed consent in living liver donors: Evaluation of a comprehension assessment tool

Gordon, E. J., Mullee, J., Butt, Z., Kang, J. & Baker, T., Oct 1 2015, In : Liver Transplantation. 21, 10, p. 1270-1279 10 p.

Research output: Contribution to journalArticle

4 Scopus citations

Orally administrated cinnamon extract reduces β-amyloid oligomerization and corrects cognitive impairment in Alzheimer's disease animal models

Frydman-Marom, A., Levin, A., Farfara, D., Benromano, T., Scherzer-Attali, R., Peled, S., Vassar, R., Segal, D., Gazit, E., Frenkel, D. & Ovadia, M., Feb 7 2011, In : PloS one. 6, 1, e16564.

Research output: Contribution to journalArticle

122 Scopus citations

Organizing a series of education and support conferences for caregivers of individuals with frontotemporal dementia and primary progressive aphasia

Banks, S., Rogalski, E., Medina, J., Skoglund, A. & Morhardt, D., Oct 1 2006, In : Alzheimer's Care Quarterly. 7, 4, p. 243-250 8 p.

Research output: Contribution to journalReview article

10 Scopus citations

Organocatalytic highly enantioselective synthesis of β-Formyl-α- hydroxyphosphonates

Perera, S., Naganaboina, V. K., Wang, L., Zhang, B., Guo, Q., Rout, L. & Zhao, C. G., Jul 1 2011, In : Advanced Synthesis and Catalysis. 353, 10, p. 1729-1734 6 p.

Research output: Contribution to journalArticle

36 Scopus citations

Orthogonal ubiquitin transfer identifies ubiquitination substrates under differential control by the two ubiquitin activating enzymes

Liu, X., Zhao, B., Sun, L., Bhuripanyo, K., Wang, Y., Bi, Y., Davuluri, R. V., Duong, D. M., Nanavati, D., Yin, J. & Kiyokawa, H., Jan 30 2017, In : Nature communications. 8, 14286.

Research output: Contribution to journalArticle

19 Scopus citations

Papillary and follicular thyroid carcinomas show distinctly different microarray expression profiles and can be distinguished by a minimum of five genes

Aldred, M. A., Huang, Y., Liyanarachchi, S., Pellegata, N. S., Gimm, O., Jhiang, S., Davuluri, R. V., De La Chapelle, A. & Eng, C., Dec 1 2004, In : Journal of Clinical Oncology. 22, 17, p. 3531-3539 9 p.

Research output: Contribution to journalArticle

121 Scopus citations

Parental leave: Comparing children's hospitals with Fortune 500 companies

Weiss, A. H., Gordon, E. J. & O'Connor, M. E., Jul 1 1998, In : Archives of Pediatrics and Adolescent Medicine. 152, 7, p. 629-633 5 p.

Research output: Contribution to journalArticle

5 Scopus citations

Parental leave and pediatric residents [1] (multiple letters)

Bradford, B. J., Weiss, A., Gordon, E. J. & O'Connor, M. E., Jan 1 1999, In : Archives of Pediatrics and Adolescent Medicine. 153, 4, p. 429-430 2 p.

Research output: Contribution to journalLetter

Parental perceptions toward digital imaging and telemedicine for retinopathy of prematurity management

Lee, J. Y., Du, Y. E., Coki, O., Flynn, J. T., Starren, J. & Chiang, M. F., Jan 1 2010, In : Graefe's Archive for Clinical and Experimental Ophthalmology. 248, 1, p. 141-147 7 p.

Research output: Contribution to journalArticle

16 Scopus citations

Participatory design with children in the development of a support system for patient-centered care in pediatric oncology

Ruland, C. M., Starren, J. & Vatne, T. M., Aug 1 2008, In : Journal of Biomedical Informatics. 41, 4, p. 624-635 12 p.

Research output: Contribution to journalArticle

83 Scopus citations

Patient-nephrologist discussions about kidney transplantation as a treatment option

Gordon, E. & Sehgal, A., Jan 1 2000, In : Advances in Renal Replacement Therapy. 7, 2, p. 177-183 7 p.

Research output: Contribution to journalArticle

20 Scopus citations

Patient participation in electronic medical records

Tsai, C. C. & Starren, J., Apr 4 2001, In : Journal of the American Medical Association. 285, 13, 1 p.

Research output: Contribution to journalShort survey

18 Scopus citations
84 Scopus citations

Perceived low-quality communication is not associated with greater frequency of requests for ethics consultation: Null findings from an empirical study

Volpe, R. L., Benrud, J., Gordon, E. J. & Green, M. J., Oct 1 2016, In : AJOB Empirical Bioethics. 7, 4, p. 235-239 5 p.

Research output: Contribution to journalArticle

7 Scopus citations

PGS: A tool for association study of high-dimensional microRNA expression data with repeated measures

Zheng, Y., Fei, Z., Zhang, W., Starren, J. B., Liu, L., Baccarelli, A. A., Li, Y. & Hou, L., Apr 2 2014, In : Bioinformatics. 30, 19, p. 2802-2807 6 p.

Research output: Contribution to journalArticle

5 Scopus citations

Pharmacogenomic clinical decision support design and multi-site process outcomes analysis in the eMERGE Network

Herr, T. M., Peterson, J. F., Rasmussen, L. V., Caraballo, P. J., Peissig, P. L. & Starren, J. B., Jan 1 2019, In : Journal of the American Medical Informatics Association. 26, 2, p. 143-148 6 p.

Research output: Contribution to journalArticle

4 Scopus citations

Phosphorylation of the Translation Initiation Factor eIF2α Increases BACE1 Levels and Promotes Amyloidogenesis

O'Connor, T., Sadleir, K. R., Maus, E., Velliquette, R. A., Zhao, J., Cole, S. L., Eimer, W. A., Hitt, B., Bembinster, L. A., Lammich, S., Lichtenthaler, S. F., Hébert, S. S., De Strooper, B., Haass, C., Bennett, D. A. & Vassar, R., Dec 26 2008, In : Neuron. 60, 6, p. 988-1009 22 p.

Research output: Contribution to journalArticle

293 Scopus citations

Picomole assay for Nτ-methylhistidine by gas chromatography-Mass spectrometry

Matthews, D. E., Starren, J. B., Drexler, A. J., Kipnis, D. M. & Bier, D. M., Jan 15 1981, In : Analytical Biochemistry. 110, 2, p. 308-317 10 p.

Research output: Contribution to journalArticle

17 Scopus citations

Platform-independent classification system for predicting high-grade serous ovarian carcinoma molecular subtypes

Shilpi, A., Kandpal, M., Ji, Y., Seagle, BL. & Davuluri, RV., Apr 3 2019, In : JCO Clinical Cancer Informatics. 3, 1, p. 1-9 9 p.

Research output: Contribution to journalArticle

PML is a direct p53 target that modulates p53 effector functions

De Stanchina, E., Querido, E., Narita, M., Davuluri, R. V., Pandolfi, P. P., Ferbeyre, G. & Lowe, S. W., Feb 27 2004, In : Molecular cell. 13, 4, p. 523-535 13 p.

Research output: Contribution to journalArticle

246 Scopus citations

Polymorphic assemblies of double strands of sickle cell hemoglobin. Manifold pathways of deoxyhemoglobin S crystallization

Wellems, T. E., Vassar, R. J. & Josephs, R., Dec 25 1981, In : Journal of Molecular Biology. 153, 4, p. 1011-1026 16 p.

Research output: Contribution to journalArticle

42 Scopus citations

Practical challenges in integrating genomic data into the electronic health record

Kho, A. N., Rasmussen, L. V., Connolly, J. J., Peissig, P. L., Starren, J., Hakonarson, H. & Hayes, M. G., Oct 1 2013, In : Genetics in Medicine. 15, 10, p. 772-778 7 p.

Research output: Contribution to journalReview article

43 Scopus citations

Practical considerations for implementing genomic information resources: Experiences from eMERGE and CSER: Experiences from eMERGE and CSER

Rasmussen, L. V., Overby, C. L., Connolly, J., Chute, C. G., Denny, J. C., Freimuth, R. R., Hartzler, A. L., Holm, I. A., Manzi, S., Pathak, J., Peissig, P. L., Smith, M. E., Williams, M. S., Shirts, B. H., Stoffel, E. M., Tarczy-Hornoch, P., Rohrer Vitek, C. R., Wolf, W. A. & Starren, J. B., Jan 1 2016, In : Applied Clinical Informatics. 7, 3, p. 870-882 13 p.

Research output: Contribution to journalArticle

14 Scopus citations

Practical Lessons in Remote Connectivity

Kouroubali, A., Starren, J., Barrows, R. C. & Clayton, P. D., Jan 1 1997, In : Journal of the American Medical Informatics Association. 4, SUPPL., p. 335-339 5 p.

Research output: Contribution to journalArticle

7 Scopus citations

Predicting ICU readmission using grouped physiological and medication trends

Xue, Y., Klabjan, D. & Luo, Y., Apr 1 2019, In : Artificial Intelligence In Medicine. 95, p. 27-37 11 p.

Research output: Contribution to journalArticle

6 Scopus citations

Preoperative radiotherapy reduces cervical metastasis of supraglottic carcinoma: A prospective randomized trial in 201 patients

Bin, Z., Pingzhang, T. & Guozhen, X., Jun 22 1998, In : Chinese Journal of Oncology. 20, 1, p. 43-45 3 p.

Research output: Contribution to journalArticle

Presentation Discovery: Building a better icon

Payne, P. R. O. & Starren, J., Dec 1 2006, CHI'06 Extended Abstracts on Human Factors in Computing Systems, CHI EA'06. p. 1223-1228 6 p. (Conference on Human Factors in Computing Systems - Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations

Presynaptic dystrophic neurites surrounding amyloid plaques are sites of microtubule disruption, BACE1 elevation, and increased Aβ generation in Alzheimer’s disease

Sadleir, K. R., Kandalepas, P. C., Buggia-Prévot, V., Nicholson, D. A., Thinakaran, G. & Vassar, R., Aug 1 2016, In : Acta Neuropathologica. 132, 2, p. 235-256 22 p.

Research output: Contribution to journalArticle

68 Scopus citations