Life Sciences Graduate Programs

Research Output

2005
6 Scopus citations

Automating Content Extraction of HTML documents

Gupta, S., Kaiser, G. E., Grimm, P., Chiang, M. F. & Starren, J., Jun 1 2005, In : World Wide Web. 8, 2, p. 179-224 46 p.

Research output: Contribution to journalArticle

64 Scopus citations

beta-Secretase, APP and Abeta in Alzheimer's disease.

Vassar, R., 2005, In : Sub-cellular biochemistry. 38, p. 79-103 25 p.

Research output: Contribution to journalReview article

56 Scopus citations

Breaking the translational barriers: The value of integrating biomedical informatics and translational research

Payne, P. R. O., Johnson, S. B., Starren, J. B., Tilson, H. H. & Dowdy, D., May 2005, In : Journal of Investigative Medicine. 53, 4, p. 192-200 9 p.

Research output: Contribution to journalArticle

48 Scopus citations

Can focusing on self-care reduce disparities in kidney transplantation outcomes?

Gordon, E. J., Prohaska, T., Siminoff, L. A., Minich, P. J. & Sehgal, A. R., May 1 2005, In : American Journal of Kidney Diseases. 45, 5, p. 935-940 6 p.

Research output: Contribution to journalEditorial

27 Scopus citations

Changes in gene expression associated with loss of function of the NSDHL sterol dehydrogenase in mouse embryonic fibroblasts

Cunningham, D., Swartzlander, D., Liyanarachchi, S., Davuluri, R. V. & Herman, G. E., Dec 1 2005, In : Journal of lipid research. 46, 6, p. 1150-1162 13 p.

Research output: Contribution to journalArticle

11 Scopus citations

Computer and World Wide Web accessibility by visually disabled patients: Problems and solutions

Chiang, M. F., Cole, R. G., Gupta, S., Kaiser, G. E. & Starren, J. B., Jan 1 2005, In : Survey of ophthalmology. 50, 4, p. 394-405 12 p.

Research output: Contribution to journalArticle

36 Scopus citations

Developing computer skills and competencies in seniors.

Pevzner, J., Kaufmann, D. R., Hilliman, C., Shea, S., Weinstock, R. S. & Starren, J., Jan 1 2005, In : AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium. 1 p.

Research output: Contribution to journalArticle

4 Scopus citations

E-health challenges and opportunities

Steven, S., Justin, S., Weinstock, R. S., Alice, L., David, D., Jim, B., Glaser, J. P. & Bero, C. L., Jan 1 2005, The Academic Health Center Leadership and Performance. Cambridge University Press, p. 240-278 39 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

182 Scopus citations

ERTargetDB: An integral information resource of transcription regulation of estrogen receptor target genes

Jin, V. X., Sun, H., Pohar, T. T., Liyanarachchi, S., Palaniswamy, S. K., Huang, T. H. M. & Davuluri, R. V., Oct 1 2005, In : Journal of Molecular Endocrinology. 35, 2, p. 225-230 6 p.

Research output: Contribution to journalArticle

24 Scopus citations

Federal demonstation project tackles diabetes with telemedicine.

Starren, J., Jan 1 2005, In : Caring : National Association for Home Care magazine. 24, 1, p. 6-10 5 p.

Research output: Contribution to journalArticle

Make it so! Advocating for UNOS policy change

Gordon, E. J., Jul 1 2005, In : American Journal of Bioethics. 5, 4, p. 21-22 2 p.

Research output: Contribution to journalComment/debate

Needed: Tailored exercise regimens for kidney transplant recipients

Gordon, E. J., Prohaska, T., Siminoff, L. A., Minich, P. J. & Sehgal, A. R., Jan 1 2005, In : American Journal of Kidney Diseases. 45, 4, p. 769-774 6 p.

Research output: Contribution to journalEditorial

31 Scopus citations

OMGProm: A database of orthologous mammalian gene promoters

Palaniswamy, S. K., Jin, V. X., Sun, H. & Davuluri, R. V., Mar 15 2005, In : Bioinformatics. 21, 6, p. 835-836 2 p.

Research output: Contribution to journalComment/debate

17 Scopus citations

Quantifying visual similarity in clinical iconic graphics

Payne, P. R. O. & Starren, J. B., Jan 1 2005, In : Journal of the American Medical Informatics Association. 12, 3, p. 338-345 8 p.

Research output: Contribution to journalArticle

17 Scopus citations

Representation of ophthalmology concepts by electronic systems: Adequacy of controlled medical terminologies

Chiang, M. F., Casper, D. S., Cimino, J. J. & Starren, J., Feb 1 2005, In : Ophthalmology. 112, 2, p. 175-183 9 p.

Research output: Contribution to journalArticle

19 Scopus citations

Residents' access to ethics consultations: Knowledge, use, and perceptions

Gacki-Smith, J. & Gordon, E. J., Feb 2005, In : Academic Medicine. 80, 2, p. 168-175 8 p.

Research output: Contribution to journalReview article

21 Scopus citations

ROP in New York State [7] (multiple letters)

Brown, S. M., Farr, S., Chiang, M. F., Arons, R. R., Flynn, J. T. & Starren, J. B., Apr 1 2005, In : Ophthalmology. 112, 4, p. 738-739 2 p.

Research output: Contribution to journalLetter

Statins cause intracellular accumulation of amyloid precursor protein, β-secretase-cleaved fragments, and amyloid β-peptide via an isoprenoid-dependent mechanism

Cole, S. L., Grudzien, A., Manhart, I. O., Kelly, B. L., Oakley, H. & Vassar, R., May 13 2005, In : Journal of Biological Chemistry. 280, 19, p. 18755-18770 16 p.

Research output: Contribution to journalArticle

119 Scopus citations

Stresscam: Non-contact measurement of users' emotional states through thermal imaging

Puri, C., Olson, L., Pavlidis, I., Levine, J. & Starren, J., Dec 1 2005, CHI'05 Extended Abstracts on Human Factors in Computing Systems, CHI EA'05. p. 1725-1728 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

101 Scopus citations

The role of nurses in installing telehealth technology in the home

Starren, J., Tsai, C., Bakken, S., Aidala, A., Morin, P. C., Hilliman, C., Weinstock, R. S., Goland, R., Teresi, J. & Shea, S., Jan 1 2005, In : CIN - Computers Informatics Nursing. 23, 4, p. 181-189 9 p.

Research output: Contribution to journalReview article

19 Scopus citations
1 Scopus citations
109 Scopus citations
2004

Acute myeloid leukemia with complex karyotypes and abnormal chromosome 21: Amplification discloses overexpression of APP, ETS2, and ERG genes

Baldus, C. D., Liyanarachchi, S., Mrózek, K., Auer, H., Tanner, S. M., Guimond, M., Ruppert, A. S., Mohamed, N., Davuluri, R. V., Caligiuri, M. A., Bloomfield, C. D. & De La Chapelle, A., Mar 16 2004, In : Proceedings of the National Academy of Sciences of the United States of America. 101, 11, p. 3915-3920 6 p.

Research output: Contribution to journalArticle

129 Scopus citations

A NotI-EcoRV promoter library for studies of genetic and epigenetic alterations in mouse models of human malignancies

Yu, L., Liu, C., Bennett, K., Wu, Y. Z., Dai, Z., Vandeusen, J., Opavsky, R., Raval, A., Trikha, P., Rodriguez, B., Becknell, B., Mao, C., Lee, S., Davuluri, R. V., Leone, G., Van Den Veyver, I. B., Caligiuri, M. A. & Plass, C., Oct 1 2004, In : Genomics. 84, 4, p. 647-660 14 p.

Research output: Contribution to journalArticle

22 Scopus citations

Autonomy gone awry: A cross-cultural study of parents' experiences in neonatal intensive care units

Orfali, K. & Gordon, E. J., Nov 10 2004, In : Theoretical Medicine and Bioethics. 25, 4, p. 329-365 37 p.

Research output: Contribution to journalArticle

62 Scopus citations

BACE1: The β-secreiase enzyme in Alzheimer's disease

Vassar, R., Apr 1 2004, In : Journal of Molecular Neuroscience. 23, 1-2, p. 105-113 9 p.

Research output: Contribution to journalReview article

240 Scopus citations

BACE1 Deficiency Rescues Memory Deficits and Cholinergic Dysfunction in a Mouse Model of Alzheimer's Disease

Ohno, M., Sametsky, E. A., Younkin, L. H., Oakley, H., Younkin, S. G., Citron, M., Vassar, R. & Disterhoft, J. F., Jan 8 2004, In : Neuron. 41, 1, p. 27-33 7 p.

Research output: Contribution to journalArticle

426 Scopus citations

Epigenetic Profiling in Chronic Lymphocytic Leukemia Reveals Novel Methylation Targets

Rush, L. J., Raval, A., Funchain, P., Johnson, A. J., Smith, L., Lucas, D. M., Bembea, M., Liu, T. H., Heerema, N. A., Rassenti, L., Liyanarachchi, S., Davuluri, R., Byrd, J. C. & Plass, C., Apr 1 2004, In : Cancer Research. 64, 7, p. 2424-2433 10 p.

Research output: Contribution to journalArticle

120 Scopus citations

Evaluation of consumer health website accessibility by users with sensory and physical disabilities.

Chiang, M. F. & Starren, J., 2004, In : Medinfo. MEDINFO. 11, Pt 2, p. 1128-1132 5 p.

Research output: Contribution to journalArticle

8 Scopus citations

Expression and regulation of interleukin-23 subunits in human peripheral blood mononuclear cells and hematopoietic cell lines in response to various inducers

Ma, X. T., Zhang, X. J., Zhang, B., Geng, Y. Q., Lin, Y. M., Li, G. & Wu, K. F., Oct 1 2004, In : Cell Biology International. 28, 10, p. 689-697 9 p.

Research output: Contribution to journalArticle

18 Scopus citations

Gene transfer of pro-IL-18 and IL-1β converting enzyme cDNA induces potent antitumor effects in L1210 cells

Zhang, B., Wu, K. F., Lin, Y. M., Ma, X. T., Rao, Q., Zheng, G. G., Cao, Z. Y., Li, G. & Song, Y. H., Apr 2004, In : Leukemia. 18, 4, p. 817-825 9 p.

Research output: Contribution to journalArticle

16 Scopus citations

Genomic structure and alternative splicing of murine R2B receptor protein tyrosine phosphatases (PTPκ, μ, ρ and PCP-2) _apdat 2040211

Besco, J., Popesco, M. C., Davuluri, R. V., Frostholm, A. & Rotter, A., Jun 7 2004, In : BMC Genomics. 5, 14.

Research output: Contribution to journalArticle

18 Scopus citations

Haunted by the "God Committee": Reciprocity does no justice to eliminating social disparities

Gordon, E. J., Dec 1 2004, In : American Journal of Bioethics. 4, 4, p. 23-25 3 p.

Research output: Contribution to journalComment/debate

2 Scopus citations

HemoPDB: Hematopoiesis Promoter Database, an information resource of transcriptional regulation in blood cell development

Pohar, T. T., Sun, H. & Davuluri, R. V., Jan 1 2004, In : Nucleic acids research. 32, DATABASE ISS.

Research output: Contribution to journalArticle

9 Scopus citations

Identifying estrogen receptor α target genes using integrated computational genomics and chromatin immunoprecipitation microarray

Jin, V. X., Leu, Y. W., Liyanarachchi, S., Sun, H., Fan, M., Nephew, K. P., Huang, T. H. M. & Davuluri, R. V., Dec 1 2004, In : Nucleic acids research. 32, 22, p. 6627-6635 9 p.

Research output: Contribution to journalArticle

63 Scopus citations

IL-18 increases invasiveness of HL-60 myeloid leukemia cells: Up-regulation of matrix metalloproteinases-9 (MMP-9) expression

Zhang, B., Wu, K. F., Cao, Z. Y., Rao, Q., Ma, X. T., Zheng, G. G. & Li, G., Jan 1 2004, In : Leukemia Research. 28, 1, p. 91-95 5 p.

Research output: Contribution to journalArticle

42 Scopus citations

Incidence of retinopathy of prematurity from 1996 to 2000: Analysis of a comprehensive New York state patient database

Chiang, M. F., Arons, R. R., Flynn, J. T. & Starren, J. B., Jul 1 2004, In : Ophthalmology. 111, 7, p. 1317-1325 9 p.

Research output: Contribution to journalArticle

91 Scopus citations

Java-based application framework for visualization of gene regulatory region annotations

Sun, H. & Davuluri, R. V., Mar 22 2004, In : Bioinformatics. 20, 5, p. 727-734 8 p.

Research output: Contribution to journalArticle

10 Scopus citations

Loss of estrogen receptor signaling triggers epigenetic silencing of downstream targets in breast cancer

Leu, Y. W., Yan, P. S., Fan, M., Jin, V. X., Liu, J. C., Curran, E. M., Welshons, W. V., Wei, S. H., Davuluri, R. V., Plass, C., Nephew, K. P. & Huang, T. H. M., Nov 15 2004, In : Cancer Research. 64, 22, p. 8184-8192 9 p.

Research output: Contribution to journalArticle

164 Scopus citations

Papillary and follicular thyroid carcinomas show distinctly different microarray expression profiles and can be distinguished by a minimum of five genes

Aldred, M. A., Huang, Y., Liyanarachchi, S., Pellegata, N. S., Gimm, O., Jhiang, S., Davuluri, R. V., De La Chapelle, A. & Eng, C., Dec 1 2004, In : Journal of Clinical Oncology. 22, 17, p. 3531-3539 9 p.

Research output: Contribution to journalArticle

121 Scopus citations

PML is a direct p53 target that modulates p53 effector functions

De Stanchina, E., Querido, E., Narita, M., Davuluri, R. V., Pandolfi, P. P., Ferbeyre, G. & Lowe, S. W., Feb 27 2004, In : Molecular cell. 13, 4, p. 523-535 13 p.

Research output: Contribution to journalArticle

245 Scopus citations

Remote display performance for wireless healthcare computing.

Lai, A. M., Nieh, J., Laine, A. & Starren, J., 2004, In : Medinfo. MEDINFO. 11, Pt 2, p. 1438-1442 5 p.

Research output: Contribution to journalArticle

2 Scopus citations

Role of cancer-associated stromal fibroblasts in metastatic colon cancer to the liver and their expression profiles

Nakagawa, H., Liyanarachchi, S., Davuluri, R. V., Auer, H., Martin, E. W., De La Chapelle, A. & Frankel, W. L., Sep 23 2004, In : Oncogene. 23, 44, p. 7366-7377 12 p.

Research output: Contribution to journalArticle

164 Scopus citations
2003

A cognitive framework for understanding barriers to the productive use of a diabetes home telemedicine system.

Kaufman, D. R., Starren, J., Patel, V. L., Morin, P. C., Hilliman, C., Pevzner, J., Weinstock, R. S., Goland, R. & Shea, S., 2003, In : AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium. p. 356-360 5 p.

Research output: Contribution to journalArticle

23 Scopus citations

A founding locus within the RET proto-oncogene may account for a large proportion of apparently sporadic Hirschsprung disease and a subset of cases of sporadic medullary thyroid carcinoma

Borrego, S., Wright, F. A., Fernández, R. M., Williams, N., López-Alonso, M., Davuluri, R., Antiñolo, G. & Eng, C., Jan 1 2003, In : American Journal of Human Genetics. 72, 1, p. 88-100 13 p.

Research output: Contribution to journalArticle

93 Scopus citations

AGRIS: Arabidopsis Gene Regulatory Information Server, an information resource of Arabidopsis cis-regulatory elements and transcription factors

Davuluri, R. V., Sun, H., Palaniswamy, S. K., Matthews, N., Molina, C., Kurtz, M. & Grotewold, E., Jun 23 2003, In : BMC bioinformatics. 4, 25.

Research output: Contribution to journalArticle

279 Scopus citations
1 Scopus citations

Anti-inflammatory drug therapy alters β-amyloid processing and deposition in an animal model of Alzheimer's disease

Yan, Q., Zhang, J., Liu, H., Babu-Khan, S., Vassar, R., Biere, A. L., Citron, M. & Landreth, G., Aug 20 2003, In : Journal of Neuroscience. 23, 20, p. 7504-7509 6 p.

Research output: Contribution to journalArticle

421 Scopus citations