Life Sciences Graduate Programs

Research Output

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Conference contribution
2019

Characterizing Design Patterns of EHR-Driven Phenotype Extraction Algorithms

Zhong, Y., Rasmussen, L., Deng, Y., Pacheco, J., Smith, M. E., Starren, J. B., Wei, W. Q., Speltz, P., Denny, J., Walton, N., Hripcsak, G., Chute, C. G. & Luo, Y., Jan 21 2019, Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018. Schmidt, H., Griol, D., Wang, H., Baumbach, J., Zheng, H., Callejas, Z., Hu, X., Dickerson, J. & Zhang, L. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 1143-1146 4 p. 8621240. (Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Deep Generative Classifiers for Thoracic Disease Diagnosis with Chest X-ray Images

Mao, C., Yao, L., Pan, Y., Luo, Y. & Zeng, Z., Jan 21 2019, Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018. Schmidt, H., Griol, D., Wang, H., Baumbach, J., Zheng, H., Callejas, Z., Hu, X., Dickerson, J. & Zhang, L. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 1209-1214 6 p. 8621107. (Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Early Prediction of Acute Kidney Injury in Critical Care Setting Using Clinical Notes

Li, Y., Yao, L., Mao, C., Srivastava, A., Jiang, X. & Luo, Y., Jan 21 2019, Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018. Schmidt, H., Griol, D., Wang, H., Baumbach, J., Zheng, H., Callejas, Z., Hu, X., Dickerson, J. & Zhang, L. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 683-686 4 p. 8621574. (Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Early prediction of acute kidney injury in critical care setting using clinical notes and structured multivariate physiological measurements

Sun, M., Baron, J., Dighe, A., Szolovits, P., Wunderink, R. G., Isakova, T. & Luo, Y., Aug 21 2019, MEDINFO 2019: Health and Wellbeing e-Networks for All - Proceedings of the 17th World Congress on Medical and Health Informatics. Seroussi, B., Ohno-Machado, L., Ohno-Machado, L. & Seroussi, B. (eds.). IOS Press, p. 368-372 5 p. (Studies in Health Technology and Informatics; vol. 264).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Implementing a Portable Clinical NLP System with a Common Data Model - A Lisp Perspective

Luo, Y. & Szolovits, P., Jan 21 2019, Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018. Schmidt, H., Griol, D., Wang, H., Baumbach, J., Zheng, H., Callejas, Z., Hu, X., Dickerson, J. & Zhang, L. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 461-466 6 p. 8621521. (Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Rich text formatted EHR narratives: A hidden and ignored trove

Zeng, Z., Zhao, Y., Sun, M., Vo, A. H., Starren, J. B. & Luo, Y., Aug 21 2019, MEDINFO 2019: Health and Wellbeing e-Networks for All - Proceedings of the 17th World Congress on Medical and Health Informatics. Seroussi, B., Ohno-Machado, L., Ohno-Machado, L. & Seroussi, B. (eds.). IOS Press, p. 472-476 5 p. (Studies in Health Technology and Informatics; vol. 264).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Stratified mortality prediction of patients with acute kidney injury in critical care

Xu, Z., Luo, Y., Adekkanattu, P., Ancker, J. S., Jiang, G., Kiefer, R. C., Pacheco, J. A., Rasmussen, L. V., Pathak, J. & Wang, F., Aug 21 2019, MEDINFO 2019: Health and Wellbeing e-Networks for All - Proceedings of the 17th World Congress on Medical and Health Informatics. Seroussi, B., Ohno-Machado, L., Ohno-Machado, L. & Seroussi, B. (eds.). IOS Press, p. 462-466 5 p. (Studies in Health Technology and Informatics; vol. 264).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Supervised Nonnegative Matrix Factorization to Predict ICU Mortality Risk

Chao, G., Mao, C., Wang, F., Zhao, Y. & Luo, Y., Jan 21 2019, Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018. Schmidt, H., Griol, D., Wang, H., Baumbach, J., Zheng, H., Callejas, Z., Hu, X., Dickerson, J. & Zhang, L. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 1189-1194 6 p. 8621403. (Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Using machine learning to integrate socio-behavioral factors in predicting cardiovascular-related mortality risk

Wang, H., Li, Y., Ning, H., Wilkins, J. T., Lloyd-Jones, D. M. & Luo, Y., Aug 21 2019, MEDINFO 2019: Health and Wellbeing e-Networks for All - Proceedings of the 17th World Congress on Medical and Health Informatics. Seroussi, B., Ohno-Machado, L., Ohno-Machado, L. & Seroussi, B. (eds.). IOS Press, p. 433-437 5 p. (Studies in Health Technology and Informatics; vol. 264).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2015

Identification of candidate regulatory SNPs by integrative analysis for prostate cancer genome data

Jung, S., Jin, H. & Davuluri, R. V., Sep 9 2015, BCB 2015 - 6th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics. Association for Computing Machinery, Inc, p. 278-285 8 p. (BCB 2015 - 6th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2014

Comparison of data discretization methods for cross platform transfer of gene-expression based tumor subtyping classifier

Jung, S., Bi, Y. & Davuluri, R. V., Jul 24 2014, 2014 IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2014. Institute of Electrical and Electronics Engineers Inc., 6863918. (2014 IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2014).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2011

Medical providers' dental information needs: A baseline survey

Acharya, A., Mahnke, A., Chyou, P. H., Rottscheit, C. & Starren, J. B., Jan 1 2011, User Centred Networked Health Care - Proceedings of MIE 2011. IOS Press, p. 387-391 5 p. (Studies in Health Technology and Informatics; vol. 169).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations
2010

Data mining of mRNA-Seq and small RNA-Seq data to find microRNA targets

Kim, H. & Davuluri, R. V., Oct 25 2010, 2010 ACM International Conference on Bioinformatics and Computational Biology, ACM-BCB 2010. p. 499-501 3 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Estimating the expression of transcript isoforms from mRNA-seq via nonnegative least squares

Kim, H., Bi, Y. & Davuluri, R. V., Sep 6 2010, 10th IEEE International Conference on Bioinformatics and Bioengineering 2010, BIBE 2010. p. 296-297 2 p. 5521668

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations
2009

Ad-hoc association of pre-determined ZigBee devices

Seeling, P. & Starren, J. B., Dec 31 2009, 2009 6th Annual International Conference on Mobile and Ubiquitous Systems: Networking and Services, MobiQuitous 2009. 5326384

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations

Discovery of regulatory networks in plants by linking promoter and transcription factor databases

Yilmaz, A., Palaniswamy, S., Davuluri, R. & Grotewold, E., Nov 2 2009, OCCBIO'09: 2009 Ohio Collaborative Conference on Bioinformatics. p. 61-64 4 p. 5159163

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Knowledge-driven analysis and data integration for high-throughput biological data

Ochs, M. F., Quackenbush, J., Davuluri, R. & Ressom, H., Dec 1 2009, Pacific Symposium on Biocomputing 2009, PSB 2009. p. 353-355 3 p. (Pacific Symposium on Biocomputing 2009, PSB 2009).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations
2008

In silico prediction of target SNPs affecting miR-mRNA interaction

Sun, H., Nicoloso, M. S., Bhattacharyya, A., Calin, G. A. & Davuluri, R. V., Dec 1 2008, Proceedings - 2008 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW. p. 211-214 4 p. 4686238. (Proceedings - 2008 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Knowledge-driven analysis and data integration for high-throughput biological data

Ochs, M. F., Quackenbush, J. & Davuluri, R., Dec 1 2008, Pacific Symposium on Biocomputing 2008, PSB 2008. p. 137-140 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2007

NEAT-o-games: Ubiquitous activity-based gaming

Fujiki, Y., Kazakos, K., Puri, C., Pavlidis, I., Starren, J. & Levine, J., Jan 1 2007, SIGCHI Conference on Human Factors in Computing Systems 2007, CHI 2007 Extended Abstracts. Association for Computing Machinery, p. 2369-2374 6 p. (Conference on Human Factors in Computing Systems - Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

18 Scopus citations
2006

Children as design partners in the development of a support system for children with cancer

Ruland, C. M., Slaughter, L., Starren, J. & Vatne, T. M., Jan 1 2006, Consumer-Centered Computer-Supported Care for Healthy People - Proceedings of NI 2006: The 9th International Congress on Nursing Informatics. IOS Press, p. 80-85 6 p. (Studies in Health Technology and Informatics; vol. 122).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

5 Scopus citations

Presentation Discovery: Building a better icon

Payne, P. R. O. & Starren, J., Dec 1 2006, CHI'06 Extended Abstracts on Human Factors in Computing Systems, CHI EA'06. p. 1223-1228 6 p. (Conference on Human Factors in Computing Systems - Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations
2005

Stresscam: Non-contact measurement of users' emotional states through thermal imaging

Puri, C., Olson, L., Pavlidis, I., Levine, J. & Starren, J., Dec 1 2005, CHI'05 Extended Abstracts on Human Factors in Computing Systems, CHI EA'05. p. 1725-1728 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

97 Scopus citations