Research Output

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Review article
2020

Celebrating the Silver Anniversary of the North American Testis Workshop

Robaire, B., Eddy, M., Goldberg, E., Griswold, M., Heckert, L., McCarrey, J., Orgebin-Crist, M. C., Papadopoulos, V., Trasler, J., Wright, W., Yan, W. & Zirkin, B., Jan 1 2020, (Accepted/In press) In : Andrology.

Research output: Contribution to journalReview article

Open Access
2019

A primer on pheromone signaling in Caenorhabditis elegans for systems biologists

McGrath, P. T. & Ruvinsky, I., Feb 2019, In : Current Opinion in Systems Biology. 13, p. 23-30 8 p.

Research output: Contribution to journalReview article

3 Scopus citations

Chromatin's physical properties shape the nucleus and its functions

Stephens, A. D., Banigan, E. J. & Marko, J. F., Jun 2019, In : Current Opinion in Cell Biology. 58, p. 76-84 9 p.

Research output: Contribution to journalReview article

7 Scopus citations

How do DNA-bound proteins leave their binding sites? The role of facilitated dissociation

Erbaş, A. & Marko, J. F., Dec 2019, In : Current Opinion in Chemical Biology. 53, p. 118-124 7 p.

Research output: Contribution to journalReview article

1 Scopus citations

Identification and Quantification of Proteoforms by Mass Spectrometry

Schaffer, L. V., Millikin, R. J., Miller, R. M., Anderson, L. C., Fellers, R. T., Ge, Y., Kelleher, N. L., LeDuc, R. D., Liu, X., Payne, S. H., Sun, L., Thomas, P. M., Tucholski, T., Wang, Z., Wu, S., Wu, Z., Yu, D., Shortreed, M. R. & Smith, L. M., May 2019, In : Proteomics. 19, 10, 1800361.

Research output: Contribution to journalReview article

20 Scopus citations

Spindle assembly and chromosome dynamics during oocyte meiosis

Mullen, T. J., Davis-Roca, A. C. & Wignall, S. M., Oct 2019, In : Current Opinion in Cell Biology. 60, p. 53-59 7 p.

Research output: Contribution to journalReview article

1 Scopus citations

The Expanding and Unexpected Functions of Mitochondria Contact Sites

Lackner, L. L., Jul 2019, In : Trends in Cell Biology. 29, 7, p. 580-590 11 p.

Research output: Contribution to journalReview article

10 Scopus citations

Unwinding chromatin at the right places: How BAF is targeted to specific genomic locations during development

Ho, P. J., Lloyd, S. M. & Bao, X., Jan 1 2019, In : Development (Cambridge). 146, 19, dev178780.

Research output: Contribution to journalReview article

Open Access
2018

Chalkophores

Kenney, G. E. & Rosenzweig, A. C., Jun 20 2018, In : Annual review of biochemistry. 87, p. 645-676 32 p.

Research output: Contribution to journalReview article

7 Scopus citations

Checkpoint checkmate: Microbiota modulation of cancer immunotherapy

Keen, E. C., Crofts, T. S. & Dantas, G., Sep 2018, In : Clinical chemistry. 64, 9, p. 1280-1283 4 p.

Research output: Contribution to journalReview article

1 Scopus citations

Evolutionary tuning impacts the design of bacterial tRNAs for the incorporation of unnatural amino acids by ribosomes

Uhlenbeck, O. C. & Schrader, J. M., Oct 2018, In : Current Opinion in Chemical Biology. 46, p. 138-145 8 p.

Research output: Contribution to journalReview article

3 Scopus citations

How many human proteoforms are there?

Aebersold, R., Agar, J. N., Amster, I. J., Baker, M. S., Bertozzi, C. R., Boja, E. S., Costello, C. E., Cravatt, B. F., Fenselau, C., Garcia, B. A., Ge, Y., Gunawardena, J., Hendrickson, R. C., Hergenrother, P. J., Huber, C. G., Ivanov, A. R., Jensen, O. N., Jewett, M. C., Kelleher, N. L., Kiessling, L. L. & 33 others, Krogan, N. J., Larsen, M. R., Loo, J. A., Ogorzalek Loo, R. R., Lundberg, E., Maccoss, M. J., Mallick, P., Mootha, V. K., Mrksich, M., Muir, T. W., Patrie, S. M., Pesavento, J. J., Pitteri, S. J., Rodriguez, H., Saghatelian, A., Sandoval, W., Schlüter, H., Sechi, S., Slavoff, S. A., Smith, L. M., Snyder, M. P., Thomas, P. M., Uhlén, M., Van Eyk, J. E., Vidal, M., Walt, D. R., White, F. M., Williams, E. R., Wohlschlager, T., Wysocki, V. H., Yates, N. A., Young, N. L. & Zhang, B., Feb 14 2018, In : Nature Chemical Biology. 14, 3, p. 206-214 9 p.

Research output: Contribution to journalReview article

109 Scopus citations

Methanobactins: Maintaining copper homeostasis in methanotrophs and beyond

Kenney, G. E. & Rosenzweig, A. C., Jan 1 2018, In : Journal of Biological Chemistry. 293, 13, p. 4606-4615 10 p.

Research output: Contribution to journalReview article

15 Scopus citations

Natural products from thioester reductase containing biosynthetic pathways

Mullowney, M., McClure, R. A., Robey, M. T., Kelleher, N. L. & Thomson, R. J., Sep 1 2018, In : Natural product reports. 35, 9, p. 847-878 32 p.

Research output: Contribution to journalReview article

8 Scopus citations

Selective substrate uptake: The role of ATP-binding cassette (ABC) importers in pathogenesis

Tanaka, K. J., Song, S., Mason, K. & Pinkett, H. W., Apr 2018, In : Biochimica et Biophysica Acta - Biomembranes. 1860, 4, p. 868-877 10 p.

Research output: Contribution to journalReview article

26 Scopus citations

Transcriptional and chromatin regulation in interferon and innate antiviral gene expression

Au-Yeung, N. & Horvath, C. M., Dec 2018, In : Cytokine and Growth Factor Reviews. 44, p. 11-17 7 p.

Research output: Contribution to journalReview article

5 Scopus citations
2017

A tale of two methane monooxygenases

Ross, M. O. & Rosenzweig, A. C., Apr 1 2017, In : Journal of Biological Inorganic Chemistry. 22, 2-3, p. 307-319 13 p.

Research output: Contribution to journalReview article

49 Scopus citations

Epigenetic transcriptional memory

D’Urso, A. & Brickner, J. H., Jun 1 2017, In : Current Genetics. 63, 3, p. 435-439 5 p.

Research output: Contribution to journalReview article

42 Scopus citations

Genetic and epigenetic control of the spatial organization of the genome

Brickner, J., Feb 1 2017, In : Molecular biology of the cell. 28, 3, p. 364-369 6 p.

Research output: Contribution to journalReview article

6 Scopus citations

Genome-wide Mapping of the Nucleosome Landscape by Micrococcal Nuclease and Chemical Mapping

Voong, L. N., Xi, L., Wang, J. & Wang, X., Aug 1 2017, In : Trends in Genetics. 33, 8, p. 495-507 13 p.

Research output: Contribution to journalReview article

8 Scopus citations

Methanobactins: From genome to function

Dassama, L. M. K., Kenney, G. E. & Rosenzweig, A. C., Jan 2017, In : Metallomics. 9, 1, p. 7-20 14 p.

Research output: Contribution to journalReview article

19 Scopus citations

MicroRNA function in Drosophila melanogaster

Carthew, R. W., Agbu, P. & Giri, R., May 2017, In : Seminars in Cell and Developmental Biology. 65, p. 29-37 9 p.

Research output: Contribution to journalReview article

19 Scopus citations

Natural diversity facilitates the discovery of conserved chemotherapeutic response mechanisms

Zdraljevic, S. & Andersen, E. C., Dec 2017, In : Current Opinion in Genetics and Development. 47, p. 41-47 7 p.

Research output: Contribution to journalReview article

4 Scopus citations

Next-generation approaches to understand and combat the antibiotic resistome

Crofts, T. S., Gasparrini, A. J. & Dantas, G., Jun 13 2017, In : Nature Reviews Microbiology. 15, 7, p. 422-434 13 p.

Research output: Contribution to journalReview article

130 Scopus citations

Rethinking HSF1 in Stress, Development, and Organismal Health

Li, J., Labbadia, J. & Morimoto, R. I., Dec 2017, In : Trends in Cell Biology. 27, 12, p. 895-905 11 p.

Research output: Contribution to journalReview article

53 Scopus citations

Shaping proteostasis at the cellular, tissue, and organismal level

Sala, A. J., Bott, L. C. & Morimoto, R. I., May 1 2017, In : Journal of Cell Biology. 216, 5, p. 1231-1241 11 p.

Research output: Contribution to journalReview article

67 Scopus citations

Structural Insights into the Eukaryotic Transcription Initiation Machinery

Nogales, E., Louder, R. K. & He, Y., May 22 2017, In : Annual Review of Biophysics. 46, p. 59-83 25 p.

Research output: Contribution to journalReview article

31 Scopus citations

The role of Notch signaling in the mammalian ovary

Vanorny, D. A. & Mayo, K. E., Jan 1 2017, In : Reproduction. 153, 6, p. R187-R204

Research output: Contribution to journalReview article

18 Scopus citations
2016

Biocatalysts for methane conversion: big progress on breaking a small substrate

Lawton, T. J. & Rosenzweig, A. C., Dec 1 2016, In : Current Opinion in Chemical Biology. 35, p. 142-149 8 p.

Research output: Contribution to journalReview article

6 Scopus citations

Cryo-EM in the study of challenging systems: the human transcription pre-initiation complex

Nogales, E., Louder, R. K. & He, Y., Oct 1 2016, In : Current Opinion in Structural Biology. 40, p. 120-127 8 p.

Research output: Contribution to journalReview article

14 Scopus citations

Epiproteomics: Quantitative analysis of histone marks and codes by mass spectrometry

Zheng, Y., Huang, X. & Kelleher, N. L., Aug 1 2016, In : Current Opinion in Chemical Biology. 33, p. 142-150 9 p.

Research output: Contribution to journalReview article

27 Scopus citations

Eukaryotic transcription initiation machinery visualized at molecular level

Han, Y. & He, Y., Oct 19 2016, In : Transcription. 7, 5, p. 203-208 6 p.

Research output: Contribution to journalReview article

2 Scopus citations

Progress in Top-Down Proteomics and the Analysis of Proteoforms

Toby, T. K., Fornelli, L. & Kelleher, N. L., Jun 12 2016, In : Annual Review of Analytical Chemistry. 9, p. 499-519 21 p.

Research output: Contribution to journalReview article

176 Scopus citations

Prospects and challenges of CRISPR/Cas genome editing for the study and control of neglected vector-borne nematode diseases

Zamanian, M. & Andersen, E. C., Sep 1 2016, In : FEBS Journal. p. 3204-3221 18 p.

Research output: Contribution to journalReview article

18 Scopus citations

Systems Proteomics View of the Endogenous Human Claudin Protein Family

Liu, F., Koval, M., Ranganathan, S., Fanayan, S., Hancock, W. S., Lundberg, E. K., Beavis, R. C., Lane, L., Duek, P., McQuade, L., Kelleher, N. L. & Baker, M. S., Feb 5 2016, In : Journal of Proteome Research. 15, 2, p. 339-359 21 p.

Research output: Contribution to journalReview article

10 Scopus citations

Transcription factors dynamically control the spatial organization of the yeast genome

Randise-Hinchliff, C. & Brickner, J. H., Jul 3 2016, In : Nucleus. 7, 4, p. 369-374 6 p.

Research output: Contribution to journalReview article

13 Scopus citations
2015

Antibiotics and the developing infant gut microbiota and resistome

Gibson, M. K., Crofts, T. S. & Dantas, G., Oct 1 2015, In : Current Opinion in Microbiology. 27, p. 51-56 6 p.

Research output: Contribution to journalReview article

71 Scopus citations

Forces, fluctuations, and self-organization in the nucleus

Pederson, T., King, M. C. & Marko, J. F., Nov 5 2015, In : Molecular biology of the cell. 26, 22, p. 3915-3919 5 p.

Research output: Contribution to journalReview article

7 Scopus citations

LGP2 synergy with MDA5 in RLR-mediated RNA recognition and antiviral signaling

Bruns, A. M. & Horvath, C. M., Dec 3 2015, In : Cytokine. 74, 2, p. 198-206 9 p.

Research output: Contribution to journalReview article

41 Scopus citations

Supersaturation is a major driving force for protein aggregation in neurodegenerative diseases

Ciryam, P., Kundra, R., Morimoto, R. I., Dobson, C. M. & Vendruscolo, M., Feb 2015, In : Trends in Pharmacological Sciences. 36, 2, p. 72-77 6 p.

Research output: Contribution to journalReview article

69 Scopus citations

The biology of proteostasis in aging and disease

Labbadia, J. & Morimoto, R. I., Jun 2 2015, In : Annual review of biochemistry. 84, p. 435-464 30 p.

Research output: Contribution to journalReview article

438 Scopus citations

The Chemical Biology of Molecular Chaperones - Implications for Modulation of Proteostasis

Brandvold, K. R. & Morimoto, R. I., Sep 11 2015, In : Journal of Molecular Biology. 427, 18, p. 2931-2947 17 p.

Research output: Contribution to journalReview article

53 Scopus citations

The laboratory domestication of Caenorhabditis elegans

Sterken, M. G., Snoek, L. B., Kammenga, J. E. & Andersen, E. C., May 1 2015, In : Trends in Genetics. 31, 5, p. 224-231 8 p.

Research output: Contribution to journalReview article

57 Scopus citations

Timing is everything: Fine-tuned molecular machines orchestrate paramyxovirus entry

Bose, S., Jardetzky, T. S. & Lamb, R. A., May 1 2015, In : Virology. 479-480, p. 518-531 14 p.

Research output: Contribution to journalReview article

48 Scopus citations
2014

Activation of paramyxovirus membrane fusion and virus entry

Jardetzky, T. S. & Lamb, R. A., Apr 2014, In : Current Opinion in Virology. 5, 1, p. 24-33 10 p.

Research output: Contribution to journalReview article

78 Scopus citations

Caenorhabditis elegans as a model system for studying non-cellautonomous mechanisms in protein-misfolding diseases

Nussbaum-Krammer, C. I. & Morimoto, R. I., Jan 1 2014, In : DMM Disease Models and Mechanisms. 7, 1, p. 31-39 9 p.

Research output: Contribution to journalReview article

33 Scopus citations

Deep and quantitative top-down proteomics in clinical and translational research

Kelleher, N. L., Thomas, P. M., Ntai, I., Compton, P. D. & Leduc, R. D., Jan 1 2014, In : Expert Review of Proteomics. 11, 6, p. 649-651 3 p.

Research output: Contribution to journalReview article

28 Scopus citations

Diversity in ABC transporters: Type I, II and III importers

Rice, A. J., Park, A. & Pinkett, H. W., Sep 1 2014, In : Critical Reviews in Biochemistry and Molecular Biology. 49, 5, p. 426-437 12 p.

Research output: Contribution to journalReview article

60 Scopus citations

How the nucleus copes with proteotoxic stress

Shibata, Y. & Morimoto, R. I., May 19 2014, In : Current Biology. 24, 10, p. R463-R474

Research output: Contribution to journalReview article

30 Scopus citations

Inhibin at 90: From discovery to clinical application, a historical review

Makanji, Y., Zhu, J., Mishra, R. K., Holmquist, C., Wong, W. P. S., Schwartz, N. B., Mayo, K. E. & Woodruff, T. K., Jan 1 2014, In : Endocrine reviews. 35, 5, p. 747-794 48 p.

Research output: Contribution to journalReview article

71 Scopus citations