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2020

Draft genomes of two artocarpus plants, jackfruit (A. heterophyllus) and breadfruit (A. altilis)

Sahu, S. K., Liu, M., Yssel, A., Kariba, R., Muthemba, S., Jiang, S., Song, B., Hendre, P. S., Muchugi, A., Jamnadass, R., Kao, S. M., Featherston, J., Zerega, N. J. C., Xu, X., Yang, H., Van Deynze, A., Van de Peer, Y., Liu, X. & Liu, H., Jan 2020, In : Genes. 11, 1, 27.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations
2019

A cell separation checkpoint that enforces the proper order of late cytokinetic events

Brace, J. L., Doerfler, M. D. & Weiss, E. L., Jan 1 2019, In : Journal of Cell Biology. 218, 1, p. 150-170 21 p.

Research output: Contribution to journalArticle

2 Scopus citations

Delimitation of the new tribe parartocarpeae (Moraceae) is supported by a 333-gene phylogeny and resolves tribal level moraceae taxonomy

Zerega, N. J. C. & Gardner, E. M., Jan 23 2019, In : Phytotaxa. 388, 4, p. 253-265 13 p.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations

Genetic Diversity of Bangladeshi Jackfruit (Artocarpus heterophyllus) over Time and Across Seedling Sources

Witherup, C., Zuberi, M. I., Hossain, S. & Zerega, N. J. C., Jun 15 2019, In : Economic Botany. 73, 2, p. 233-248 16 p.

Research output: Contribution to journalArticle

1 Scopus citations

Identification of pathways that regulate circadian rhythms using a larval zebrafish small molecule screen

Mosser, E. A., Chiu, C. N., Tamai, T. K., Hirota, T., Li, S., Hui, M., Wang, A., Singh, C., Giovanni, A., Kay, S. A. & Prober, D. A., Dec 1 2019, In : Scientific reports. 9, 1, 12405.

Research output: Contribution to journalArticle

Open Access
4 Scopus citations

Reproductive losses due to climate change-induced earlier flowering are not the primary threat to plant population viability in a perennial herb

Iler, A. M., Compagnoni, A., Inouye, D. W., Williams, J. L., Caradonna, P. J., Anderson, A. & Miller, T. E. X., Jul 2019, In : Journal of Ecology. 107, 4, p. 1931-1943 13 p.

Research output: Contribution to journalArticle

6 Scopus citations

Two-year bee, or not two-year bee? How voltinism is affected by temperature and season length in a high-elevation solitary bee

Forrest, J. R. K., Cross, R. & Caradonna, P. J., Apr 1 2019, In : American Naturalist. 193, 4, p. 560-574 15 p.

Research output: Contribution to journalArticle

9 Scopus citations
2018

A flower in fruit’s clothing: Pollination of jackfruit (artocarpus heterophyllus, moraceae) by a new species of gall midge, clinodiplosis ultracrepidata sp. Nov. (Diptera: Cecidomyiidae)

Gardner, E. M., Gagné, R. J., Kendra, P. E., Montgomery, W. S., Raguso, R. A., McNeil, T. T. & Zerega, N. J. C., May 1 2018, In : International Journal of Plant Sciences. 179, 5, p. 350-367 18 p.

Research output: Contribution to journalArticle

9 Scopus citations

Allele phasing has minimal impact on phylogenetic reconstruction from targeted nuclear gene sequences in a case study of Artocarpus

Kates, H. R., Johnson, M. G., Gardner, E. M., Zerega, N. J. C. & Wickett, N. J., Mar 2018, In : American Journal of Botany. 105, 3, p. 404-416 13 p.

Research output: Contribution to journalArticle

11 Scopus citations

A transcriptome screen for positive selection in domesticated breadfruit and its wild relatives (Artocarpus spp.)

Laricchia, K. M., Johnson, M. G., Ragone, D., Williams, E. W., Zerega, N. J. C. & Wickett, N. J., May 2018, In : American Journal of Botany. 105, 5, p. 915-926 12 p.

Research output: Contribution to journalArticle

1 Scopus citations
10 Scopus citations

Origin and diversity of an underutilized fruit tree crop, cempedak (Artocarpus integer, Moraceae)

Wang, M. M. H., Gardner, E. M., Chung, R. C. K., Chew, M. Y., Milan, A. R., Pereira, J. T. & Zerega, N. J. C., May 2018, In : American Journal of Botany. 105, 5, p. 898-914 17 p.

Research output: Contribution to journalArticle

1 Scopus citations
2017

A new subspecies of sea snake, hydrophis platurus xanthos, from Golfo Dulce, Costa Rica

Bessesen, B. L. & Galbreath, G. J., 2017, In : ZooKeys. 2017, 686, p. 109-123 15 p.

Research output: Contribution to journalArticle

1 Scopus citations

Detrending phenological time series improves climate-phenology analyses and reveals evidence of plasticity

Iler, A. M., Inouye, D. W., Schmidt, N. M. & Høye, T. T., Mar 1 2017, In : Ecology. 98, 3, p. 647-655 9 p.

Research output: Contribution to journalArticle

18 Scopus citations

Molecular, morphological, and biogeographic perspectives on the classification of acrobolboideae (Acrobolbaceae, marchantiophyta)

Briscoe, L. R. E., Zerega, N. J. C., Lumbsch, H. T., Stech, M., Kraichak, E., Von Konrat, M. J., Engel, J. J. & Wickett, N. J., Aug 29 2017, In : Phytotaxa. 319, 1, p. 56-70 15 p.

Research output: Contribution to journalArticle

2 Scopus citations

Out of Borneo: Biogeography, phylogeny and divergence date estimates of Artocarpus (Moraceae)

Williams, E. W., Gardner, E. M., Harris, R., Chaveerach, A., Pereira, J. T. & Zerega, N. J. C., 2017, In : Annals of botany. 119, 4, p. 611-627 17 p.

Research output: Contribution to journalArticle

24 Scopus citations

Phylogeny and biogeography of Maclura (Moraceae) and the origin of an anachronistic fruit

Gardner, E. M., Sarraf, P., Williams, E. W. & Zerega, N. J. C., Dec 2017, In : Molecular Phylogenetics and Evolution. 117, p. 49-59 11 p.

Research output: Contribution to journalArticle

6 Scopus citations
2016

A Zebrafish Genetic Screen Identifies Neuromedin U as a Regulator of Sleep/Wake States

Chiu, C. N., Rihel, J., Lee, D. A., Singh, C., Mosser, E. A., Chen, S., Sapin, V., Pham, U., Engle, J., Niles, B. J., Montz, C. J., Chakravarthy, S., Zimmerman, S., Salehi-Ashtiani, K., Vidal, M., Schier, A. F. & Prober, D. A., Feb 17 2016, In : Neuron. 89, 4, p. 842-856 15 p.

Research output: Contribution to journalArticle

34 Scopus citations

Development of course-based undergraduate research experiences using a design-based approach

Mordacq, J. C., Drane, D. L., Swarat, S. & Lo, S. M., 2016, In : Journal of College Science Teaching. 46, 4, p. 64-75 12 p.

Research output: Contribution to journalArticle

Frost sensitivity of leaves and flowers of subalpine plants is related to tissue type and phenology

Caradonna, P. J. & Bain, J. A., Jan 1 2016, In : Journal of Ecology. 104, 1, p. 55-64 10 p.

Research output: Contribution to journalArticle

17 Scopus citations

HybPiper: Extracting Coding Sequence and Introns for Phylogenetics from High-Throughput Sequencing Reads Using Target Enrichment

Johnson, M. G., Gardner, E. M., Liu, Y., Medina, R., Goffinet, B., Shaw, A. J., Zerega, N. J. C. & Wickett, N. J., Jul 1 2016, In : Applications in Plant Sciences. 4, 7, 1600016.

Research output: Contribution to journalArticle

68 Scopus citations

Low-coverage, whole-genome sequencing of Artocarpus camansi (Moraceae) for phylogenetic marker development and gene discovery

Gardner, E. M., Johnson, M. G., Ragone, D., Wickett, N. J. & Zerega, N. J. C., Jul 1 2016, In : Applications in Plant Sciences. 4, 7, 1600017.

Research output: Contribution to journalArticle

15 Scopus citations

QRFP and its receptors regulate locomotor activity and sleep in zebrafish

Chen, A., Chiu, C. N., Mosser, E. A., Kahn, S., Spence, R. & Prober, D. A., Feb 10 2016, In : Journal of Neuroscience. 36, 6, p. 1823-1840 18 p.

Research output: Contribution to journalArticle

23 Scopus citations

Responses of sequential and hierarchical phenological events to warming and cooling in alpine meadows

Li, X., Jiang, L., Meng, F., Wang, S., Niu, H., Iler, A. M., Duan, J., Zhang, Z., Luo, C., Cui, S., Zhang, L., Li, Y., Wang, Q., Zhou, Y., Bao, X., Dorji, T., Li, Y., Peñuelas, J., Du, M., Zhao, X. & 2 others, Zhao, L. & Wang, G., Aug 18 2016, In : Nature communications. 7, 12489.

Research output: Contribution to journalArticle

23 Scopus citations

Selecting superior de novo transcriptome assemblies: Lessons learned by leveraging the best plant genome

Honaas, L. A., Wafula, E. K., Wickett, N. J., Der, J. P., Zhang, Y., Edger, P. P., Altman, N. S., Chris Pires, J., Leebens-Mack, J. H. & DePamphilis, C. W., Jan 5 2016, In : PloS one. 11, 1, e0146062.

Research output: Contribution to journalArticle

54 Scopus citations

Sex-specific responses to climate change in plants alter population sex ratio and performance

Petry, W. K., Soule, J. D., Iler, A. M., Chicas-Mosier, A., Inouye, D. W., Miller, T. E. X. & Mooney, K. A., Jul 1 2016, In : Science. 353, 6294, p. 69-71 3 p.

Research output: Contribution to journalArticle

32 Scopus citations

The effect of demographic correlations on the stochastic population dynamics of perennial plants

Compagnoni, A., Bibian, A. J., Ochocki, B. M., Rogers, H. S., Schultz, E. L., Sneck, M. E., Elderd, B. D., Iler, A. M., Inouye, D. W., Jacquemyn, H. & Miller, T. E. X., Nov 1 2016, In : Ecological Monographs. 86, 4, p. 480-494 15 p.

Research output: Contribution to journalArticle

18 Scopus citations

Toward a global view of breadfruit genetic diversity

Zerega, N. J. C. & Ragone, D., Jan 1 2016, In : Tropical Agriculture. 93, Special Issue 1, p. 77-91 15 p.

Research output: Contribution to journalArticle

1 Scopus citations
2015

Chloroplast Microsatellite Markers for Artocarpus (Moraceae) Developed from Transcriptome Sequences

Gardner, E. M., Laricchia, K. M., Murphy, M., Ragone, D., Scheffler, B. E., Simpson, S., Williams, E. W. & Zerega, N. J. C., Sep 1 2015, In : Applications in Plant Sciences. 3, 9, 1500049.

Research output: Contribution to journalArticle

8 Scopus citations

Diversity in the breadfruit complex (Artocarpus, Moraceae): genetic characterization of critical germplasm

Zerega, N., Wiesner-Hanks, T., Ragone, D., Irish, B., Scheffler, B., Simpson, S. & Zee, F., Nov 23 2015, In : Tree Genetics and Genomes. 11, 1, p. 1-26 26 p.

Research output: Contribution to journalArticle

17 Scopus citations

Melatonin Is required for the circadian regulation of sleep

Gandhi, A. V., Mosser, E. A., Oikonomou, G. & Prober, D. A., Mar 18 2015, In : Neuron. 85, 6, p. 1193-1199 7 p.

Research output: Contribution to journalArticle

89 Scopus citations

Parasitic Plants Striga and Phelipanche Dependent upon Exogenous Strigolactones for Germination Have Retained Genes for Strigolactone Biosynthesis

Das, M., Fernández-Aparicio, M., Yang, Z., Huang, K., Wickett, N. J., Alford, S., Wafula, E. K., dePamphilis, C. W., Bouwmeester, H., Timko, M. P., Yoder, J. I. & Westwood, J. H., May 18 2015, In : American Journal of Plant Sciences. 6, p. 1151-1166

Research output: Contribution to journalArticle

Phenological responses to climate change do not exhibit phylogenetic signal in a subalpine plant community

Caradonna, P. J. & Inouye, D. W., Feb 1 2015, In : Ecology. 96, 2, p. 355-361 7 p.

Research output: Contribution to journalArticle

28 Scopus citations

Phenological shifts and the fate of mutualisms

Rafferty, N. E., Caradonna, P. J. & Bronstein, J. L., Jan 1 2015, In : Oikos. 124, 1, p. 14-21 8 p.

Research output: Contribution to journalArticle

71 Scopus citations
2014

A universal primer set to amplify the cytochrome c oxidase subunit I gene in bears

Shahzadi, I., Janjua, S., Abbas, F. & Galbreath, G. J., May 1 2014, In : Ursus. 25, 1, p. 73-77 5 p.

Research output: Contribution to journalArticle

1 Scopus citations

Phylotranscriptomic analysis of the origin and early diversification of land plants

Wickett, N. J., Mirarab, S., Nguyen, N., Warnow, T., Carpenter, E., Matasci, N., Ayyampalayam, S., Barker, M. S., Burleigh, J. G., Gitzendanner, M. A., Ruhfel, B. R., Wafula, E., Der, J. P., Graham, S. W., Mathews, S., Melkonian, M., Soltis, D. E., Soltis, P. S., Miles, N. W., Rothfels, C. J. & 22 others, Pokorny, L., Shaw, A. J., De Gironimo, L., Stevenson, D. W., Surek, B., Villarreal, J. C., Roure, B., Philippe, H., De Pamphilis, C. W., Chen, T., Deyholos, M. K., Baucom, R. S., Kutchan, T. M., Augustin, M. M., Wang, J., Zhang, Y., Tian, Z., Yan, Z., Wu, X., Sun, X., Wong, G. K. S. & Leebens-Mack, J., Nov 11 2014, In : Proceedings of the National Academy of Sciences of the United States of America. 111, 45, p. E4859-E4868

Research output: Contribution to journalArticle

606 Scopus citations

Shifts in flowering phenology reshape a subalpine plant community

CaraDonna, P. J., Iler, A. M. & Inouye, D. W., Apr 1 2014, In : Proceedings of the National Academy of Sciences of the United States of America. 111, 13, p. 4916-4921 6 p.

Research output: Contribution to journalArticle

220 Scopus citations

Transcriptomic Insights into the Life History of Bolidophytes, the Sister Lineage to Diatoms

Kessenich, C. R., Ruck, E. C., Schurko, A. M., Wickett, N. J. & Alverson, A. J., Dec 1 2014, In : Journal of Phycology. 50, 6, p. 977-983 7 p.

Research output: Contribution to journalArticle

11 Scopus citations
2013

Application of qRT-PCR and RNA-Seq analysis for the identification of housekeeping genes useful for normalization of gene expression values during Striga hermonthica development

Fernández-Aparicio, M., Huang, K., Wafula, E. K., Honaas, L. A., Wickett, N. J., Timko, M. P., Depamphilis, C. W., Yoder, J. I. & Westwood, J. H., Apr 1 2013, In : Molecular Biology Reports. 40, 4, p. 3395-3407 13 p.

Research output: Contribution to journalArticle

18 Scopus citations

Characterization of the basal angiosperm Aristolochia fimbriata: A potential experimental system for genetic studies

Bliss, B. J., Wanke, S., Barakat, A., Ayyampalayam, S., Wickett, N., Wall, P. K., Jiao, Y., Landherr, L., Ralph, P. E., Hu, Y., Neinhuis, C., Leebens-Mack, J., Arumuganathan, K., Clifton, S. W., Maximova, S. N., Ma, H. & dePamphilis, C. W., Jan 24 2013, In : BMC Plant Biology. 13, 1, 13.

Research output: Contribution to journalArticle

17 Scopus citations

Development of microsatellite loci in Artocarpus altilis (Moraceae) and cross-amplification in congeneric species

Witherup, C. E., Ragone, D., Wiesner-Hanks, T., Irish, B., Scheffler, B., Simpson, S., Zee, F., Zuberi, M. I. & Zerega, N. JC., 2013, In : Applications in Plant Science. 1

Research output: Contribution to journalArticle

Effects of climate change on mast-flowering cues in a clonal montane herb, Veratrum tenuipetalum (Melanthiaceae)

Iler, A. M. & Inouye, D. W., Mar 1 2013, In : American Journal of Botany. 100, 3, p. 519-525 7 p.

Research output: Contribution to journalArticle

16 Scopus citations

Evolution of a horizontally acquired legume gene, albumin 1, in the parasitic plant Phelipanche aegyptiaca and related species

Zhang, Y., Fernandez-Aparicio, M., Wafula, E. K., Das, M., Jiao, Y., Wickett, N. J., Honaas, L. A., Ralph, P. E., Wojciechowski, M. F., Timko, M. P., Yoder, J. I., Westwood, J. H. & Depamphilis, C. W., 2013, In : BMC Evolutionary Biology. 13, 1, 48.

Research output: Contribution to journalArticle

36 Scopus citations

Functional genomics of a generalist parasitic plant: Laser microdissection of host-parasite interface reveals host-specific patterns of parasite gene expression

Honaas, L. A., Wafula, E. K., Yang, Z., Der, J. P., Wickett, N. J., Altman, N. S., Taylor, C. G., Yoder, J. I., Timko, M. P., Westwood, J. H. & dePamphilis, C. W., Jan 9 2013, In : BMC Plant Biology. 13, 1, 9.

Research output: Contribution to journalArticle

33 Scopus citations

Long-term trends mask variation in the direction and magnitude of short-term phenological shifts

Iler, A. M., Høye, T. T., Inouye, D. W. & Schmidt, N. M., Jul 1 2013, In : American Journal of Botany. 100, 7, p. 1398-1406 9 p.

Research output: Contribution to journalArticle

31 Scopus citations

Maintenance of temporal synchrony between syrphid flies and floral resources despite differential phenological responses to climate

Iler, A. M., Inouye, D. W., Høye, T. T., Miller-Rushing, A. J., Burkle, L. A. & Johnston, E. B., Aug 1 2013, In : Global Change Biology. 19, 8, p. 2348-2359 12 p.

Research output: Contribution to journalArticle

64 Scopus citations

Mechanisms of functional and physical genome reduction in photosynthetic and nonphotosynthetic parasitic plants of the broomrape family

Wicke, S., Müller, K. F., de Pamphilis, C. W., Quandt, D., Wickett, N. J., Zhang, Y., Renner, S. S. & Schneeweiss, G. M., Oct 1 2013, In : Plant Cell. 25, 10, p. 3711-3725 15 p.

Research output: Contribution to journalArticle

140 Scopus citations

Nonlinear flowering responses to climate: Are species approaching their limits of phenological change?

Iler, A. M., Høye, T. T., Inouye, D. W. & Schmidt, N. M., Aug 19 2013, In : Philosophical Transactions of the Royal Society B: Biological Sciences. 368, 1624

Research output: Contribution to journalArticle

76 Scopus citations

Phenological overlap of interacting species in a changing climate: An assessment of available approaches

Rafferty, N. E., Caradonna, P. J., Burkle, L. A., Iler, A. M. & Bronstein, J. L., Sep 1 2013, In : Ecology and Evolution. 3, 9, p. 3183-3193 11 p.

Research output: Contribution to journalArticle

47 Scopus citations