Surgery, Thoracic Surgery Division

Research Output

DNA methylation biomarkers discovered in silico detect cancer in liquid biopsies from non-small cell lung cancer patients

Vrba, L., Oshiro, M. M., Kim, S. S., Garland, L. L., Placencia, C., Mahadevan, D., Nelson, M. A. & Futscher, B. W., Apr 2 2020, In : Epigenetics. 15, 4, p. 419-430 12 p.

Research output: Contribution to journalArticle

Open Access

Does Foxp3+ T cell-mediated lung transplant tolerance depend on BALT formation?

Bharat, A., May 1 2020, In : American Journal of Transplantation. 20, 5, p. 1219-1220 2 p.

Research output: Contribution to journalEditorial

Open Access

Failure to administer recommended chemotherapy: Acceptable variation or cancer care quality blind spot?

Ellis, R. J., Schlick, C. J. R., Feinglass, J., Mulcahy, M. F., Benson, A. B., Kircher, S. M., Yang, T. D., Odell, D. D., Bilimoria, K. & Merkow, R. P., Feb 1 2020, In : BMJ Quality and Safety. 29, 2, p. 103-112 10 p.

Research output: Contribution to journalArticle

1 Scopus citations

Gastrointestinal Bleeding After HeartMate II or HVAD Implantation: Incidence, Location, Etiology, and Effect on Survival

Kawabori, M., Kurihara, C., Critsinelis, A. C., Sugiura, T., Kaku, Y., Civitello, A. B., Rosengart, T. K. & Morgan, J. A., Mar 1 2020, In : ASAIO journal (American Society for Artificial Internal Organs : 1992). 66, 3, p. 283-290 8 p.

Research output: Contribution to journalArticle

1 Scopus citations

Margin Positivity in Resectable Esophageal Cancer: Are there Modifiable Risk Factors?

Schlick, C. J. R., Khorfan, R., Odell, D. D., Merkow, R. P. & Bentrem, D. J., May 1 2020, In : Annals of surgical oncology. 27, 5, p. 1496-1507 12 p.

Research output: Contribution to journalArticle

1 Scopus citations

Operationalizing mucosal biopsies using machine learning to determine lung allograft dysfunction

Bharat, A., Apr 1 2020, In : American Journal of Transplantation. 20, 4, p. 918-919 2 p.

Research output: Contribution to journalEditorial

Open Access

Outcomes associated with insertion of indwelling urinary catheters by medical students in the operating room following implementation of a simulation-based curriculum

Barnum, T., Tatebe, L. C., Halverson, A. L., Helenowski, I. B., Yang, A. D. & Odell, D. D., Jan 1 2020, (Accepted/In press) In : Academic Medicine. p. 435-441 7 p.

Research output: Contribution to journalArticle

1 Scopus citations

Post-operative complications and readmissions following outpatient elective Nissen fundoplication

Yuce, T. K., Ellis, R. J., Merkow, R. P., Soper, N. J., Bilimoria, K. Y. & Odell, D. D., May 1 2020, In : Surgical endoscopy. 34, 5, p. 2143-2148 6 p.

Research output: Contribution to journalArticle

Pre-Intubation Veno-Venous Extracorporeal Membrane Oxygenation in Patients at Risk for Respiratory Decompensation

Karim, A. S., Son, A. Y., Suen, R., Walter, J. M., Saine, M., Kim, S. S., Odell, D. D., Thakkar, S., Kurihara, C. & Bharat, A., Mar 1 2020, In : The journal of extra-corporeal technology. 52, 1, p. 52-57 6 p.

Research output: Contribution to journalArticle

Reply

Kawabori, M., Kurihara, C. & Morgan, J. A., Mar 2020, In : Annals of Thoracic Surgery. 109, 3, 1 p.

Research output: Contribution to journalLetter

Survival of Primary Stereotactic Body Radiation Therapy Compared With Surgery for Operable Stage I/II Non-small Cell Lung Cancer

Khorfan, R., Kruser, T. J., Coughlin, J. M., Bharat, A., Bilimoria, K. Y. & Odell, D. D., Jan 1 2020, (Accepted/In press) In : Annals of Thoracic Surgery.

Research output: Contribution to journalArticle

The author replies

Bharat, A., Jan 1 2020, (Accepted/In press) In : Critical care medicine. p. E1038-E1039

Research output: Contribution to journalLetter

Thoracoscopic lung biopsy under regional anesthesia for interstitial lung disease

Kurihara, C., Tolly, B., Dewolf, A., Nader, A., Kim, S., Odell, D. D., Argento, A. C., Scott Budinger, G. R. & Bharat, A., Apr 1 2020, In : Regional anesthesia and pain medicine. 45, 4, p. 255-259 5 p.

Research output: Contribution to journalArticle

Utilization of Minimally Invasive Surgery and Its Association with Chemotherapy for Locally Advanced Gastric Cancer

Khorfan, R., Schlick, C. J. R., Yang, A. D., Odell, D. D., Bentrem, D. J. & Merkow, R. P., Feb 1 2020, In : Journal of Gastrointestinal Surgery. 24, 2, p. 243-252 10 p.

Research output: Contribution to journalArticle

2019

A left ventricular end-diastolic dimension less than 6.0 cm is associated with mortality after implantation of an axial-flow pump

Kawabori, M., Kurihara, C., Conyer, R., Sugiura, T., Critsinelis, A. C., Lee, V. V., Civitello, A. B. & Morgan, J. A., Jun 1 2019, In : Journal of Thoracic and Cardiovascular Surgery. 157, 6, p. 2302-2310 9 p.

Research output: Contribution to journalArticle

2 Scopus citations

All work and no play: Addressing medical students’ concerns about duty hours on the surgical clerkship

Barnum, T. J., Halverson, A. L., Helenowski, I. & Odell, D. D., Aug 2019, In : American journal of surgery. 218, 2, p. 419-423 5 p.

Research output: Contribution to journalArticle

1 Scopus citations

A need for targeted immunosuppression after lung transplantation

Bharat, A., Jan 1 2019, In : American journal of respiratory cell and molecular biology. 61, 3, p. 279-280 2 p.

Research output: Contribution to journalEditorial

Open Access

Arachnoid web of the spine: A systematic literature review

Nisson, P. L., Hussain, I., Härtl, R., Kim, S. & Baaj, A. A., Jan 1 2019, In : Journal of Neurosurgery: Spine. 31, 2, p. 175-184 10 p.

Research output: Contribution to journalReview article

1 Scopus citations

Association Between Hospital Safety Culture and Surgical Outcomes in a Statewide Surgical Quality Improvement Collaborative

Odell, D. D., Quinn, C. M., Matulewicz, R. S., Johnson, J., Engelhardt, K. E., Stulberg, J. J., Yang, A. D., Holl, J. L. & Bilimoria, K. Y., Aug 1 2019, In : Journal of the American College of Surgeons. 229, 2, p. 175-183 9 p.

Research output: Contribution to journalArticle

2 Scopus citations

Bronchoendoscopic repair of tracheoesophageal fistula

Mozer, A. B., Michel, E., Gillespie, C. & Bharat, A., Sep 15 2019, In : American journal of respiratory and critical care medicine. 200, 6, p. 774-775 2 p.

Research output: Contribution to journalShort survey

Bronchus-associated lymphoid tissue–resident Foxp3 + T lymphocytes prevent antibody-mediated lung rejection

Li, W., Gauthier, J. M., Higashikubo, R., Hsiao, H. M., Tanaka, S., Vuong, L., Ritter, J. H., Tong, A. Y., Wong, B. W., Hachem, R. R., Puri, V., Bharat, A., Krupnick, A. S., Hsieh, C. S., Baldwin, W. M., Kelly, F. L., Palmer, S. M., Gelman, A. E. & Kreisel, D., Feb 1 2019, In : Journal of Clinical Investigation. 129, 2, p. 556-568 13 p.

Research output: Contribution to journalArticle

12 Scopus citations

Clinical relevance of lung-restricted antibodies in lung transplantation

Akbarpour, M., Wu, Q., Liu, X., Sun, H., Lecuona, E., Tomic, R., Bhorade, S., Mohanakumar, T. & Bharat, A., Aug 2019, In : Human Immunology. 80, 8, p. 595-601 7 p.

Research output: Contribution to journalReview article

1 Scopus citations

Concomitant valve procedures in patients undergoing continuous-flow left ventricular assist device implantation: A single-center experience

Sugiura, T., Kurihara, C., Kawabori, M., Critsinelis, A. C., Wang, S., Civitello, A. B., Rosengart, T. K., Frazier, O. H. & Morgan, J. A., Oct 2019, In : Journal of Thoracic and Cardiovascular Surgery. 158, 4, p. 1083-1089.e1

Research output: Contribution to journalArticle

Open Access
5 Scopus citations

Conducting high-quality research in cardiothoracic surgical education: Recommendations from the Thoracic Education Cooperative Group

Antonoff, M. B., Nguyen, S., Nguyen, T. C. & Odell, D. D., Feb 2019, In : Journal of Thoracic and Cardiovascular Surgery. 157, 2, p. 820-827.e1

Research output: Contribution to journalArticle

5 Scopus citations

Device exchange from Heartmate II to HeartWare HVAD

Beaupre, R. A., Alnajar, A., Sugiura, T., Chou, B., Lamba, H. K., Kurihara, C., Kawabori, M., Critsinelis, A. C., Santiago, A. & Morgan, J. A., Nov 1 2019, In : Journal of Cardiac Surgery. 34, 11, p. 1204-1207 4 p.

Research output: Contribution to journalArticle

Effect of concomitant mitral valve procedures for severe mitral regurgitation during left ventricular assist device implantation

Kawabori, M., Kurihara, C., Conyer, R. T., Critsinelis, A. C., Sugiura, T., Rosengart, T. & Morgan, J. A., Jun 14 2019, In : Journal of Artificial Organs. 22, 2, p. 91-97 7 p.

Research output: Contribution to journalArticle

4 Scopus citations

Elevated CO2 regulates the Wnt signaling pathway in mammals, Drosophila melanogaster and Caenorhabditis elegans

Shigemura, M., Lecuona, E., Angulo, M., Dada, L. A., Edwards, M. B., Welch, L. C., Casalino-Matsuda, S. M., Sporn, P. H. S., Vadász, I., Helenius, I. T., Nader, G. A., Gruenbaum, Y., Sharabi, K., Cummins, E., Taylor, C., Bharat, A., Gottardi, C. J., Beitel, G. J., Kaminski, N., Budinger, G. R. S. & 2 others, Berdnikovs, S. & Sznajder, J. I., Dec 1 2019, In : Scientific reports. 9, 1, 18251.

Research output: Contribution to journalArticle

Open Access

Erratum: Metformin Targets Mitochondrial Electron Transport to Reduce Air-Pollution-Induced Thrombosis (Cell Metabolism (2019) 29(2) (335–347.e5), (S1550413118305862) (10.1016/j.cmet.2018.09.019))

Soberanes, S., Misharin, A. V., Jairaman, A., Morales-Nebreda, L., McQuattie-Pimentel, A. C., Cho, T., Hamanaka, R. B., Meliton, A. Y., Reyfman, P. A., Walter, J. M., Chen, C. I., Chi, M., Chiu, S., Gonzalez-Gonzalez, F. J., Antalek, M., Abdala-Valencia, H., Chiarella, S. E., Sun, K. A., Woods, P. S., Ghio, A. J. & 12 others, Jain, M., Perlman, H., Ridge, K. M., Morimoto, R. I., Sznajder, J. I., Balch, W. E., Bhorade, S. M., Bharat, A., Prakriya, M., Chandel, N. S., Mutlu, G. M. & Budinger, G. R. S., Feb 5 2019, In : Cell Metabolism. 29, 2, 1 p.

Research output: Contribution to journalComment/debate

2 Scopus citations

Evaluation of adherence to the Commission on Cancer lung cancer quality measures

Odell, D. D., Feinglass, J., Engelhardt, K., Papastefan, S., Meyerson, S. L., Bharat, A., DeCamp, M. M. & Bilimoria, K. Y., Mar 2019, In : Journal of Thoracic and Cardiovascular Surgery. 157, 3, p. 1219-1235 17 p.

Research output: Contribution to journalArticle

5 Scopus citations

Expanding the Lung Donor Pool and Improving Outcomes: Ex Vivo Lung Perfusion

Chiu, S., Mills, S. E. A. & Bharat, A., Dec 2019, In : JAMA surgery. 154, 12, 1 p.

Research output: Contribution to journalComment/debate

Fatal Neurologic Dysfunction During Continuous-Flow Left Ventricular Assist Device Support

Kawabori, M., Conyer, R. T., Kurihara, C., Sugiura, T., Civitello, A. B., Frazier, O. H. & Morgan, J. A., Apr 2019, In : Annals of Thoracic Surgery. 107, 4, p. 1132-1138 7 p.

Research output: Contribution to journalArticle

3 Scopus citations

Gut microbiota can impact chronic murine lung allograft rejection

Wu, Q., Turturice, B., Wagner, S., Huang, Y., Gupta, P. K., Schott, C., Metwally, A., Ranjan, R., Perkins, D., Alegre, M. L., Finn, P., Scott Budinger, G. R., Shilling, R. & Bharat, A., Jan 2019, In : American journal of respiratory cell and molecular biology. 60, 1, p. 131-134 4 p.

Research output: Contribution to journalLetter

3 Scopus citations

Hidden treasures in contemporary RNA sequencing

Mangul, S., Yang, H. T., Eskin, E. & Zaitlen, N., Jan 1 2019, SpringerBriefs in Computer Science. Springer, p. 1-93 93 p. (SpringerBriefs in Computer Science).

Research output: Chapter in Book/Report/Conference proceedingChapter

How bioinformatics and open data can boost basic science in countries and universities with limited resources

Mangul, S., Martin, L. S., Langmead, B., Sanchez-Galan, J. E., Toma, I., Hormozdiari, F., Pevzner, P. & Eskin, E., Mar 1 2019, In : Nature biotechnology. 37, 3, p. 324-326 3 p.

Research output: Contribution to journalArticle

3 Scopus citations

How Many Observations are Needed to Assess a Surgical Trainee's State of Operative Competency?

Williams, R. G., Swanson, D. B., Fryer, J. P., Meyerson, S. L., Bohnen, J. D., Dunnington, G. L., Scully, R. E., Schuller, M. C. & George, B. C., Feb 1 2019, In : Annals of surgery. 269, 2, p. 377-382 6 p.

Research output: Contribution to journalArticle

13 Scopus citations

Identifying and Addressing High Priority Issues in General Surgery Training and Education

Fryer, J. P., Schuller, M., Wnuk, G., Meyerson, S. L., Zwischenberger, J., Meier, A., Williams, R. & George, B., Jan 1 2019, In : Journal of Surgical Education. 76, 1, p. 50-54 5 p.

Research output: Contribution to journalArticle

Improving the usability and archival stability of bioinformatics software

Mangul, S., Martin, L. S., Eskin, E. & Blekhman, R., Feb 27 2019, In : Genome biology. 20, 1, 47.

Research output: Contribution to journalReview article

Open Access
10 Scopus citations

Is There a Role for Cancer-Directed Surgery in Early-Stage Sarcomatoid or Biphasic Mesothelioma?

Kim, S. S., Bull, D. A., Garland, L., Khalpey, Z., Stea, B., Yi, S. & Hsu, C. C., Jan 2019, In : Annals of Thoracic Surgery. 107, 1, p. 194-201 8 p.

Research output: Contribution to journalArticle

3 Scopus citations

Long-Term Continuous-Flow Left Ventricular Assist Device Support After Left Ventricular Outflow Tract Closure

Kurihara, C., Cohn, W. E., Kawabori, M., Sugiura, T., Civitello, A. B. & Morgan, J. A., Aug 1 2019, In : ASAIO Journal. 65, 6, p. 558-564 7 p.

Research output: Contribution to journalArticle

1 Scopus citations

Long-Term Impact of Cytomegalovirus Serologic Status on Lung Transplantation in the United States

Kurihara, C., Fernandez, R., Safaeinili, N., Akbarpour, M., Wu, Q., Budinger, G. R. S. & Bharat, A., Apr 2019, In : Annals of Thoracic Surgery. 107, 4, p. 1046-1052 7 p.

Research output: Contribution to journalArticle

2 Scopus citations
1 Scopus citations

Measuring the quality of multi-disciplinary thoracic oncology care

Wakeam, E., Odell, D. & Samson, P., Jan 1 2019, In : Journal of Thoracic Disease. 11, p. S562-S565

Research output: Contribution to journalReview article

1 Scopus citations

MiCoP: Microbial community profiling method for detecting viral and fungal organisms in metagenomic samples

Lapierre, N., Mangul, S., Alser, M., Mandric, I., Wu, N. C., Koslicki, D. & Eskin, E., Jun 6 2019, In : BMC Genomics. 20, 423.

Research output: Contribution to journalArticle

Open Access

Multidimensional assessment of the host response in mechanically ventilated patients with suspected pneumonia

Walter, J. M., Ren, Z., Yacoub, T., Reyfman, P. A., Shah, R. D., Abdala-Valencia, H., Nam, K., Morgan, V. K., Anekalla, K. R., Joshi, N., McQuattie-Pimentel, A. C., Chen, C. I., Chi, M., Han, S. H., Gonzalez-Gonzalez, F. J., Soberanes, S., Aillon, R. P., Watanabe, S., Williams, K. J. N., Lu, Z. & 13 others, Paonessa, J., Hountras, P., Breganio, M., Borkowski, N., Donnelly, H. K., Allen, J. P., Amaral, L. A., Bharat, A., Misharin, A. V., Bagheri, N., Hauser, A. R., Budinger, G. R. S. & Wunderink, R. G., May 15 2019, In : American journal of respiratory and critical care medicine. 199, 10, p. 1225-1237 13 p.

Research output: Contribution to journalArticle

6 Scopus citations

Non-small cell lung cancer, version 1.2020: Featured updates to the NCCN guidelines

Ettinger, D. S., Wood, D. E., Aggarwal, C., Aisner, D. L., Akerley, W., Bauman, J. R., Bharat, A., Bruno, D. S., Chang, J. Y., Chirieac, L. R., D'Amico, T. A., Dilling, T. J., Dobelbower, M., Gettinger, S., Govindan, R., Gubens, M. A., Hennon, M., Horn, L., Lackner, R. P., Lanuti, M. & 16 others, Leal, T. A., Lin, J., Loo, B. W., Martins, R. G., Otterson, G. A., Patel, S. P., Reckamp, K. L., Riely, G. J., Schild, S. E., Shapiro, T. A., Stevenson, J., Swanson, S. J., Tauer, K. W., Yang, S. C., Gregory, K. & Hughes, M., Jan 1 2019, In : JNCCN Journal of the National Comprehensive Cancer Network. 17, 12, p. 1464-1472 9 p.

Research output: Contribution to journalArticle

Open Access
10 Scopus citations

Optimal surgical intervention for achalasia: laparoscopic or robotic approach

Kim, S. S., Guillen-Rodriguez, J. & Little, A. G., Jun 1 2019, In : Journal of Robotic Surgery. 13, 3, p. 397-400 4 p.

Research output: Contribution to journalArticle

3 Scopus citations

Optimizing health before elective thoracic surgery: Systematic review of modifiable risk factors and opportunities for health services research

Stokes, S. M., Wakeam, E., Antonoff, M. B., Backhus, L. M., Meguid, R. A., Odell, D. D. & Varghese, T. K., Jan 1 2019, In : Journal of Thoracic Disease. 11, p. S537-S554

Research output: Contribution to journalReview article

5 Scopus citations