Surgery, Thoracic Surgery Division

Research Output 1967 2019

2019
2 Citations (Scopus)

A left ventricular end-diastolic dimension less than 6.0 cm is associated with mortality after implantation of an axial-flow pump

Kawabori, M., Kurihara, C., Conyer, R., Sugiura, T., Critsinelis, A. C., Lee, V. V., Civitello, A. B. & Morgan, J. A., Jun 1 2019, In : Journal of Thoracic and Cardiovascular Surgery. 157, 6, p. 2302-2310 9 p.

Research output: Contribution to journalArticle

Survival
Mortality
Stroke
Equipment Design
Heart-Assist Devices

All work and no play: Addressing medical students’ concerns about duty hours on the surgical clerkship

Barnum, T. J., Halverson, A. L., Helenowski, I. & Odell, D. D., Aug 1 2019, In : American journal of surgery. 218, 2, p. 419-423 5 p.

Research output: Contribution to journalArticle

Medical Students
Students
Internal Medicine
Workload
Logistic Models

A need for targeted immunosuppression after lung transplantation

Bharat, A., Jan 1 2019, In : American journal of respiratory cell and molecular biology. 61, 3, p. 279-280 2 p.

Research output: Contribution to journalEditorial

Open Access
Lung Transplantation
Immunosuppression

Bronchoendoscopic repair of tracheoesophageal fistula

Mozer, A. B., Michel, E., Gillespie, C. T. & Bharat, A., Sep 15 2019, In : American journal of respiratory and critical care medicine. 200, 6, p. 774-775 2 p.

Research output: Contribution to journalShort survey

Tracheoesophageal Fistula
7 Citations (Scopus)

Bronchus-associated lymphoid tissue–resident Foxp3 + T lymphocytes prevent antibody-mediated lung rejection

Li, W., Gauthier, J. M., Higashikubo, R., Hsiao, H. M., Tanaka, S., Vuong, L., Ritter, J. H., Tong, A. Y., Wong, B. W., Hachem, R. R., Puri, V., Bharat, A., Krupnick, A. S., Hsieh, C. S., Baldwin, W. M., Kelly, F. L., Palmer, S. M., Gelman, A. E. & Kreisel, D., Feb 1 2019, In : Journal of Clinical Investigation. 129, 2, p. 556-568 13 p.

Research output: Contribution to journalArticle

Bronchi
T-Lymphocytes
Lung
Antibodies
Transplants
1 Citation (Scopus)

Clinical relevance of lung-restricted antibodies in lung transplantation

Akbarpour, M., Wu, Q., Liu, X., Sun, H., Lecuona, E., Tomic, R., Bhorade, S. M., Mohanakumar, T. & Bharat, A., Jan 1 2019, In : Human Immunology.

Research output: Contribution to journalReview article

Lung Transplantation
Lung
Antibodies
Allografts
HLA Antigens
3 Citations (Scopus)

Concomitant valve procedures in patients undergoing continuous-flow left ventricular assist device implantation: A single-center experience

Sugiura, T., Kurihara, C., Kawabori, M., Critsinelis, A. C., Wang, S., Civitello, A. B., Rosengart, T. K., Frazier, O. H. & Morgan, J. A., Oct 1 2019, In : Journal of Thoracic and Cardiovascular Surgery. 158, 4, p. 1083-1089.e1

Research output: Contribution to journalArticle

Open Access
Heart-Assist Devices
Survival Rate
Tricuspid Valve
Mortality
Disease Management
4 Citations (Scopus)

Conducting high-quality research in cardiothoracic surgical education: Recommendations from the Thoracic Education Cooperative Group

Antonoff, M. B., Nguyen, S., Nguyen, T. C. & Odell, D. D., Feb 1 2019, In : Journal of Thoracic and Cardiovascular Surgery. 157, 2, p. 820-827.e1

Research output: Contribution to journalArticle

Thorax
Education
Research
Ethics
Sample Size

Device exchange from Heartmate II to HeartWare HVAD

Beaupre, R. A., Alnajar, A., Sugiura, T., Chou, B., Lamba, H. K., Kurihara, C., Kawabori, M., Critsinelis, A. C., Santiago, A. & Morgan, J. A., Nov 1 2019, In : Journal of Cardiac Surgery. 34, 11, p. 1204-1207 4 p.

Research output: Contribution to journalArticle

Equipment and Supplies
Heart-Assist Devices
Lost to Follow-Up
Sepsis
Heart Failure

Effect of concomitant mitral valve procedures for severe mitral regurgitation during left ventricular assist device implantation

Kawabori, M., Kurihara, C., Conyer, R. T., Critsinelis, A. C., Sugiura, T., Rosengart, T. & Morgan, J. A., Jun 14 2019, In : Journal of Artificial Organs. 22, 2, p. 91-97 7 p.

Research output: Contribution to journalArticle

Left ventricular assist devices
Heart-Assist Devices
Mitral Valve Insufficiency
Mitral Valve
Echocardiography

Erratum: Metformin Targets Mitochondrial Electron Transport to Reduce Air-Pollution-Induced Thrombosis (Cell Metabolism (2019) 29(2) (335–347.e5), (S1550413118305862) (10.1016/j.cmet.2018.09.019))

Soberanes, S., Misharin, A. V., Jairaman, A., Morales-Nebreda, L., McQuattie-Pimentel, A. C., Cho, T., Hamanaka, R. B., Meliton, A. Y., Reyfman, P. A., Walter, J. M., Chen, C. I., Chi, M., Chiu, S., Gonzalez-Gonzalez, F. J., Antalek, M., Abdala-Valencia, H., Chiarella, S. E., Sun, K. A., Woods, P. S., Ghio, A. J. & 12 others, Jain, M., Perlman, H., Ridge, K. M., Morimoto, R. I., Sznajder, J. I., Balch, W. E., Bhorade, S. M., Bharat, A., Prakriya, M., Chandel, N. S., Mutlu, G. M. & Budinger, G. R. S., Feb 5 2019, In : Cell Metabolism. 29, 2, 1 p.

Research output: Contribution to journalComment/debate

Metformin
Air Pollution
Electron Transport
Names
Publications
4 Citations (Scopus)

Evaluation of adherence to the Commission on Cancer lung cancer quality measures

Odell, D. D., Feinglass, J. M., Engelhardt, K., Papastefan, S., Meyerson, S. L., Bharat, A., DeCamp, M. M. & Bilimoria, K. Y., Mar 1 2019, In : Journal of Thoracic and Cardiovascular Surgery. 157, 3, p. 1219-1235 17 p.

Research output: Contribution to journalArticle

Lung Neoplasms
Adjuvant Chemotherapy
Drug Therapy
Ambulatory Surgical Procedures
Non-Small Cell Lung Carcinoma

Expanding the Lung Donor Pool and Improving Outcomes: Ex Vivo Lung Perfusion

Chiu, S., Mills, S. E. A. & Bharat, A., Jan 1 2019, (Accepted/In press) In : JAMA surgery. p. E1

Research output: Contribution to journalComment/debate

Perfusion
Lung
1 Citation (Scopus)
Quality of Health Care
Optic Disk
Drug Therapy
Neoplasms
Lung Neoplasms

Fatal Neurologic Dysfunction During Continuous-Flow Left Ventricular Assist Device Support

Kawabori, M., Conyer, R. T., Kurihara, C., Sugiura, T., Civitello, A. B., Frazier, O. H. & Morgan, J. A., Apr 1 2019, In : Annals of Thoracic Surgery. 107, 4, p. 1132-1138 7 p.

Research output: Contribution to journalArticle

Heart-Assist Devices
Neurologic Manifestations
Mortality
Regression Analysis
2 Citations (Scopus)

Gut microbiota can impact chronic murine lung allograft rejection

Wu, Q., Turturice, B., Wagner, S., Huang, Y., Gupta, P. K., Schott, C., Metwally, A., Ranjan, R., Perkins, D., Alegre, M. L., Finn, P., Scott Budinger, G. R., Shilling, R. & Bharat, A., Jan 2019, In : American journal of respiratory cell and molecular biology. 60, 1, p. 131-134 4 p.

Research output: Contribution to journalLetter

Allografts
Lung
Gastrointestinal Microbiome
Lung
Direction compound
Pulmonary Vein Stenosis

Hidden treasures in contemporary RNA sequencing

Mangul, S., Yang, H. T., Eskin, E. & Zaitlen, N., Jan 1 2019, SpringerBriefs in Computer Science. Springer, p. 1-93 93 p. (SpringerBriefs in Computer Science).

Research output: Chapter in Book/Report/Conference proceedingChapter

RNA
Cells
Tissue
Immune system
Gene expression
1 Citation (Scopus)

How bioinformatics and open data can boost basic science in countries and universities with limited resources

Mangul, S., Martin, L. S., Langmead, B., Sanchez-Galan, J. E., Toma, I., Hormozdiari, F., Pevzner, P. & Eskin, E., Mar 1 2019, In : Nature biotechnology. 37, 3, p. 324-326 3 p.

Research output: Contribution to journalArticle

Scanning Transmission Electron Microscopy
Bioinformatics
Computational Biology
Hardware
Research
8 Citations (Scopus)

How Many Observations are Needed to Assess a Surgical Trainee's State of Operative Competency?

Williams, R. G., Swanson, D. B., Fryer, J. P., Meyerson, S. L., Bohnen, J. D., Dunnington, G. L., Scully, R. E., Schuller, M. C. & George, B. C., Feb 1 2019, In : Annals of surgery. 269, 2, p. 377-382 6 p.

Research output: Contribution to journalArticle

Laparoscopic Cholecystectomy
Diagnosis-Related Groups
Operative Surgical Procedures
Certification
Analysis of Variance

Identifying and Addressing High Priority Issues in General Surgery Training and Education

Fryer, J. P., Schuller, M., Wnuk, G., Meyerson, S. L., Zwischenberger, J., Meier, A., Williams, R. & George, B., Jan 1 2019, In : Journal of Surgical Education. 76, 1, p. 50-54 5 p.

Research output: Contribution to journalArticle

Internship and Residency
surgery
Learning
Safety
Education
2 Citations (Scopus)

Improving the usability and archival stability of bioinformatics software

Mangul, S., Martin, L. S., Eskin, E. & Blekhman, R., Feb 27 2019, In : Genome biology. 20, 1, 47.

Research output: Contribution to journalReview article

Open Access
bioinformatics
Computational Biology
Software
software
Publications

Long-Term Continuous-Flow Left Ventricular Assist Device Support After Left Ventricular Outflow Tract Closure

Kurihara, C., Cohn, W. E., Kawabori, M., Sugiura, T., Civitello, A. B. & Morgan, J. A., Aug 1 2019, In : ASAIO Journal. 65, 6, p. 558-564 7 p.

Research output: Contribution to journalArticle

Left ventricular assist devices
Heart-Assist Devices
Neurologic Manifestations
Aortic Valve Insufficiency
Aortic Valve
1 Citation (Scopus)

Long-Term Impact of Cytomegalovirus Serologic Status on Lung Transplantation in the United States

Kurihara, C., Fernandez, R., Safaeinili, N., Akbarpour, M., Wu, Q., Budinger, GR. S. & Bharat, A., Apr 1 2019, In : Annals of Thoracic Surgery. 107, 4, p. 1046-1052 7 p.

Research output: Contribution to journalArticle

Lung Transplantation
Cytomegalovirus
Tissue Donors
Mortality
Bronchiolitis Obliterans
Extracorporeal Membrane Oxygenation
Oxygenation
Biopsy
Adult Respiratory Distress Syndrome
varespladib methyl
1 Citation (Scopus)

Measuring the quality of multi-disciplinary thoracic oncology care

Wakeam, E., Odell, D. & Samson, P., Jan 1 2019, In : Journal of Thoracic Disease. 11, p. S562-S565

Research output: Contribution to journalReview article

Thorax
Quality of Health Care

MiCoP: Microbial community profiling method for detecting viral and fungal organisms in metagenomic samples

Lapierre, N., Mangul, S., Alser, M., Mandric, I., Wu, N. C., Koslicki, D. & Eskin, E., Jun 6 2019, In : BMC Genomics. 20, 423.

Research output: Contribution to journalArticle

Open Access
Metagenomics
Microbiota
Eukaryota
Viruses
Databases
3 Citations (Scopus)

Multidimensional assessment of the host response in mechanically ventilated patients with suspected pneumonia

Walter, J. M., Ren, Z., Yacoub, T., Reyfman, P. A., Shah, R. D., Abdala-Valencia, H., Nam, K., Morgan, V. K., Anekalla, K. R., Joshi, N., McQuattie-Pimentel, A. C., Chen, C. I., Chi, M., Han, S., Gonzalez-Gonzalez, F. J., Soberanes, S., Aillon, R. P., Watanabe, S., Williams, K. J. N., Lu, Z. & 13 others, Paonessa, J., Hountras, P., Breganio, M., Borkowski, N., Donnelly, H. K., Allen, J. P., Amaral, L. A. N., Bharat, A., Misharin, A., Bagheri, N., Hauser, A. R., Budinger, GR. S. & Wunderink, R. G., May 15 2019, In : American journal of respiratory and critical care medicine. 199, 10, p. 1225-1237 13 p.

Research output: Contribution to journalArticle

Bacterial Pneumonia
Pneumonia
Macrophages
Bronchoalveolar Lavage Fluid
Alveolar Macrophages
1 Citation (Scopus)

Optimal surgical intervention for achalasia: laparoscopic or robotic approach

Kim, S. S., Guillen-Rodriguez, J. & Little, A. G., Jun 1 2019, In : Journal of Robotic Surgery. 13, 3, p. 397-400 4 p.

Research output: Contribution to journalArticle

Esophageal Achalasia
Robotics
Stomach
Demography
Operative Time
1 Citation (Scopus)

Optimizing health before elective thoracic surgery: Systematic review of modifiable risk factors and opportunities for health services research

Stokes, S. M., Wakeam, E., Antonoff, M. B., Backhus, L. M., Meguid, R. A., Odell, D. D. & Varghese, T. K., Jan 1 2019, In : Journal of Thoracic Disease. 11, p. S537-S554

Research output: Contribution to journalReview article

Health Services Research
Thoracic Surgery
Hope
Health
Thorax
Fundoplication
Outpatients
Ambulatory Surgical Procedures
Inpatients
Morbidity

Severe LVAD-related infections requiring surgical treatment: Incidence, predictors, effect on survival, and impact of device selection

Olmsted, R. Z., Critsinelis, A., Kurihara, C., Kawabori, M., Sugiura, T., Civitello, A. B. & Morgan, J. A., Feb 1 2019, In : Journal of Cardiac Surgery. 34, 2, p. 82-91 10 p.

Research output: Contribution to journalArticle

Heart-Assist Devices
Equipment and Supplies
Survival
Incidence
Infection
22 Citations (Scopus)

Single-cell transcriptomic analysis of human lung provides insights into the pathobiology of pulmonary fibrosis

Reyfman, P. A., Walter, J. M., Joshi, N., Anekalla, K. R., McQuattie-Pimentel, A. C., Chiu, S., Fernandez, R., Akbarpour, M., Chen, C. I., Ren, Z., Verma, R., Abdala-Valencia, H., Nam, K., Chi, M., Han, S. H., Gonzalez-Gonzalez, F. J., Soberanes, S., Watanabe, S., Williams, K. J. N., Flozak, A. S. & 29 others, Nicholson, T. T., Morgan, V. K., Winter, D. R., Hinchcliff, M., Hrusch, C. L., Guzy, R. D., Bonham, C. A., Sperling, A. I., Bag, R., Hamanaka, R. B., Mutlu, G. M., Yeldandi, A. V., Marshall, S. A., Shilatifard, A., Amaral, L. A. N., Perlman, H. R., Sznajder, J. I., Christine Argento, A., Gillespie, C. T., Dematte, J., Jain, M., Singer, B., Ridge, K. M., Lam, A. P., Bharat, A., Bhorade, S. M., Gottardi, C., Budinger, GR. S. & Misharin, A., Jun 15 2019, In : American Journal of Respiratory and Critical Care Medicine. 199, 12, p. 1517-1536 20 p.

Research output: Contribution to journalArticle

Open Access
Single-Cell Analysis
Pulmonary Fibrosis
Lung
RNA Sequence Analysis
Alveolar Macrophages
2 Citations (Scopus)

Survival after adjuvant radiation therapy in localized small cell lung cancer treated with complete resection

Engelhardt, K. E., Coughlin, J. M., DeCamp, M. M., Denlinger, C. E., Meyerson, S. L., Bharat, A. & Odell, D. D., Dec 2019, In : Journal of Thoracic and Cardiovascular Surgery. 158, 6, p. 1665-1677.e2

Research output: Contribution to journalArticle

Small Cell Lung Carcinoma
Radiotherapy
Survival
Thorax
Confidence Intervals
3 Citations (Scopus)

Systematic benchmarking of omics computational tools

Mangul, S., Martin, L. S., Hill, B. L., Lam, A. K. M., Distler, M. G., Zelikovsky, A., Eskin, E. & Flint, J., Dec 1 2019, In : Nature communications. 10, 1, 1393.

Research output: Contribution to journalReview article

Open Access
Benchmarking
biology
biomedical data
software development tools
computer programs

The effect of gender on operative autonomy in general surgery residents

Procedural Learning and Safety Collaborative, Jan 1 2019, In : Surgery (United States).

Research output: Contribution to journalArticle

Education
Sex Characteristics
Logistic Models
Regression Analysis
Smartphone
1 Citation (Scopus)

The role of donor-derived exosomes in lung allograft rejection

Ravichandran, R., Bansal, S., Rahman, M., Sharma, M., Liu, W., Bharat, A., Hachem, R., Omar, A., Smith, M. A. & Mohanakumar, T., Jan 1 2019, In : Human Immunology.

Research output: Contribution to journalReview article

Exosomes
Allografts
Tissue Donors
Lung
Autoantigens
1 Citation (Scopus)

Use of ProtekDuo as Veno-arterial and Veno-venous Extracorporeal Membrane Oxygenation During Bilateral Lung Transplantation

Budd, A. N., Kozarek, K., Kurihara, C., Bharat, A., Reynolds, A. S. & Kretzer, A. B., Aug 1 2019, In : Journal of Cardiothoracic and Vascular Anesthesia. 33, 8, p. 2250-2254 5 p.

Research output: Contribution to journalArticle

Right Ventricular Dysfunction
Extracorporeal Membrane Oxygenation
Lung Transplantation
2018
3 Citations (Scopus)

A beginner’s guide to analysis of RNA sequencing data

Koch, C. M., Chiu, S. F., Akbarpour, M., Bharat, A., Ridge, K. M., Bartom, E. T. & Winter, D. R., Aug 1 2018, In : American journal of respiratory cell and molecular biology. 59, 2, p. 145-157 13 p.

Research output: Contribution to journalReview article

RNA Sequence Analysis
RNA
Publications
Research Personnel
Bioinformatics
7 Citations (Scopus)

A Comprehensive Map of Genetic Variation in the World's Largest Ethnic Group-Han Chinese

Chiang, C. W. K., Mangul, S., Robles, C. & Sankararaman, S., Nov 1 2018, In : Molecular biology and evolution. 35, 11, p. 2736-2750 15 p.

Research output: Contribution to journalArticle

ethnic group
nationalities and ethnic groups
Ethnic Groups
genetic variation
China
2 Citations (Scopus)

Acute kidney injury after implantation of a left ventricular assist device: a comparison of axial-flow (HeartMate II) and centrifugal-flow (HeartWare HVAD) devices

Anjum, A., Kurihara, C., Critsinelis, A., Kawabori, M., Sugiura, T., Civitello, A. B., Etheridge, W. B., Delgado, R. M., Simpson, L., George, J. K., Nair, A. P., Frazier, O. H. & Morgan, J. A., Sep 1 2018, In : Journal of Artificial Organs. 21, 3, p. 285-292 8 p.

Research output: Contribution to journalArticle

Left ventricular assist devices
Heart-Assist Devices
Axial flow
Acute Kidney Injury
Equipment and Supplies
2 Citations (Scopus)

A novel strategy for cardiopulmonary support during lung transplantation

Fernandez, R., DeCamp, M. M. & Bharat, A., Feb 1 2018, In : Journal of Thoracic Disease. 10, 2, p. E142-E144

Research output: Contribution to journalArticle

Lung Transplantation
Heart Ventricles
Cardiopulmonary Bypass
Extracorporeal Membrane Oxygenation
Disease Susceptibility
6 Citations (Scopus)
Lung Transplantation
Body Mass Index
Lung
Survival
Mortality
5 Citations (Scopus)

Association of cardiomyopathy with MYBPC3 D389V and MYBPC3 Δ25bp intronic deletion in south asian descendants

Viswanathan, S. K., Roy-Puckelwartz, M. J., Mehta, A., Ramachandra, C. J. A., Jagadeesan, A., Fritsche-Danielson, R., Bhat, R. V., Wong, P., Kandoi, S., Schwanekamp, J. A., Kuffel, G., Pesce, L. L., Zilliox, M. J., Durai, U. N. B., Verma, R. S., Molokie, R. E., Suresh, D. P., Khoury, P. R., Thomas, A., Sanagala, T. & 6 others, Tang, H. C., Becker, R. C., Knoll, R., Shim, W., McNally, E. M. & Sadayappan, S., Jun 1 2018, In : JAMA cardiology. 3, 6, p. 481-488 8 p.

Research output: Contribution to journalArticle

Cardiomyopathies
Cardiac Myocytes
Genotype
Phenotype
Induced Pluripotent Stem Cells

A young man with progressive esophageal neoplasms

Shen, Y., Shen, J., Phan, K., Tian, D., D'Amico, T. A., Berry, M. F., Blackmon, S. H., Meyerson, S. L., D'Journo, X. B., Chen, Y. J., Baron, G., Hou, Y. & Tan, L., Nov 1 2018, In : Journal of Thoracic Disease. 10, 11, p. 5985-5990 6 p.

Research output: Contribution to journalArticle

Esophageal Neoplasms
6 Citations (Scopus)

Bridging to a Long-Term Ventricular Assist Device With Short-Term Mechanical Circulatory Support

Kurihara, C., Kawabori, M., Sugiura, T., Critsinelis, A. C., Wang, S., Cohn, W. E., Civitello, A. B., Frazier, O. H. & Morgan, J. A., Jun 1 2018, In : Artificial organs. 42, 6, p. 589-596 8 p.

Research output: Contribution to journalArticle

Left ventricular assist devices
Heart-Assist Devices
Oxygenation
Membranes
Balloons
1 Citation (Scopus)
Extracorporeal Membrane Oxygenation
Adult Respiratory Distress Syndrome
Intravenous Administration
Severe Acute Respiratory Syndrome
Water-Electrolyte Balance

Comparing apples to oranges: Short-term mortality after surgery versus stereotactic body radiotherapy for early-stage non-small cell lung cancer

Engelhardt, K. E., Odell, D. D. & DeCamp Jr, M. M., Jun 1 2018, In : Journal of Thoracic Disease. 10, p. S1974-S1976

Research output: Contribution to journalEditorial

Radiosurgery
Malus
Non-Small Cell Lung Carcinoma
Mortality
2 Citations (Scopus)

Continuous-Flow Left Ventricular Assist Device Implantation in Patients With a Small Left Ventricle

Kawabori, M., Kurihara, C., Sugiura, T., Cohn, W. E., Civitello, A. B., Frazier, O. H. & Morgan, J. A., Mar 1 2018, In : Annals of Thoracic Surgery. 105, 3, p. 799-806 8 p.

Research output: Contribution to journalArticle

Open Access
Heart-Assist Devices
Heart Ventricles
Survival
Survival Rate
Equipment and Supplies
1 Citation (Scopus)

Convergent downstream candidate mechanisms of independent intergenic polymorphisms between co-classified diseases implicate epistasis among noncoding elements

Han, J., Li, J., Achour, I., Pesce, L., Foster, I., Li, H. & Lussier, Y. A., Jan 1 2018, In : Pacific Symposium on Biocomputing. 0, 212669, p. 524-535 12 p.

Research output: Contribution to journalConference article

Polymorphism
Single Nucleotide Polymorphism
Messenger RNA
Odds Ratio
Proteins