Surgery, Thoracic Surgery Division

Research Output 1967 2019

2017
512 Citations (Scopus)

Genetic effects on gene expression across human tissues

GTEx Consortium, Oct 11 2017, In : Nature. 550, 7675, p. 204-213 10 p.

Research output: Contribution to journalArticle

Gene Expression
Inborn Genetic Diseases
Genes
Organ Specificity
Medical Genetics
3 Citations (Scopus)

HapIso: An Accurate Method for the Haplotype-Specific Isoforms Reconstruction From Long Single-Molecule Reads

Mangul, S., Yang, T., Hormozdiari, F., Dainis, A. M., Tseng, E., Ashley, E. A., Zelikovsky, A. & Eskin, E., Mar 1 2017, In : IEEE Transactions on Nanobioscience. 16, 2, p. 108-115 8 p., 7880587.

Research output: Contribution to journalArticle

Open Access
Haplotypes
Protein Isoforms
Molecules
Alleles
RNA
4 Citations (Scopus)

Hyperglycemia attenuates receptor activator of NF-κB ligand–induced macrophage activation by suppressing insulin signaling

Kurihara, C., Tanaka, T. & Yamanouchi, D., Jun 15 2017, In : Journal of Surgical Research. 214, p. 168-175 8 p.

Research output: Contribution to journalArticle

Macrophage Activation
Hyperglycemia
Insulin
Glucose
Macrophages
5 Citations (Scopus)

Identifying the ubiquitination targets of E6AP by orthogonal ubiquitin transfer

Wang, Y., Liu, X., Zhou, L., Duong, D., Bhuripanyo, K., Zhao, B., Zhou, H., Liu, R., Bi, Y., Kiyokawa, H. & Yin, J., Dec 1 2017, In : Nature communications. 8, 1, 2232.

Research output: Contribution to journalArticle

Ubiquitination
Ubiquitin
Substrates
proteins
Catenins
11 Citations (Scopus)

Immune Responses to Tissue-Restricted Nonmajor Histocompatibility Complex Antigens in Allograft Rejection

Bharat, A. & Mohanakumar, T., Jan 1 2017, In : Journal of Immunology Research. 2017, 6312514.

Research output: Contribution to journalReview article

Histocompatibility Antigens
Autoantigens
Major Histocompatibility Complex
Allografts
Autoimmunity
123 Citations (Scopus)

Improving genetic diagnosis in Mendelian disease with transcriptome sequencing

Other members of the AWG, Genotype-Tissue Expression Consortium, National Institutes of Health (NIH) Common Fund, iospecimen Collection Source Site-National Disease Research Interchange, Biospecimen Collection Source Site-Roswell Park Cancer Institute, Biospecimen Core Resource-Van Andel Research Institute, Brain Bank Repository-University of Miami, Leidos Biomedical Project Management, Ethical, Legal, and Social Implications Study, Genome Browser Data Integration, and Visualization-European Bioinformatics Institute, Genome Browser Data Integration and Visualization-Genomics Institute, University of California, Santa Cruz:, LDACC-Analysis Working Group (AWG), Funded Statistical Methods groups-AWG, Enhancing GTEx funded Group, NIH/NHGRI, NIH/NCI, NIH/NIMH & NIH/NIDA, Apr 19 2017, In : Science translational medicine. 9, 386, eaal5209.

Research output: Contribution to journalArticle

Transcriptome
RNA Sequence Analysis
Rare Diseases
Collagen
Exome
92 Citations (Scopus)

Landscape of X chromosome inactivation across human tissues

GTEx Consortium, Oct 11 2017, In : Nature. 550, 7675, p. 244-248 5 p.

Research output: Contribution to journalArticle

Open Access
X Chromosome Inactivation
Genes
X Chromosome
Transcriptome
Sexism
2 Citations (Scopus)

Left ventricular outflow tract closure during LVAD implantation: 2 cases of patients supported for over 6 years

Critsinelis, A., Kurihara, C., Kawabori, M., Sugiura, T., Civitello, A. B., Frazier, O. H. & Morgan, J. A., Dec 1 2017, In : Journal of Artificial Organs. 20, 4, p. 350-353 4 p.

Research output: Contribution to journalArticle

Left ventricular assist devices
Heart-Assist Devices
Durability
Heart Failure

Lobar necrosis from pulmonary embolism

Fernandez, R., Tomasko, J. M., Edgren, D. & Bharat, A., Mar 1 2017, In : American journal of respiratory and critical care medicine. 195, 5, p. 685-686 2 p.

Research output: Contribution to journalComment/debate

Pulmonary Embolism
Necrosis
3 Citations (Scopus)

Long Single-Molecule Reads Can Resolve the Complexity of the Influenza Virus Composed of Rare, Closely Related Mutant Variants

Artyomenko, A., Wu, N. C., Mangul, S., Eskin, E., Sun, R. & Zelikovsky, A., Jun 1 2017, In : Journal of Computational Biology. 24, 6, p. 558-570 13 p.

Research output: Contribution to journalArticle

Influenza
Nucleotides
Orthomyxoviridae
Viruses
Mutant
2 Citations (Scopus)

Lung injury and loss of regulatory t cells primes for lung-restricted autoimmunity

Akbarpour, M. & Bharat, A., Jan 1 2017, In : Critical Reviews in Immunology. 37, 1, p. 23-37 15 p.

Research output: Contribution to journalReview article

Lung Injury
Autoimmunity
Lung
Allografts
Lung Transplantation

Lung Procurement After Cardiac Death in a Donor With Previous Median Sternotomy

Kurihara, C., Kawabori, M., Ono, M., Hussain, S. T., Parulekar, A. D., Morgan, J. A. & Loor, G., Nov 1 2017, In : Annals of Thoracic Surgery. 104, 5, p. e371-e373

Research output: Contribution to journalArticle

Sternotomy
Tissue Donors
Lung
Tissue and Organ Procurement
Lung Transplantation

Measuring Error Identification and Recovery Skills in Surgical Residents

Sternbach, J. M., Wang, K., El Khoury, R., Teitelbaum, E. N. & Meyerson, S. L., Feb 1 2017, In : Annals of Thoracic Surgery. 103, 2, p. 663-669 7 p.

Research output: Contribution to journalArticle

Pulmonary Veins
Task Performance and Analysis
Patient Safety
Teaching

Mechanical circulatory support to bridge to a long-term continuous-flow left ventricular assist device as a bridge to heart transplantation

Kurihara, C., Dec 6 2017, Mechanical Circulatory Support for Advanced Heart Failure: A Texas Heart Institute/Baylor College of Medicine Approach. Springer International Publishing, p. 203-207 5 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Heart-Assist Devices
Heart Transplantation

Mobile intramural gastroesophageal junction mass

Kanter, J., Khan, F. & Bharat, A., Feb 1 2017, In : JAMA surgery. 152, 2, p. 201-202 2 p.

Research output: Contribution to journalReview article

Esophagogastric Junction
125 Citations (Scopus)

Monocyte-derived alveolar macrophages drive lung fibrosis and persist in the lung over the life span

Misharin, A. V., Morales-Nebreda, L., Reyfman, P. A., Cuda, C. M., Walter, J. M., McQuattie-Pimentel, A. C., Chen, C. I., Anekalla, K. R., Joshi, N., Williams, K. J. N., Abdala-Valencia, H., Yacoub, T. J., Chi, M., Chiu, S., Gonzalez-Gonzalez, F. J., Gates, K., Lam, A. P., Nicholson, T. T., Homan, P. J., Soberanes, S. & 23 others, Dominguez, S., Morgan, V. K., Saber, R., Shaffer, A., Hinchcliff, M., Marshall, S. A., Bharat, A., Berdnikovs, S., Bhorade, S. M., Bartom, E. T., Morimoto, R. I., Balch, W. E., Sznajder, J. I., Chandel, N. S., Mutlu, G. M., Jain, M., Gottardi, C. J., Singer, B. D., Ridge, K. M., Bagheri, N., Shilatifard, A., Budinger, G. R. S. & Perlman, H., Aug 1 2017, In : Journal of Experimental Medicine. 214, 8, p. 2387-2404 18 p.

Research output: Contribution to journalArticle

Alveolar Macrophages
Fibrosis
Macrophages
Lung
Monocytes
33 Citations (Scopus)

Nationwide Assessment of Robotic Lobectomy for Non-Small Cell Lung Cancer

Rajaram, R., Mohanty, S., Bentrem, D. J., Pavey, E. S., Odell, D. D., Bharat, A., Bilimoria, K. Y. & DeCamp Jr, M. M., Apr 1 2017, In : Annals of Thoracic Surgery. 103, 4, p. 1092-1100 9 p.

Research output: Contribution to journalArticle

Robotics
Non-Small Cell Lung Carcinoma
Logistic Models
High-Volume Hospitals
Odds Ratio
1 Citation (Scopus)

Non-classical monocytes in tissue injury and cancer

Bharat, A., McQuattie-Pimentel, A. C. & Budinger, G. R. S., Jan 1 2017, In : Oncotarget. 8, 63, p. 106171-106172 2 p.

Research output: Contribution to journalEditorial

Monocytes
Neutrophils
Wounds and Injuries
Neoplasms
365 Citations (Scopus)

Non-small cell lung cancer, version 5.2017: Clinical practice guidelines in oncology

Ettinger, D. S., Wood, D. E., Aisner, D. L., Akerley, W., Bauman, J., Chirieac, L. R., D'Amico, T. A., DeCamp Jr, M. M., Dilling, T. J., Dobelbower, M., Doebele, R. C., Govindan, R., Gubens, M. A., Hennon, M., Horn, L., Komaki, R., Lackner, R. P., Lanuti, M., Leal, T. A., Leisch, L. J. & 15 others, Lilenbaum, R., Lin, J., Loo, B. W., Martins, R., Otterson, G. A., Reckamp, K., Riely, G. J., Schild, S. E., Shapiro, T. A., Stevenson, J., Swanson, S. J., Tauer, K., Yang, S. C., Gregory, K. & Hughes, M., Apr 1 2017, In : JNCCN Journal of the National Comprehensive Cancer Network. 15, 4, p. 504-535 32 p.

Research output: Contribution to journalReview article

Practice Guidelines
Non-Small Cell Lung Carcinoma
Immunotherapy
Guidelines
Therapeutics
1 Citation (Scopus)

Optimal local therapy for early-stage small cell lung cancer: Surgery needs a seat at the table

Engelhardt, K. E., Odell, D. D. & DeCamp Jr, M. M., Oct 1 2017, In : Translational Cancer Research. 6, p. S1248-S1252

Research output: Contribution to journalEditorial

Small Cell Lung Carcinoma
Therapeutics

Orientation to the Operating Room: An Introduction to the Surgery Clerkship for Third-Year Medical Students

Barnum, T. J., Salzman, D. H., Odell, D. D., Even, E., Reczynski, A., Corcoran, J. & Halverson, A. L., Nov 14 2017, In : MedEdPORTAL : the journal of teaching and learning resources. 13, 1 p.

Research output: Contribution to journalArticle

Open Access
Operating Rooms
Medical Students
Students
Patient Safety
Patient Transfer
14 Citations (Scopus)

Orthogonal ubiquitin transfer identifies ubiquitination substrates under differential control by the two ubiquitin activating enzymes

Liu, X., Zhao, B., Sun, L., Bhuripanyo, K., Wang, Y., Bi, Y., Davuluri, R. V., Duong, D. M., Nanavati, D., Yin, J. & Kiyokawa, H., Jan 30 2017, In : Nature communications. 8, 14286.

Research output: Contribution to journalArticle

Ubiquitin-Activating Enzymes
Ubiquitination
Ubiquitin
enzymes
Ubiquitin-Conjugating Enzymes

Perforation of a HeartMate II outflow graft

Kawabori, M., Kurihara, C., Cohn, W. E., Civitello, A. B., Frazier, O. H. & Morgan, J. A., Mar 1 2017, In : Journal of Cardiac Surgery. 32, 3, p. 233-234 2 p.

Research output: Contribution to journalArticle

Transplants

Posterior Mediastinal Cyst

Nooromid, M. J. & Bharat, A., Jan 1 2017, In : Annals of Thoracic Surgery. 103, 1, p. e83

Research output: Contribution to journalArticle

Mediastinal Cyst
Video-Assisted Thoracic Surgery
Endosonography
X Ray Computed Tomography
Mediastinum
3 Citations (Scopus)

Preoperative Prealbumin Level as a Predictor of Outcomes in Patients Who Underwent Left Ventricular Assist Device Implantation

Critsinelis, A. C., Kurihara, C., Kawabori, M., Sugiura, T., Civitello, A. B. & Morgan, J. A., Dec 1 2017, In : American Journal of Cardiology. 120, 11, p. 1998-2002 5 p.

Research output: Contribution to journalArticle

Prealbumin
Heart-Assist Devices
Serum
Malnutrition
Mortality

Pulmonary artery sarcoma

Fernandez, R., Edgren, D. & Bharat, A., Feb 1 2017, In : American journal of respiratory and critical care medicine. 195, 3, p. e23-e24

Research output: Contribution to journalShort survey

Sarcoma
Pulmonary Artery
2 Citations (Scopus)

Quality of Operative Performance Feedback Given to Thoracic Surgery Residents Using an App-Based System

Karim, A. S., Sternbach, J. M., Bender, E. M., Zwischenberger, J. B. & Meyerson, S. L., Nov 1 2017, In : Journal of Surgical Education. 74, 6, p. e81-e87

Research output: Contribution to journalArticle

surgery
Thoracic Surgery
resident
performance
evaluation
36 Citations (Scopus)

Readiness of US General Surgery Residents for Independent Practice

George, B. C., Bohnen, J. D., Williams, R. G., Meyerson, S. L., Schuller, M. C., Clark, M. J., Meier, A. H., Torbeck, L., Mandell, S. P., Mullen, J. T., Smink, D. S., Scully, R. E., Chipman, J. G., Auyang, E. D., Terhune, K. P., Wise, P. E., Choi, J. N., Foley, E. F., Dimick, J. B., Choti, M. A. & 6 others, Soper, N. J., Lillemoe, K. D., Zwischenberger, J. B., Dunnington, G. L., Darosa, D. A. & Fryer, J. P., Oct 1 2017, In : Annals of surgery. 266, 4, p. 582-594 13 p.

Research output: Contribution to journalArticle

Internship and Residency
Herniorrhaphy
Femoral Hernia
Ventral Hernia
Appendectomy

Reply

Bharat, A., Jul 1 2017, In : Annals of Thoracic Surgery. 104, 1, p. 368-369 2 p.

Research output: Contribution to journalLetter

10 Citations (Scopus)

Resident Autonomy in the Operating Room: Expectations Versus Reality

Meyerson, S. L., Sternbach, J. M., Zwischenberger, J. B. & Bender, E. M., Sep 1 2017, In : Annals of Thoracic Surgery. 104, 3, p. 1062-1068 7 p.

Research output: Contribution to journalArticle

Operating Rooms
Mobile Applications
Aortic Valve
Mitral Valve
Coronary Artery Bypass

Response to Lee et al.

Feller-Kopman, D., Liu, S., Geisler, B. P., DeCamp Jr, M. M. & Pietzsch, J. B., Sep 1 2017, In : Journal of Thoracic Oncology. 12, 9, p. e152-e153

Research output: Contribution to journalLetter

5 Citations (Scopus)

Sequelae of donor-derived mollicutes transmission in lung recipients

Fernandez, R., Chi, M., Ison, M. G., Waites, K. B., Crabb, D. M., Ratliff, A. E., Cajigas, H. R., DeCamp Jr, M. M., Odell, D. D., Budinger, GR. S. & Bharat, A., Mar 1 2017, In : American journal of respiratory and critical care medicine. 195, 5, p. 687-689 3 p.

Research output: Contribution to journalComment/debate

Tenericutes
Lung
22 Citations (Scopus)

The Effect of Gender on Resident Autonomy in the Operating room

Meyerson, S. L., Sternbach, J. M., Zwischenberger, J. B. & Bender, E. M., Nov 1 2017, In : Journal of Surgical Education. 74, 6, p. e111-e118

Research output: Contribution to journalArticle

Operating Rooms
autonomy
resident
gender
Thoracic Surgery
49 Citations (Scopus)

The impact of rare variation on gene expression across tissues

GTEx Consortium, Oct 11 2017, In : Nature. 550, 7675, p. 239-243 5 p.

Research output: Contribution to journalArticle

Open Access
Gene Expression
Genome
RNA Sequence Analysis
Genetic Code
Genetic Association Studies
1 Citation (Scopus)

The residency application process: Challenges for our specialty

Karim, A. S. & Meyerson, S. L., Jun 1 2017, In : Journal of Thoracic and Cardiovascular Surgery. 153, 6, p. 1618-1620 3 p.

Research output: Contribution to journalEditorial

Internship and Residency
19 Citations (Scopus)

The Society of Thoracic Surgeons Composite Score for Evaluating Esophagectomy for Esophageal Cancer

The Society of Thoracic Surgeons General Thoracic Surgery Database Task Force, May 1 2017, In : Annals of Thoracic Surgery. 103, 5, p. 1661-1667 7 p.

Research output: Contribution to journalArticle

Esophagectomy
Esophageal Neoplasms
Thorax
Mortality
Thoracic Surgery
3 Citations (Scopus)

The Usage of Mock Oral Examinations for Program Improvement

Meyerson, S. L., Lipnick, S. & Hollinger, E., Nov 1 2017, In : Journal of Surgical Education. 74, 6, p. 946-951 6 p.

Research output: Contribution to journalArticle

Oral Diagnosis
surgery
examination
resident
Blood Vessels
4 Citations (Scopus)

Total artificial heart implantation for biventricular failure due to eosinophilic myocarditis

Kawabori, M., Kurihara, C., Miller, Y., Heck, K. A., Bogaev, R. C., Civitello, A. B., Cohn, W. E., Frazier, O. H. & Morgan, J. A., Sep 1 2017, In : Journal of Artificial Organs. 20, 3, p. 266-269 4 p.

Research output: Contribution to journalArticle

Artificial heart
Artificial Heart
Myocarditis
Heart Failure
Hypereosinophilic Syndrome
2 Citations (Scopus)

Under-treatment of small cell lung cancer: The case for surgical resection

Engelhardt, K. E., Odell, D. D. & DeCamp Jr, M. M., Oct 1 2017, In : Journal of Thoracic Disease. 9, 10, p. 3509-3513 5 p.

Research output: Contribution to journalEditorial

Small Cell Lung Carcinoma
17 Citations (Scopus)

Ureaplasma Transmitted From Donor Lungs Is Pathogenic After Lung Transplantation

Fernandez, R., Ratliff, A., Crabb, D., Waites, K. B. & Bharat, A., Feb 1 2017, In : Annals of Thoracic Surgery. 103, 2, p. 670-671 2 p.

Research output: Contribution to journalArticle

Ureaplasma
Hyperammonemia
Lung Transplantation
Lung
Ureaplasma Infections
7 Citations (Scopus)
Extracorporeal Membrane Oxygenation
Lung Transplantation
Cardiopulmonary Bypass
Disease Susceptibility
Therapeutics
9 Citations (Scopus)

What factors influence attending surgeon decisions about resident autonomy in the operating room?

on behalf of the & Procedural Learning and Safety Collaborative, Dec 1 2017, In : Surgery (United States). 162, 6, p. 1314-1319 6 p.

Research output: Contribution to journalArticle

Operating Rooms
Aptitude
Operative Surgical Procedures
Patient Safety
Surgeons
2016
95 Citations (Scopus)

2016 Infectious Diseases Society of America (IDSA) Clinical Practice Guideline for the Treatment of Coccidioidomycosis

Galgiani, J. N., Ampel, N. M., Blair, J. E., Catanzaro, A., Geertsma, F., Hoover, S. E., Johnson, R. H., Kusne, S., Lisse, J., MacDonald, J. D., Meyerson, S. L., Raksin, P. B., Siever, J., Stevens, D. A., Sunenshine, R. & Theodore, N., Sep 15 2016, In : Clinical Infectious Diseases. 63, 6, p. e112-e146

Research output: Contribution to journalArticle

Coccidioidomycosis
Practice Guidelines
Infection
Southwestern United States
Physicians
5 Citations (Scopus)

Ambulatory extracorporeal membrane oxygenation: A surgical innovation for adult respiratory distress syndrome

Bharat, A., Pham, D. T. & Prasad, S. M., May 1 2016, In : JAMA Surgery. 151, 5, p. 478-479 2 p.

Research output: Contribution to journalShort survey

Extracorporeal Membrane Oxygenation
Adult Respiratory Distress Syndrome

Applications of High-Fidelity Sequencing Protocol to RNA Viruses

Mangul, S., Wu, N. C., Nenastyeva, E., Mancuso, N., Zelikovsky, A., Sun, R. & Eskin, E., Sep 6 2016, Computational Methods for Next Generation Sequencing Data Analysis. wiley, p. 85-104 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

RNA
Viruses
Genes
Error correction
Statistics
13 Citations (Scopus)

Are There Gaps in Current Thoracic Surgery Residency Training Programs?

Chu, D., Vaporciyan, A. A., Iannettoni, M. D., Ikonomidis, J. S., Odell, D. D., Shemin, R. J., Starnes, S. L., Stein, W. & Badhwar, V., Jun 1 2016, In : Annals of Thoracic Surgery. 101, 6, p. 2350-2355 6 p.

Research output: Contribution to journalArticle

Robotics
Internship and Residency
Thoracic Surgery
Education
Oral Diagnosis
8 Citations (Scopus)

Atrial arrhythmias after lung transplantation: Incidence and risk factors in 652 lung transplant recipients

D'Angelo, A. M., Chan, E. G., Hayanga, J. W. A., Odell, D. D., Pilewski, J., Crespo, M., Morrell, M., Shigemura, N., Luketich, J., Bermudez, C., Althouse, A. D. & D'Cunha, J., Jan 1 2016, In : Journal of Thoracic and Cardiovascular Surgery. 152, 3, p. 901-909 9 p.

Research output: Contribution to journalArticle

Lung Transplantation
Cardiac Arrhythmias
Lung
Incidence
Coronary Artery Bypass
10 Citations (Scopus)

Characterizing the Operative Experience of Cardiac Surgical Trainees: What are Residents Really Doing in the Operating Room?

Shah, A. A., Aftab, M., Tchantchaleishvili, V., Lapar, D. J., Stephens, E. H., Walters, D. M., Denino, W. F., Odell, D. D., Robich, M., Cevasco, M., Eilers, A. L., Gillaspie, E. A., Goldstone, A., Malas, T., Rice, R. D., Shelstad, R. C. & Andersen, N. D., Jun 1 2016, In : Annals of Thoracic Surgery. 101, 6, p. 2341-2349 9 p.

Research output: Contribution to journalArticle

Operating Rooms
Cardiac Surgical Procedures
Internship and Residency
Aortic Valve
Mitral Valve
13 Citations (Scopus)

CRISPR-Mediated VHL Knockout Generates an Improved Model for Metastatic Renal Cell Carcinoma

Schokrpur, S., Hu, J., Moughon, D. L., Liu, P., Lin, L. C., Hermann, K., Mangul, S., Guan, W., Pellegrini, M., Xu, H. & Wu, L., Jun 30 2016, In : Scientific Reports. 6, 29032.

Research output: Contribution to journalArticle

Open Access
Clustered Regularly Interspaced Short Palindromic Repeats
Hypoxia-Inducible Factor 1
Renal Cell Carcinoma
Epithelial-Mesenchymal Transition
Neoplasms
12 Citations (Scopus)

Development and Evaluation of a Three-Dimensional Multistation Cardiovascular Simulator

Loor, G., Doud, A., Nguyen, T. C., Antonoff, M. B., Morancy, J. D., Robich, M. P., Odell, D. D., Yarboro, L. T., Vaporciyan, A. A. & Roselli, E., Jul 1 2016, In : Annals of Thoracic Surgery. 102, 1, p. 62-68 7 p.

Research output: Contribution to journalArticle

Education
Mitral Valve Annuloplasty
Catheterization
Self Report
Thorax