Surgery, Thoracic Surgery Division

Research Output 1967 2019

2016

Transcriptome Quantification and Differential Expression from NGS Data

Glebova, O., Temate-Tiagueu, Y., Caciula, A., Al Seesi, S., Artyomenko, A., Mangul, S., Lindsay, J., Măndoiu, I. I. & Zelikovsky, A., Sep 6 2016, Computational Methods for Next Generation Sequencing Data Analysis. wiley, p. 301-327 27 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Frequency estimation
Genes
RNA
Transcription
Nucleotides
3 Citations (Scopus)

Understanding why residents may inaccurately log their role in operations: A look at the 2013 in-training examination survey presented at the poster session of the Fifty-first Annual Meeting of the Society of Thoracic Surgeons, San Diego, CA, Jan 24-28, 2015.

Robich, M. P., Flagg, A., LaPar, D. J., Odell, D. D., Stein, W., Aftab, M., Berfield, K. S., Eilers, A. L., Groth, S. S., Lazar, J. F., Shah, A. A., Smith, D. A., Stephens, E. H., Stock, C. T., Denino, W. F., Tchantchaleishvili, V. & Soltesz, E. G., Jan 1 2016, In : Annals of Thoracic Surgery. 101, 1, p. 323-328 6 p.

Research output: Contribution to journalArticle

Posters
Internship and Residency
Thoracic Surgery
Pressure
Surveys and Questionnaires

Wandering pleural mesothelial fatty cyst

Nicholson, T. T., Raparia, K., Mutlu, G. M., Sporn, P. H. S. & Bharat, A., Nov 1 2016, In : American journal of respiratory and critical care medicine. 194, 9, p. 1164-1165 2 p.

Research output: Contribution to journalComment/debate

Cysts
2015
16 Citations (Scopus)

A decade of change: Training and career paths of cardiothoracic surgery residents 2003 to 2014

Stephens, E. H., Odell, D., Stein, W., LaPar, D. J., DeNino, W. F., Aftab, M., Berfield, K., Eilers, A. L., Groth, S., Lazar, J. F., Robich, M. P., Shah, A. A., Smith, D. A., Stock, C., Tchantchaleishvili, V., Mery, C. M., Turek, J. W., Salazar, J. & Nguyen, T. C., Jan 1 2015, In : Annals of Thoracic Surgery. 100, 4, p. 1305-1314 10 p.

Research output: Contribution to journalArticle

Thoracic Surgery
Job Satisfaction
Names
Thorax
Technology
1 Citation (Scopus)

Complex intrathoracic tracheal injury

Wandling, M. W., Hoel, A. W., Meyerson, S. L., Rodriguez Alvarez, H., Shapiro, M. B., Swaroop, M. & Bharat, A., Jul 15 2015, In : American journal of respiratory and critical care medicine. 192, 2, p. e20-e21

Research output: Contribution to journalArticle

Nonpenetrating Wounds
X Ray Computed Tomography
Intratracheal Intubation
Trachea
Young Adult
3 Citations (Scopus)

Counterpoint: Should small-bore pleural catheter placement be the preferred initial management for malignant pleural effusions? No

Gillespie, C. T. & DeCamp Jr, M. M., Jul 1 2015, In : Chest. 148, 1, p. 11-13 3 p.

Research output: Contribution to journalEditorial

Pleurodesis
Malignant Pleural Effusion
Chest Tubes
Catheters
10 Citations (Scopus)

Current integrated cardiothoracic surgery residents: A thoracic surgery residents association survey

Tchantchaleishvili, V., Lapar, D. J., Stephens, E. H., Berfield, K. S., Odell, D. D. & Denino, W. F., Jan 1 2015, In : Annals of Thoracic Surgery. 99, 3, p. 1040-1047 8 p.

Research output: Contribution to journalArticle

Thoracic Surgery
Internship and Residency
Curriculum
Career Choice
Graduate Medical Education
4 Citations (Scopus)

Decreased CXCL12 is associated with impaired alveolar epithelial cell migration and poor lung healing after lung resection

Kanter, J. A., Sun, H., Chiu, S., DeCamp Jr, M. M., Sporn, P. H., Sznajder, J. I. & Bharat, A., Jan 1 2015, In : Surgery (United States). 158, 4, p. 1073-1082 10 p.

Research output: Contribution to journalArticle

Alveolar Epithelial Cells
Cell Movement
Actin Depolymerizing Factors
Lung
Air
38 Citations (Scopus)

Disseminated Ureaplasma infection as a cause of fatal hyperammonemia in humans

Bharat, A., Cunningham, S. A., Budinger, G. R. S., Kreisel, D., DeWet, C. J., Gelman, A. E., Waites, K., Crabb, D., Xiao, L., Bhorade, S., Ambalavanan, N., Dilling, D. F., Lowery, E. M., Astor, T., Hachem, R., Krupnick, A. S., DeCamp, M. M., Ison, M. G. & Patel, R., Apr 22 2015, In : Science translational medicine. 7, 284, p. 284ra59

Research output: Contribution to journalArticle

Ureaplasma Infections
Hyperammonemia
Ammonia
Ureaplasma
Urea
1 Citation (Scopus)
Mammography
ROC Curve
Information Systems
Breast
Random Allocation

Laparoscopic and thoracoscopic esophagectomy with EEA anastomosis

Ripley, R. T., Odell, D. D. & Luketich, J. D., Jan 1 2015, Minimally Invasive Foregut Surgery for Malignancy: Principles and Practice. Springer International Publishing, p. 127-136 10 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Esophagectomy
Length of Stay
Thoracoscopy
Learning Curve
Minimally Invasive Surgical Procedures
18 Citations (Scopus)

MEN1 tumorigenesis in the pituitary and pancreatic islet requires CDK4 but not Cdk2

Gillam, M. P., Nimbalkar, D., Sun, L., Christov, K., Ray, D., Kaldis, P., Liu, X. & Kiyokawa, H., Feb 12 2015, In : Oncogene. 34, 7, p. 932-938 7 p.

Research output: Contribution to journalArticle

Multiple Endocrine Neoplasia Type 1
Islets of Langerhans
Carcinogenesis
Cyclin-Dependent Kinases
Retinoblastoma Protein
17 Citations (Scopus)

National evaluation of hospital readmission after pulmonary resection

Rajaram, R., Ju, M. H., Bilimoria, K. Y., Ko, C. Y. & DeCamp Jr, M. M., Dec 1 2015, In : Journal of Thoracic and Cardiovascular Surgery. 150, 6, p. 1508-1514.e2

Research output: Contribution to journalArticle

Patient Readmission
Pneumonectomy
Lung
Confidence Intervals
Quality Improvement
19 Citations (Scopus)

Nodal stage of surgically resected non-small cell lung cancer and its effect on recurrence patterns and overall survival

Varlotto, J. M., Yao, A. N., DeCamp Jr, M. M., Ramakrishna, S., Recht, A., Flickinger, J., Andrei, A-C., Reed, M. F., Toth, J. W., Fizgerald, T. J., Higgins, K., Zheng, X., Shelkey, J., Medford-Davis, L. N., Belani, C. & Kelsey, C. R., Mar 15 2015, In : International Journal of Radiation Oncology Biology Physics. 91, 4, p. 765-773 9 p.

Research output: Contribution to journalArticle

Non-Small Cell Lung Carcinoma
lungs
cancer
Recurrence
Survival
15 Citations (Scopus)

Parenchymal preserving anatomic resections result in less pulmonary function loss in patients with Stage I non-small cell lung cancer

Macke, R. A., Schuchert, M. J., Odell, D. D., Wilson, D. O., Luketich, J. D. & Landreneau, R. J., Apr 1 2015, In : Journal of Cardiothoracic Surgery. 10, 1, 49.

Research output: Contribution to journalArticle

Non-Small Cell Lung Carcinoma
Lung
Segmental Mastectomy
Respiratory Function Tests
Forced Expiratory Volume

Parenchymal preserving anatomic resections result in less pulmonary function loss in patients with Stage I non-small cell lung cancer

Macke, R. A., Schuchert, M. J., Odell, D. D., Wilson, D. O., Luketich, J. D. & Landreneau, R. J., Apr 1 2015, In : Journal of Cardiothoracic Surgery. 10, 1, 49.

Research output: Contribution to journalArticle

Non-Small Cell Lung Carcinoma
Lung
Segmental Mastectomy
Respiratory Function Tests
Forced Expiratory Volume
2 Citations (Scopus)

Pleural gas analysis for detection of alveolopleural fistulae

Bharat, A., Graf, N., Cassidy, E., Smith, S., Gillespie, C. T., Meyerson, S. L., Sporn, P. H., Sznajder, J. I. & DeCamp Jr, M. M., Jun 1 2015, In : Annals of Thoracic Surgery. 99, 6, p. 2179-2182 4 p.

Research output: Contribution to journalArticle

Fistula
Gases
Oxygen
Chest Tubes
Pneumothorax
24 Citations (Scopus)

Pleural infection: Past, present, and future directions

Corcoran, J. P., Wrightson, J. M., Belcher, E., DeCamp Jr, M. M., Feller-Kopman, D. & Rahman, N. M., Jul 1 2015, In : The Lancet Respiratory Medicine. 3, 7, p. 563-577 15 p.

Research output: Contribution to journalReview article

Infection
Literature
Deoxyribonucleases
Tissue Plasminogen Activator
Direction compound
3 Citations (Scopus)

Predictors of career choice among cardiothoracic surgery trainees

Tchantchaleishvili, V., LaPar, D. J., Odell, D. D., Stein, W., Aftab, M., Berfield, K. S., Eilers, A. L., Groth, S. S., Lazar, J. F., Robich, M. P., Shah, A. A., Smith, D. A., Stephens, E. H., Stock, C. T., DeNino, W. F. & Nguyen, T. C., Jan 1 2015, In : Annals of Thoracic Surgery. 100, 5, p. 1849-1854 6 p.

Research output: Contribution to journalArticle

Career Choice
Thoracic Surgery
Mentors
Thorax
Graduate Medical Education
9 Citations (Scopus)

Preferential expansion of pro-inflammatory Tregs in human non-small cell lung cancer

Phillips, J. D., Knab, L. M., Blatner, N. R., Haghi, L., DeCamp Jr, M. M., Meyerson, S. L., Heiferman, M. J., Heiferman, J. R., Gounari, F., Bentrem, D. J. & Khazaie, K., Sep 21 2015, In : Cancer Immunology, Immunotherapy. 64, 9, p. 1185-1191 7 p.

Research output: Contribution to journalArticle

Non-Small Cell Lung Carcinoma
Lung Neoplasms
T-Lymphocytes
Immune System Diseases
Regulatory T-Lymphocytes
14 Citations (Scopus)
Segmental Mastectomy
Non-Small Cell Lung Carcinoma
Tomography
Lung
Software
2 Citations (Scopus)

Prolonged lung allograft ischemia and posttransplant outcome

Bharat, A., Jan 1 2015, In : JAMA Surgery. 150, 6, 1 p.

Research output: Contribution to journalComment/debate

Primary Graft Dysfunction
Lung Transplantation
Allografts
Ischemia
Lung
4 Citations (Scopus)

Rare Middle Mediastinal Paraganglioma Mimicking Metastatic Neuroendocrine Tumor

Mehta, C. K., Gillespie, C. T., Lin, X., Yeldandi, A. V., DeCamp Jr, M. M. & Bharat, A., Jan 1 2015, In : Annals of Thoracic Surgery. 100, 2, p. 702-705 4 p.

Research output: Contribution to journalArticle

Paraganglioma
Neuroendocrine Tumors
Carcinoid Tumor
Frozen Sections
Lymph Node Excision

Rebuttal from Drs Gillespie and DeCamp

Gillespie, C. T. & DeCamp Jr, M. M., Jul 1 2015, In : Chest. 148, 1, p. 14-15 2 p.

Research output: Contribution to journalArticle

Pleurodesis
Malignant Pleural Effusion
Chest Tubes
Catheters
10 Citations (Scopus)

Resident Perception of Technical Skills Education and Preparation for Independent Practice

Odell, D. D., Macke, R. A., Tchantchaleishvili, V., Loor, G., Nelson, J. S., LaPar, D. J., LaZar, J. F., Wei, B., DeNino, W. F., Berfield, K., Stein, W., Youssef, S. J. & Nguyen, T. C., Jan 1 2015, In : Annals of Thoracic Surgery. 100, 6, p. 2305-2313 9 p.

Research output: Contribution to journalArticle

Education
Operating Rooms
Health Policy
Surveys and Questionnaires
Delivery of Health Care
10 Citations (Scopus)

Resident perceptions of 2-year versus 3-year cardiothoracic training programs

Nguyen, T. C., Terwelp, M. D., Stephens, E. H., Odell, D. D., Loor, G., Lapar, D. J., Denino, W. F., Wei, B., Aftab, M., Macke, R. A., Nelson, J. S., Berfield, K. S., Lazar, J. F., Stein, W., Youssef, S. J. & Tchantchaleishvili, V., Jan 1 2015, In : Annals of Thoracic Surgery. 99, 6, p. 2070-2076 7 p.

Research output: Contribution to journalArticle

Thoracic Surgery
Education
Graduate Medical Education
Accreditation
Private Practice
5 Citations (Scopus)

Risky business: Taking the stigma out of high-risk donation in lung transplantation

Bansal, S., Hayanga, J., Odell, J., Odell, D., Jeong, K., Fabio, A., Luketich, J. & D'Cunha, J., Nov 1 2015, In : Annals of Thoracic Surgery. 100, 5, p. 1787-1794 8 p.

Research output: Contribution to journalArticle

Lung Transplantation
Tissue Donors
Allografts
Survival
Hepatitis B Antibodies
7 Citations (Scopus)

The accuracy of computed tomography to predict completeness of pulmonary fissures: A prospective study

Kent, M. S., Ridge, C., O'Dell, D., Lo, P., Whyte, R. & Gangadharan, S. P., Jan 1 2015, In : Annals of the American Thoracic Society. 12, 5, p. 696-700 5 p.

Research output: Contribution to journalArticle

Tomography
Prospective Studies
Lung
Thoracic Surgery
Observation

Thoracic Inlet Syndrome

Bharat, A., Mckinnon, S. E. & Patterson, P. A., 2015, European Society of Thoracic Surgery Textbook of Thoracic Surgery. TBC: TBC

Research output: Chapter in Book/Report/Conference proceedingChapter

3 Citations (Scopus)

Training Assistants Improves the Process of Adoption of Video-Assisted Thoracic Surgery Lobectomy

Meyerson, S. L., Balderson, S. S. & D'Amico, T. A., Jan 1 2015, In : Annals of Thoracic Surgery. 100, 2, p. 401-406 6 p.

Research output: Contribution to journalArticle

Video-Assisted Thoracic Surgery
Physician Assistants
Aptitude
Frustration
Needs Assessment
15 Citations (Scopus)

Zodiac: A Comprehensive Depiction of Genetic Interactions in Cancer by Integrating TCGA Data

Zhu, Y., Xu, Y., Helseth, D. L., Gulukota, K., Yang, S., Pesce, L. L., Mitra, R., Müller, P., Sengupta, S., Guo, W., Silverstein, J. C., Foster, I., Parsad, N., White, K. P. & Ji, Y., Aug 1 2015, In : Journal of the National Cancer Institute. 107, 8

Research output: Contribution to journalArticle

Open Access
Atlases
Genome
Neoplasms
Genomics
Genes
2014
26 Citations (Scopus)

Accurate viral population assembly from ultra-deep sequencing data

Mangul, S., Wu, N. C., Mancuso, N., Zelikovsky, A., Sun, R. & Eskin, E., Jun 15 2014, In : Bioinformatics. 30, 12

Research output: Contribution to journalArticle

Open Access
Virus Assembly
High-Throughput Nucleotide Sequencing
Sequencing
Genes
Viral Genome
23 Citations (Scopus)

Clinical characteristics and prediction of pulmonary hypertension in severe emphysema

Minai, O. A., Fessler, H., Stoller, J. K., Criner, G. J., Scharf, S. M., Meli, Y., Nutter, B. & DeCamp Jr, M. M., Mar 1 2014, In : Respiratory Medicine. 108, 3, p. 482-490 9 p.

Research output: Contribution to journalArticle

Emphysema
Pulmonary Hypertension
Pulmonary Artery
Air
Hypertension
33 Citations (Scopus)
Epidermal Growth Factor Receptor
Adenocarcinoma
Mutation
Lung Neoplasms
Adenocarcinoma of lung
45 Citations (Scopus)

Defining the autonomy gap: When expectations do not meet reality in the operating room

Meyerson, S. L., Teitelbaum, E. N., George, B. C., Schuller, M. C., DaRosa, D. & Fryer, J. P., Jan 1 2014, In : Journal of Surgical Education. 71, 6, p. e64-e72

Research output: Contribution to journalArticle

Operating Rooms
autonomy
resident
Laparoscopic Cholecystectomy
Operative Surgical Procedures
6 Citations (Scopus)

Development and verification of a taxonomy of assessment metrics for surgical technical skills

Schmitz, C. C., DaRosa, D., Sullivan, M. E., Meyerson, S. L., Yoshida, K. & Korndorffer, J. R., Jan 1 2014, In : Academic Medicine. 89, 1, p. 153-161 9 p.

Research output: Contribution to journalArticle

taxonomy
Motor Skills
Learning Curve
virtual reality
PubMed
22 Citations (Scopus)

Downregulation of Smurf2, a tumor-suppressive ubiquitin ligase, in triple-negative breast cancers: Involvement of the RB-microRNA axis

Liu, X., Gu, X., Sun, L., Flowers, A. B., Rademaker, A. W., Zhou, Y. & Kiyokawa, H., Feb 3 2014, In : BMC cancer. 14, 1, 57.

Research output: Contribution to journalArticle

Triple Negative Breast Neoplasms
Retinoblastoma
Ligases
Ubiquitin
MicroRNAs
15 Citations (Scopus)

HOIL-1L functions as the PKCζ ubiquitin ligase to promote lung tumor growth

Queisser, M. A., Dada, L., Deiss-Yehiely, N., Angulo, M., Zhou, G., Kouri, F., Knab, L. M., Liu, J., Stegh, A. H., DeCamp Jr, M. M., Budinger, GR. S., Chandel, N., Ciechanover, A., Iwai, K. & Sznajder, J. I., Sep 15 2014, In : American journal of respiratory and critical care medicine. 190, 6, p. 688-698 11 p.

Research output: Contribution to journalArticle

Ligases
Ubiquitin
Heme
Lung
Growth
31 Citations (Scopus)

Immune response to tissue-restricted self-antigens induces airway inflammation and fibrosis following murine lung transplantation

Subramanian, V., Ramachandran, S., Banan, B., Bharat, A., Wang, X., Benshoff, N., Kreisel, D., Gelman, A. E. & Mohanakumar, T., Oct 1 2014, In : American Journal of Transplantation. 14, 10, p. 2359-2366 8 p.

Research output: Contribution to journalArticle

Lung Transplantation
Autoantigens
Tubulin
Fibrosis
Inflammation
10 Citations (Scopus)

Managing complications II: Conduit failure and conduit airway fistulas

Meyerson, S. L. & Mehta, C. K., Jan 1 2014, In : Journal of Thoracic Disease. 6, SUPPL.3

Research output: Contribution to journalReview article

Fistula
Esophagectomy
Survivors
Early Diagnosis
Recurrence
21 Citations (Scopus)

'N-of-1-pathways' unveils personal deregulated mechanisms from a single pair of RNA-seq samples: Towards precision medicine

Gardeux, V., Achour, I., Li, J., Maienschein-Cline, M., Li, H., Pesce, L. L., Parinandi, G., Bahroos, N., Winn, R., Foster, I., Garcia, J. G. N. & Lussier, Y. A., Jan 1 2014, In : Journal of the American Medical Informatics Association. 21, 6, p. 1015-1025 11 p.

Research output: Contribution to journalArticle

Open Access
Precision Medicine
RNA
DNA Sequence Analysis
Transcriptome
Epigenomics
5 Citations (Scopus)

Perioperative blood transfusion affects hepatitis C virus (HCV)-specific immune responses and outcome following liver transplantation in HCV-infected patients

Subramanian, V., Bharat, A., Vachharajani, N., Crippin, J., Shenoy, S., Mohanakumar, T. & Chapman, W. C., Jan 1 2014, In : HPB. 16, 3, p. 282-294 13 p.

Research output: Contribution to journalArticle

Blood Transfusion
Hepacivirus
Liver Transplantation
Interleukin-17
Interferons
16 Citations (Scopus)

Regulation of Ku-DNA association by yku70 C-terminal tail and SUMO modification

Hang, L. E., Lopez, C. R., Liu, X., Williams, J. M., Chung, I., Wei, L., Bertuch, A. A. & Zhao, X., Apr 11 2014, In : Journal of Biological Chemistry. 289, 15, p. 10308-10317 10 p.

Research output: Contribution to journalArticle

Sumoylation
DNA Repair
Lysine
DNA
Telomere Shortening
79 Citations (Scopus)

Reliability, validity, and feasibility of the zwisch scale for the assessment of intraoperative performance

George, B. C., Teitelbaum, E. N., Meyerson, S. L., Schuller, M. C., DaRosa, D., Petrusa, E. R., Petito, L. C. & Fryer, J. P., Nov 1 2014, In : Journal of Surgical Education. 71, 6, p. e90-e96

Research output: Contribution to journalArticle

Reproducibility of Results
resident
performance
Workflow
Operating Rooms
2 Citations (Scopus)

Robotic Lobectomy and the Principles of Technology Diffusion

McCarthy, D. P. & DeCamp Jr, M. M., Dec 1 2014, In : Chest. 146, 6, p. 1425-1426 2 p.

Research output: Contribution to journalEditorial

Video-Assisted Thoracic Surgery
Pneumonectomy
Robotics
Technology
Robotic Surgical Procedures
2 Citations (Scopus)

Successful repair of benign left atriogastric fistula after transhiatal esophagectomy

Bharat, A., Damiano, R. & Patterson, G. A., Oct 1 2014, In : Annals of Thoracic Surgery. 98, 4, p. 1475-1477 3 p.

Research output: Contribution to journalArticle

Esophagectomy
Fistula
Stomach
Heart Atria
14 Citations (Scopus)

Surgery for small cell lung cancer

de Hoyos, A. & DeCamp, M. M., Jan 1 2014, In : Thoracic Surgery Clinics. 24, 4, p. 399-409 11 p.

Research output: Contribution to journalReview article

Small Cell Lung Carcinoma
Radiotherapy
Drug Therapy
Lung Neoplasms
8 Citations (Scopus)

Would screening for lung cancer benefit 75- to 84-year-old residents of the United States?

Varlotto, J. M., DeCamp Jr, M. M., Flickinger, J. C., Lake, J., Recht, A., Belani, C. P., Reed, M. F., Toth, J. W., Mackley, H. B., Sciamanna, C. N., Lipton, A., Ali, S. M., Mahraj, R. P. M., Gilbert, C. R. & Yao, N., Jan 1 2014, In : Frontiers in Oncology. 4 MAR, Article 37.

Research output: Contribution to journalArticle

Lung Neoplasms
Age Groups
Survival
Non-Small Cell Lung Carcinoma
Therapeutics
2013
76 Citations (Scopus)

A theory-based model for teaching and assessing residents in the operating room

DaRosa, D., Zwischenberger, J. B., Meyerson, S. L., George, B. C., Teitelbaum, E. N., Soper, N. J. & Fryer, J. P., Jan 1 2013, In : Journal of Surgical Education. 70, 1, p. 24-30 7 p.

Research output: Contribution to journalArticle

Operating Rooms
Teaching
resident
Learning
Education
22 Citations (Scopus)

Duration of faculty training needed to ensure reliable or performance ratings

George, B. C., Teitelbaum, E. N., DaRosa, D., Hungness, E., Meyerson, S. L., Fryer, J. P., Schuller, M. & Zwischenberger, J. B., Jan 1 2013, In : Journal of Surgical Education. 70, 6, p. 703-708 6 p.

Research output: Contribution to journalArticle

rating
performance
surgery
Operating Rooms
Education