Surgery, Thoracic Surgery Division

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  • 2016

    Reference-free comparison of microbial communities via de Bruijn graphs

    Mangul, S. & Koslicki, D., Oct 2 2016, ACM-BCB 2016 - 7th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics. Association for Computing Machinery, Inc, p. 68-77 10 p. (ACM-BCB 2016 - 7th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    5 Scopus citations
  • 2015

    2SNV: Quasispecies reconstruction from PacBio reads

    Artyomenko, A., Wu, N. C., Mangul, S., Eskin, E., Sun, R. & Zelikovsky, A., Dec 2 2015, 2015 IEEE 5th International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2015. Institute of Electrical and Electronics Engineers Inc., 7344730. (2015 IEEE 5th International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2015).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • 2014

    Deterministic regression algorithm for transcriptome frequency estimation

    Caciula, A., Glebova, O., Artyomenko, A., Mangul, S., Lindsay, J., Məndoiu, I. I. & Zelikovsky, A., Jul 24 2014, 2014 IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2014. Institute of Electrical and Electronics Engineers Inc., 6863946. (2014 IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2014).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    1 Scopus citations
  • Reconstruction of influenza a virus variants from PacBio reads

    Artyomenko, A., Mangul, S., Wu, N. C., Eskin, E., Sun, R. & Zelikovsky, A., Jul 24 2014, 2014 IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2014. Institute of Electrical and Electronics Engineers Inc., 6863935. (2014 IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2014).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    1 Scopus citations
  • VGA: A method for viral quasispecies assembly from ultra-deep sequencing data

    Mangul, S., Wu, N. C., Mancuso, N., Zelikovsky, A., Sun, R. & Eskin, E., Jul 24 2014, 2014 IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2014. Institute of Electrical and Electronics Engineers Inc., 6863932. (2014 IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2014).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    4 Scopus citations
  • 2013

    Flexible approach for novel transcript reconstruction from RNA-seq data using maximum likelihood integer programming

    Mangul, S., Caciula, A., Seesi, S. A., Brinza, D., Banday, A. R., Kanadia, R., Mandoiu, I. & Zelikovsky, A., 2013, 5th International Conference on Bioinformatics and Computational Biology 2013, BICoB 2013. p. 25-33 9 p. (5th International Conference on Bioinformatics and Computational Biology 2013, BICoB 2013).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    1 Scopus citations
  • Monte-Carlo Regression algorithm for isoform frequency estimation from RNA-Seq data

    Caciula, A., Zelikovsky, A., Mangul, S., Lindsay, J. & Mandoiu, I., 2013, 2013 IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2013. 6629228. (2013 IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2013).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • 2012

    An Integer Programming approach to novel transcript reconstruction from paired-end RNA-Seq reads

    Mangul, S., Caciula, A., Al Seesi, S., Brinza, D., Banday, A. R. & Kanadia, R., 2012, 2012 ACM Conference on Bioinformatics, Computational Biology and Biomedicine, BCB 2012. p. 369-376 8 p. (2012 ACM Conference on Bioinformatics, Computational Biology and Biomedicine, BCB 2012).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    13 Scopus citations
  • Workshop: Novel transcript reconstruction from paired-end RNA-Seq reads using fragment length distribution

    Mangul, S., Caciula, A., Mandoiu, I. & Zelikovsky, A., 2012, 2012 IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2012. 6182673. (2012 IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2012).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • 2011

    Maximum likelihood estimation of incomplete genomic spectrum from HTS data

    Mangul, S., Astrovskaya, I., Nicolae, M., Tork, B., Mandoiu, I. & Zelikovsky, A., 2011, Algorithms in Bioinformatics - 11th International Workshop, WABI 2011, Proceedings. p. 213-224 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 6833 LNBI).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    2 Scopus citations
  • RNA-Seq based discovery and reconstruction of unannotated transcripts in partially annotated genomes

    Mangul, S., Caciula, A., Mandoiu, I. & Zelikovsky, A., 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011. p. 118-123 6 p. 6112363. (2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    4 Scopus citations