Surgery, Thoracic Surgery Division

Research Output 1967 2019

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Conference contribution
2016

HapIso: An accurate method for the haplotype-specific isoforms reconstruction from long single-molecule reads

Mangul, S., Taegyun Yang, H., Hormozdiari, F., Tseng, E., Zelikovsky, A. & Eskin, E., Jan 1 2016, Bioinformatics Research and Applications - 12th International Symposium, ISBRA 2016, Proceedings. Bourgeois, A., Skums, P., Wan, X. & Zelikovsky, A. (eds.). Springer Verlag, p. 80-92 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9683).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Haplotype
Molecules
Error Rate
Sequencing
RNA
1 Citation (Scopus)

Long single-molecule reads can resolve the complexity of the influenza virus composed of rare, closely related mutant variants

Artyomenko, A., Wu, N. C., Mangul, S., Eskin, E., Sun, R. & Zelikovsky, A., Jan 1 2016, Research in Computational Molecular Biology - 20th Annual Conference, RECOMB 2016, Proceedings. Singh, M. (ed.). Springer Verlag, p. 164-175 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9649).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Influenza
Viruses
Mutant
Virus
Resolve
2012
3 Citations (Scopus)

Granger causality analysis of functional connectivity of spiking neurons in orofacial motor cortex during chewing and swallowing

Takahashi, K., Pesce, L. L., Iriarte-Díaz, J., Kim, S., Coleman, T. P., Hatsopoulos, N. G. & Ross, C. F., Dec 14 2012, 2012 Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2012. p. 4587-4590 4 p. 6346988. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Mastication
Motor Cortex
Deglutition
Causality
Neurons
2 Citations (Scopus)

Granger causality analysis of state dependent functional connectivity of neurons in orofacial motor cortex during chewing and swallowing

Takahashi, K., Pesce, L. L., Iriarte-Diaz, J., Best, M., Kim, S., Coleman, T. P., Hatsopoulos, N. G. & Ross, C. F., Dec 1 2012, 6th International Conference on Soft Computing and Intelligent Systems, and 13th International Symposium on Advanced Intelligence Systems, SCIS/ISIS 2012. p. 1067-1071 5 p. 6505189. (6th International Conference on Soft Computing and Intelligent Systems, and 13th International Symposium on Advanced Intelligence Systems, SCIS/ISIS 2012).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Mastication
Neurons
Kinematics
2010
20 Citations (Scopus)

Estimation of alternative splicing isoform frequencies from RNA-seq data

Nicolae, M., Mangul, S., Mǎndoiu, I. & Zelikovsky, A., Nov 10 2010, Algorithms in Bioinformatics - 10th International Workshop, WABI 2010, Proceedings. p. 202-214 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 6293 LNBI).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Alternative Splicing
RNA
Sequencing
Expectation-maximization Algorithm
Pairing

Repeatability and classifier bias in computer-aided diagnosis for breast ultrasound

Drukker, K., Pesce, L. L. & Giger, M. L., Jan 1 2010, Medical Imaging 2010: Computer-Aided Diagnosis. Summers, R. M. & Karssemeijer, N. (eds.). SPIE, 76242B. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7624).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Computer aided diagnosis
Discriminant Analysis
classifiers
breast
neural nets

Stratified sampling for case selection criteria for evaluating CAD

Nishikawa, R. M. & Pesce, L. L., Jul 21 2010, Digital Mammography - 10th International Workshop, IWDM 2010, Proceedings. p. 534-539 6 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 6136 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Stratified Sampling
Computer aided design
Sampling
Cancer
Performance Assessment
2009
15 Citations (Scopus)

A study of the effect of noise injection on the training of artificial neural networks

Jiang, Y., Zur, R. M., Pesce, L. L. & Drukker, K., Nov 18 2009, 2009 International Joint Conference on Neural Networks, IJCNN 2009. p. 1428-1432 5 p. 5178981. (Proceedings of the International Joint Conference on Neural Networks).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Neural networks
Computer aided diagnosis
1 Citation (Scopus)

Comparison of ROC methods for partially-paired data

Gallas, B. D. & Pesce, L. L., Jun 22 2009, Medical Imaging 2009: Image Perception, Observer Performance, and Technology Assessment. 72630V. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7263).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Statistics
curves
ROC Curve
Area Under Curve
statistics
2007

A Bayesian interpretation of the "proper" binormal ROC model using a uniform prior distribution for the area under the curve

Zur, R. M., Pesce, L. L., Jiang, Y. & Metz, C. E., Oct 15 2007, Medical Imaging 2007: Image Perception, Observer Performance, and Technology Assessment. 651511. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 6515).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

ROC Curve
Area Under Curve
receivers
Markov processes
Maximum likelihood
1 Citation (Scopus)

Imputation methods for temporal radiographic texture analysis in the detection of periprosthetic osteolysis

Wilkie, J. R., Giger, M. L., Pesce, L. L., Engh, C. A., Hopper, R. H. & Martell, J. M., Oct 18 2007, Medical Imaging 2007: Computer-Aided Diagnosis. PART 1 ed. 65141L. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 6514, no. PART 1).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Osteolysis
textures
Textures
bones
iteration