Ali Shilatifard

Search results

• Mll2 branch of the COMPASS family regulates bivalent promoters in mouse embryonic stem cells

  Hu, D. (Contributor), Gao, X. (Contributor) & Shilatifard, A. (Contributor), Gene Expression Omnibus, Jun 20 2013

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE48172

  Dataset

• Zic2, an enhancer-binding factor required for embryonic stem cell specification

  Luo, Z. (Contributor), Gao, X. (Contributor) & Shilatifard, A. (Contributor), Gene Expression Omnibus, Sep 8 2014

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE61188

  Dataset

• Stably-paused genes revealed through inhibition of transcription initiation by the TFIIH inhibitor Triptolide

  Chen, F. (Contributor), Gao, X. (Contributor), Shilatifard, A. (Contributor) & Shilatifard, A. (Contributor), ArrayExpress, 2015

  https://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-63314

  Dataset

• 4X8P : Crystal structure of Ash2L SPRY domain in complex with RbBP5

  Zhang, P. (Contributor), Chaturvedi, C.-P. (Contributor), Brunzelle, J. S. (Contributor), Skiniotis, G. (Contributor), Brand, M. (Contributor), Shilatifard, A. (Contributor) & Couture, J.-F. (Contributor), RCSB-PDB, 2015

  DOI: 10.2210/pdb4x8p/pdb, https://www.rcsb.org/structure/4X8P

  Dataset

• Crystal structure of Ash2L SPRY domain in complex with RbBP5

  Zhang, P. (Contributor), Chaturvedi, C.-P. (Contributor), Tremblay, V. (Contributor), Cramet, M. (Contributor), Brunzelle, J. S. (Contributor), Skiniotis, G. (Contributor), Brand, M. (Contributor), Shilatifard, A. (Contributor) & Couture, J.-F. (Contributor), Protein Data Bank (PDB), Jan 28 2015

  DOI: 10.2210/pdb4X8P/pdb, https://www.wwpdb.org/pdb?id=pdb_00004x8p

  Dataset

• Crystal structure of RbBP5 interacting domain of Cfp1

  Yang, Y. (Contributor), Joshi, M. (Contributor), Takahashi, Y.-H. (Contributor), Ning, Z. (Contributor), Qu, Q. (Contributor), Brunzelle, J. S. (Contributor), Skiniotis, G. (Contributor), Figeys, D. (Contributor), Shilatifard, A. (Contributor) & Couture, J.-F. (Contributor), Protein Data Bank (PDB), Jan 22 2020

  DOI: 10.2210/pdb6VHF/pdb, https://www.wwpdb.org/pdb?id=pdb_00006vhf

  Dataset

• Data from: Set1/COMPASS and Mediator are repurposed to promote epigenetic transcriptional memory

  D’Urso, A. (Contributor), Takahashi, Y.-H. (Creator), Xiong, B. (Creator), Marone, J. (Creator), Coukos, R. (Creator), Randise-Hinchliff, C. (Creator), Wang, J.-P. (Creator), Shilatifard, A. (Creator) & Brickner, J. H. (Creator), Dryad, Jul 7 2016

  DOI: 10.5061/dryad.93fv2, https://datadryad.org/stash/dataset/doi:10.5061/dryad.93fv2

  Dataset

• Crystal structure of human Ash2L (SPRY domain and SDI motif) in complex with full length DPY-30

  Haddad, J. F. (Contributor), Yang, Y. (Contributor), Takahashi, Y.-H. (Contributor), Joshi, M. (Contributor), Chaudhary, N. (Contributor), Woodfin, A. R. (Contributor), Benyoucef, A. (Contributor), Yeung, S. (Contributor), Brunzelle, J. S. (Contributor), Skiniotis, G. (Contributor), Brand, M. (Contributor), Shilatifard, A. (Contributor) & Couture, J.-F. (Contributor), Protein Data Bank (PDB), Aug 8 2018

  DOI: 10.2210/pdb6E2H/pdb, https://www.wwpdb.org/pdb?id=pdb_00006e2h

  Dataset

• Crystal structure of Myceliophteria_thermophila Cps50 (Swd1) beta-propeller domain

  Qu, Q. (Contributor), Takahashi, Y.-H. (Contributor), Yang, Y. (Contributor), Hu, H. (Contributor), Zhang, Y. (Contributor), Brunzelle, J. S. (Contributor), Couture, J.-F. (Contributor), Shilatifard, A. (Contributor) & Skiniotis, G. (Contributor), Protein Data Bank (PDB), Jul 25 2018

  DOI: 10.2210/pdb6E29/pdb, https://www.wwpdb.org/pdb?id=pdb_00006e29

  Dataset

• Histone H3 lysine-to-methionine mutants as a paradigm to study chromatin signaling

  Morgan, M. (Contributor), Gao, X. (Contributor), Jackson, J. (Contributor), Rickels, R. (Contributor), Florens, L. (Contributor) & Shilatifard, A. (Contributor), ArrayExpress, 2014

  https://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-59891

  Dataset

• Crystal structure of DPY-30 dimerization/docking domain in complex with Ash2L Sdc1-DPY-30 Interacting region (SDI)

  Tremblay, V. (Contributor), Zhang, P. (Contributor), Chaturvedi, C.-P. (Contributor), Thornton, J. (Contributor), Brunzelle, J. S. (Contributor), Skiniotis, G. (Contributor), Shilatifard, A. (Contributor), Brand, M. (Contributor) & Couture, J.-F. (Contributor), Protein Data Bank (PDB), Dec 17 2014

  DOI: 10.2210/pdb4RIQ/pdb, https://www.wwpdb.org/pdb?id=pdb_00004riq

  Dataset

• An epigenetic mark of polycomb response elements implemented by Trx/MLL/COMPASS

  Rickels, R. (Contributor), Hu, D. (Contributor), Piunti, A. (Contributor), Mohan, M. (Contributor), Kvon, E. (Contributor) & Shilatifard, A. (Contributor), ArrayExpress, 2016

  https://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-81795

  Dataset

• Effects of H3.3G34V mutation on genomic H3K36 and H3K27 methylation patterns in isogenic pediatric glioma cells

  Huang, T.Y.-T. (Creator), Piunti, A. (Creator), Qi, J. (Creator), Morgan, M. (Creator), Bartom, E. (Creator), Shilatifard, A. (Creator) & Saratsis, A. M. (Creator), figshare, 2020

  DOI: 10.6084/m9.figshare.c.5232708, https://springernature.figshare.com/collections/Effects_of_H3_3G34V_mutation_on_genomic_H3K36_and_H3K27_methylation_patterns_in_isogenic_pediatric_glioma_cells/5232708

  Dataset

• Not All H3K4 methylations are Created Equal: Mll2/COMPASS Dependency in Primordial Germ Cell Specification

  Hu, D. (Contributor), Gao, X. (Contributor) & Shilatifard, A. (Contributor), Gene Expression Omnibus, Feb 26 2016

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE78708

  Dataset

• Mitotic Transcriptional Clearance of Actively Engaged Pol II Through Transcriptional Elongation Control

  Liang, K. (Contributor), Gao, X. (Contributor) & Shilatifard, A. (Contributor), ArrayExpress, 2015

  https://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-71848

  Dataset

• An epigenetic mark of polycomb response elements implemented by Trx/MLL/COMPASS

  Rickels, R. (Contributor), Collings, C. K. (Contributor) & Shilatifard, A. (Contributor), Gene Expression Omnibus, May 23 2016

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE81795

  Dataset

• Data from: Set1/COMPASS and Mediator are repurposed to promote epigenetic transcriptional memory

  D’Urso, A. (Contributor), Takahashi, Y.-H. (Contributor), Xiong, B. (Contributor), Marone, J. (Contributor), Coukos, R. (Contributor), Randise-Hinchliff, C. (Contributor), Wang, J.-P. (Contributor), Shilatifard, A. (Contributor) & Brickner, J. H. (Contributor), ZENODO, Jul 7 2016

  DOI: 10.5061/dryad.93fv2, https://zenodo.org/records/5089972

  Dataset

• Structure of histone H3k4 methyltransferase

  Qu, Q. (Contributor), Takahashi, Y.-H. (Contributor), Yang, Y. (Contributor), Hu, H. (Contributor), Zhang, Y. (Contributor), Brunzelle, J. S. (Contributor), Couture, J.-F. (Contributor), Shilatifard, A. (Contributor) & Skiniotis, G. (Contributor), Protein Data Bank (PDB), Sep 5 2018

  DOI: 10.2210/pdb6BX3/pdb, https://www.wwpdb.org/pdb?id=pdb_00006bx3

  Dataset

• Zic2, an enhancer-binding factor required for embryonic stem cell specification

  Luo, Z. (Contributor), Gao, X. (Contributor), Lin, C. (Contributor), Florens, L. (Contributor) & Shilatifard, A. (Contributor), ArrayExpress, 2015

  https://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-61188

  Dataset

• Inactivation of Ezh2 upregulates Gfi1 and drives aggressive Myc-driven Group 3 medulloblastoma [ChIP-Seq]

  Vo, B. T. (Contributor), Li, C. (Contributor), Morgan, M. A. (Contributor), Theurillat, I. (Contributor), Finkelstein, D. (Contributor), Wright, S. (Contributor), Hyle, J. (Contributor), Smith, S. M. C. (Contributor), Fan, Y. (Contributor), Wang, Y.-D. (Contributor), Wu, G. (Contributor), Orr, B. A. (Contributor), Northcott, P. A. (Contributor), Shilatifard, A. (Contributor), Sherr, C. J. (Contributor) & Roussel, M. F. (Contributor), Gene Expression Omnibus, Jul 25 2016

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE84761

  Dataset

• Mitotic Transcriptional Clearance of Actively Engaged Pol II Through Transcriptional Elongation Control

  Liang, K. (Contributor), Woodfin, A. R. (Contributor) & Shilatifard, A. (Contributor), Gene Expression Omnibus, Aug 7 2015

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE71848

  Dataset

• Therapeutic targeting MLL degradation pathways in MLL-rearranged leukemia

  Liang, K. (Contributor), Smith, E. R. (Contributor) & Shilatifard, A. (Contributor), Gene Expression Omnibus, Nov 3 2016

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE89485

  Dataset

• 4X8N : Crystal structure of Ash2L SPRY domain in complex with phosphorylated RbBP5

  Zhang, P. (Contributor), Chaturvedi, C.-P. (Contributor), Brunzelle, J. S. (Contributor), Skiniotis, G. (Contributor), Brand, M. (Contributor), Shilatifard, A. (Contributor) & Couture, J.-F. (Contributor), RCSB-PDB, 2015

  DOI: 10.2210/pdb4x8n/pdb, https://www.rcsb.org/structure/4X8N

  Dataset

• PAF1, a molecular regulator of promoter-proximal pausing by RNA Polymerase II

  Chen, F. X. (Contributor), Woodfin, A. R. (Contributor) & Shilatifard, A. (Contributor), Gene Expression Omnibus, Jun 30 2015

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE70408

  Dataset

• Crystal structure of Ash2L SPRY domain in complex with phosphorylated RbBP5

  Zhang, P. (Contributor), Chaturvedi, C.-P. (Contributor), Tremblay, V. (Contributor), Cramet, M. (Contributor), Brunzelle, J. S. (Contributor), Skiniotis, G. (Contributor), Brand, M. (Contributor), Shilatifard, A. (Contributor) & Couture, J.-F. (Contributor), Protein Data Bank (PDB), Jan 28 2015

  DOI: 10.2210/pdb4X8N/pdb, https://www.wwpdb.org/pdb?id=pdb_00004x8n

  Dataset