Calculated based on number of publications stored in Pure and citations from Scopus
Calculated based on number of publications stored in Pure and citations from Scopus
Calculated based on number of publications stored in Pure and citations from Scopus
20022023

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  • 2023

    A deep transcriptome meta-analysis reveals sex differences in multiple sclerosis

    Català-Senent, J. F., Andreu, Z., Hidalgo, M. R., Soler-Sáez, I., Roig, F. J., Yanguas-Casás, N., Neva-Alejo, A., López-Cerdán, A., de la Iglesia-Vayá, M., Stranger, B. E. & García-García, F., Jun 1 2023, In: Neurobiology of Disease. 181, 106113.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    2 Scopus citations
  • Deciphering genetic causes for sex differences in human health through drug metabolism and transporter genes

    Huang, Y., Shan, Y., Zhang, W., Lee, A. M., Li, F., Stranger, B. E. & Huang, R. S., Dec 2023, In: Nature communications. 14, 1, 175.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    8 Scopus citations
  • 2022

    Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders

    iPSYCH, Schizophrenia Working Group of the Psychiatric Genomics Consortium, Bipolar Disorder Working Group of the Psychiatric Genomics Consortium, Major Depressive Disorder Working Group of the Psychiatric Genomics Consortium & Sex Differences Cross-Disorder Analysis Group of the Psychiatric Genomics Consortium, Jan 1 2022, In: Biological psychiatry. 91, 1, p. 102-117 16 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    43 Scopus citations
  • 2021

    Examining Sex-Differentiated Genetic Effects Across Neuropsychiatric and Behavioral Traits

    Sex Differences Cross-Disorder Analysis Group of the Psychiatric Genomics Consortium, Jun 15 2021, In: Biological psychiatry. 89, 12, p. 1127-1137 11 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    32 Scopus citations
  • Population-scale tissue transcriptomics maps long non-coding RNAs to complex disease

    GTEx Consortium, May 13 2021, In: Cell. 184, 10, p. 2633-2648.e19

    Research output: Contribution to journalArticlepeer-review

    Open Access
    71 Scopus citations
  • Systematic evaluation of transcriptomics-based deconvolution methods and references using thousands of clinical samples

    Nadel, B. B., Oliva, M., Shou, B. L., Mitchell, K., Ma, F., Montoya, D. J., Mouton, A., Kim-Hellmuth, S., Stranger, B. E., Pellegrini, M. & Mangul, S., Nov 1 2021, In: Briefings in Bioinformatics. 22, 6, bbab265.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    7 Scopus citations
  • The Evolutionary History of Common Genetic Variants Influencing Human Cortical Surface Area

    Tilot, A. K., Khramtsova, E. A., Liang, D., Grasby, K. L., Jahanshad, N., Painter, J., Colodro-Conde, L., Bralten, J., Hibar, D. P., Lind, P. A., Liu, S., Brotman, S. M., Thompson, P. M., Medland, S. E., Macciardi, F., Stranger, B. E., Davis, L. K., Fisher, S. E. & Stein, J. L., Apr 1 2021, In: Cerebral Cortex. 31, 4, p. 1873-1887 15 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    14 Scopus citations
  • 2020

    5-Hydroxymethylcytosine profiles in circulating cell-free DNA associate with disease burden in children with neuroblastoma

    Applebaum, M. A., Barr, E. K., Karpus, J., West-Szymanski, D. C., Oliva, M., Sokol, E. A., Zhang, S., Zhang, Z., Zhang, W., Chlenski, A., Salwen, H. R., Wilkinson, E., Dobratic, M., Grossman, R. L., Godley, L. A., Stranger, B. E., He, C. & Cohn, S. L., Mar 15 2020, In: Clinical Cancer Research. 26, 6, p. 1309-1317 9 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    20 Scopus citations
  • A Quantitative Proteome Map of the Human Body

    GTEx Consortium, Oct 1 2020, In: Cell. 183, 1, p. 269-283.e19

    Research output: Contribution to journalArticlepeer-review

    Open Access
    180 Scopus citations
  • Association of CNVs with methylation variation

    Shi, X., Radhakrishnan, S., Wen, J., Chen, J. Y., Chen, J., Lam, B. A., Mills, R. E., Stranger, B. E., Lee, C. & Setlur, S. R., Dec 1 2020, In: npj Genomic Medicine. 5, 1, 41.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    15 Scopus citations
  • A vast resource of allelic expression data spanning human tissues

    Castel, S. E., Aguet, F., Mohammadi, P., Aguet, F., Anand, S., Ardlie, K. G., Gabriel, S., Getz, G. A., Graubert, A., Hadley, K., Handsaker, R. E., Huang, K. H., Kashin, S., Li, X., MacArthur, D. G., Meier, S. R., Nedzel, J. L., Nguyen, D. T., Segrè, A. V., Todres, E., & 183 othersAguet, F., Anand, S., Ardlie, K. G., Balliu, B., Barbeira, A. N., Battle, A., Bonazzola, R., Brown, A., Brown, C. D., Castel, S. E., Conrad, D. F., Cotter, D. J., Cox, N., Das, S., De Goede, O. M., Dermitzakis, E. T., Einson, J., Engelhardt, B. E., Eskin, E., Eulalio, T. Y., Ferraro, N. M., Flynn, E. D., Fresard, L., Gamazon, E. R., Garrido-Martín, D., Gay, N. R., Getz, G. A., Gloudemans, M. J., Graubert, A., Guigó, R., Hadley, K., Hame, A. R., Handsaker, R. E., He, Y., Hoffman, P. J., Hormozdiari, F., Hou, L., Huang, K. H., Im, H. K., Jo, B., Kasela, S., Kashin, S., Kellis, M., Kim-Hellmuth, S., Kwong, A., Lappalainen, T., Li, X., Li, X., Liang, Y., MacArthur, D. G., Mangul, S., Meier, S. R., Mohammadi, P., Montgomery, S. B., Muñoz-Aguirre, M., Nachun, D. C., Nedzel, J. L., Nguyen, D. T., Nobel, A. B., Oliva, M., Park, Y. S., Park, Y., Parsana, P., Rao, A. S., Reverter, F., Rouhana, J. M., Sabatti, C., Saha, A., Segrè, A. V., Skol, A. D., Stephens, M., Stranger, B. E., Strober, B. J., Teran, N. A., Todres, E., Viñuela, A., Wang, G., Wen, X., Wright, F., Wucher, V., Zou, Y., Ferreira, P. G., Li, G., Melé, M., Yeger-Lotem, E., Barcus, M. E., Bradbury, D., Krubit, T., McLean, J. A., Qi, L., Robinson, K., Roche, N. V., Smith, A. M., Sobin, L., Tabor, D. E., Undale, A., Bridge, J., Brigham, L. E., Foster, B. A., Gillard, B. M., Hasz, R., Hunter, M., Johns, C., Johnson, M., Karasik, E., Kopen, G., Leinweber, W. F., McDonald, A., Moser, M. T., Myer, K., Ramsey, K. D., Roe, B., Shad, S., Thomas, J. A., Walters, G., Washington, M., Wheeler, J., Jewell, S. D., Rohrer, D. C., Valley, D. R., Davis, D. A., Mash, D. C., Barcus, M. E., Branton, P. A., Sobin, L., Barker, L. K., Gardiner, H. M., Mosavel, M., Siminoff, L. A., Flicek, P., Haeussler, M., Juettemann, T., Kent, W. J., Lee, C. M., Powell, C. C., Rosenbloom, K. R., Ruffier, M., Sheppard, D., Taylor, K., Trevanion, S. J., Zerbino, D. R., Abell, N. S., Akey, J., Chen, L., Demanelis, K., Doherty, J. A., Feinberg, A. P., Hansen, K. D., Hickey, P. F., Hou, L., Jasmine, F., Jiang, L., Kaul, R., Kellis, M., Kibriya, M. G., Li, J. B., Li, Q., Lin, S., Linder, S. E., Montgomery, S. B., Oliva, M., Park, Y., Pierce, B. L., Rizzardi, L. F., Skol, A. D., Smith, K. S., Snyder, M., Stamatoyannopoulos, J., Stranger, B. E., Tang, H., Wang, M., Branton, P. A., Carithers, L. J., Guan, P., Koester, S. E., Little, A. R., Moore, H. M., Nierras, C. R., Rao, A. K., Vaught, J. B., Volpi, S., Ardlie, K. G. & Lappalainen, T., Sep 11 2020, In: Genome biology. 21, 1, 234.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    43 Scopus citations
  • Cell type–specific genetic regulation of gene expression across human tissues

    GTEx Consortium, Sep 2020, In: Science. 369, 6509, eaaz8528.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    140 Scopus citations
  • Determinants of telomere length across human tissues

    Demanelis, K., Jasmine, F., Chen, L. S., Chernoff, M., Tong, L., Delgado, D., Zhang, C., Shinkle, J., Sabarinathan, M., Lin, H., Ramirez, E., Oliva, M., Kim-Hellmuth, S., Stranger, B. E., Lai, T. P., Aviv, A., Ardlie, K. G., Aguet, F., Ahsan, H., Doherty, J. A., & 2 othersKibriya, M. G. & Pierce, B. L., Sep 2020, In: Science. 369, 6509, A69.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    210 Scopus citations
  • Genetic analysis of isoform usage in the human anti-viral response reveals influenza-specific regulation of ERAP2 transcripts under balancing selection

    Ye, C. J., Chen, J., Villani, A. C., Gate, R. E., Subramaniam, M., Bhangale, T., Lee, M. N., Raj, T., Raychowdhury, R., Li, W., Rogel, N., Simmons, S., Imboywa, S. H., Chipendo, P. I., McCabe, C., Lee, M. H., Frohlich, I. Y., Stranger, B. E., De Jager, P. L., Regev, A., & 2 othersBehrens, T. & Hacohen, N., 2020, In: Genome research. 28, 12, p. 1812-1825 14 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    40 Scopus citations
  • Integration of genomics and transcriptomics predicts diabetic retinopathy susceptibility genes

    Skol, A. D., Jung, S. C., Sokovic, A. M., Chen, S., Fazal, S., Sosina, O., Borkar, P. P., Lin, A., Sverdlov, M., Cao, D., Swaroop, A., Bebu, I., Stranger, B. E. & Grassi, M. A., Oct 2020, In: eLife. 9, p. 1-20 20 p., e59980.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    16 Scopus citations
  • Pharmacogenomic genotypes define genetic ancestry in patients and enable population-specific genomic implementation

    Hernandez, W., Danahey, K., Pei, X., Yeo, K. T. J., Leung, E., Volchenboum, S. L., Ratain, M. J., Meltzer, D. O., Stranger, B. E., Perera, M. A. & O’Donnell, P. H., Feb 1 2020, In: Pharmacogenomics Journal. 20, 1, p. 126-135 10 p.

    Research output: Contribution to journalArticlepeer-review

    15 Scopus citations
  • The GTEx Consortium atlas of genetic regulatory effects across human tissues

    The GTEx Consortium, Sep 1 2020, In: Science. 369, 6509, p. 1318-1330 13 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    1499 Scopus citations
  • The impact of sex on gene expression across human tissues

    GTEx Consortium, Sep 11 2020, In: Science (New York, N.Y.). 369, 6509

    Research output: Contribution to journalArticlepeer-review

    Open Access
    201 Scopus citations
  • Transcriptomic signatures across human tissues identify functional rare genetic variation

    TOPMed Lipids Working Group & GTEx Consortium, Sep 11 2020, In: Science. 369, 6509, eaaz5900.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    39 Scopus citations
  • 2019

    5-Hydroxymethylcytosine profiles are prognostic of outcome in neuroblastoma and reveal transcriptional networks that correlate with tumor phenotype

    Applebaum, M. A., Barr, E. K., Karpus, J., Nie, J., Zhang, Z., Armstrong, A. E., Uppal, S., Sukhanova, M., Zhang, W., Chlenski, A., Salwen, H. R., Wilkinson, E., Dobratic, M., Grossman, R., Godley, L. A., Stranger, B. E., He, C. & Cohn, S. L., Jan 1 2019, In: JCO Precision Oncology. 3

    Research output: Contribution to journalArticlepeer-review

    Open Access
    12 Scopus citations
  • Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders

    Wellcome Trust Case Control Consortium, Cross-Disorder Group of the Psychiatric Genomics Consortium, 23andMe Research Team & Psychosis Endophenotypes International Consortium, Dec 12 2019, In: Cell. 179, 7, p. 1469-1482.e11

    Research output: Contribution to journalArticlepeer-review

    Open Access
    648 Scopus citations
  • ImmGen report: sexual dimorphism in the immune system transcriptome

    Gal-Oz, S. T., Maier, B., Yoshida, H., Seddu, K., Elbaz, N., Czysz, C., Zuk, O., Stranger, B. E., Ner-Gaon, H. & Shay, T., Dec 1 2019, In: Nature communications. 10, 1, 4295.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    126 Scopus citations
  • Sex differences in gene expression in response to ischemia in the human left ventricular myocardium

    Stone, G., Choi, A., Meritxell, O., Gorham, J., Heydarpour, M., Seidman, C. E., Seidman, J. G., Aranki, S. F., Body, S. C., Carey, V. J., Raby, B. A., Stranger, B. E. & Muehlschlegel, J. D., May 15 2019, In: Human molecular genetics. 28, 10, p. 1682-1693 12 p., ddz014.

    Research output: Contribution to journalArticlepeer-review

    21 Scopus citations
  • Sex differences in the genetic architecture of obsessive–compulsive disorder

    Tourette Syndrome/Obsessive-Compulsive Disorder Working Group of the Psychiatric Genomics Consortium, Sep 2019, In: American Journal of Medical Genetics, Part B: Neuropsychiatric Genetics. 180, 6, p. 351-364 14 p.

    Research output: Contribution to journalArticlepeer-review

    36 Scopus citations
  • 2018

    Exploring the phenotypic consequences of tissue specific gene expression variation inferred from GWAS summary statistics

    Barbeira, A. N., Dickinson, S. P., Bonazzola, R., Zheng, J., Wheeler, H. E., Torres, J. M., Torstenson, E. S., Shah, K. P., Garcia, T., Edwards, T. L., Stahl, E. A., Huckins, L. M., Aguet, F., Ardlie, K. G., Cummings, B. B., Gelfand, E. T., Getz, G., Hadley, K., Handsaker, R. E., Huang, K. H., & 225 othersKashin, S., Karczewski, K. J., Lek, M., Li, X., MacArthur, D. G., Nedzel, J. L., Nguyen, D. T., Noble, M. S., Segrè, A. V., Trowbridge, C. A., Tukiainen, T., Abell, N. S., Balliu, B., Barshir, R., Basha, O., Battle, A., Bogu, G. K., Brown, A., Brown, C. D., Castel, S. E., Chen, L. S., Chiang, C., Conrad, D. F., Damani, F. N., Davis, J. R., Delaneau, O., Dermitzakis, E. T., Engelhardt, B. E., Eskin, E., Ferreira, P. G., Frésard, L., Gamazon, E. R., Garrido-Martín, D., Gewirtz, A. D. H., Gliner, G., Gloudemans, M. J., Guigo, R., Hall, I. M., Han, B., He, Y., Hormozdiari, F., Howald, C., Jo, B., Kang, E. Y., Kim, Y., Kim-Hellmuth, S., Lappalainen, T., Li, G., Li, X., Liu, B., Mangul, S., McCarthy, M. I., McDowell, I. C., Mohammadi, P., Monlong, J., Montgomery, S. B., Muñoz-Aguirre, M., Ndungu, A. W., Nobel, A. B., Oliva, M., Ongen, H., Palowitch, J. J., Panousis, N., Papasaikas, P., Park, Y. S., Parsana, P., Payne, A. J., Peterson, C. B., Quan, J., Reverter, F., Sabatti, C., Saha, A., Sammeth, M., Scott, A. J., Shabalin, A. A., Sodaei, R., Stephens, M., Stranger, B. E., Strober, B. J., Sul, J. H., Tsang, E. K., Urbut, S., Van De Bunt, M., Wang, G., Wen, X., Wright, F. A., Xi, H. S., Yeger-Lotem, E., Zappala, Z., Zaugg, J. B., Zhou, Y. H., Akey, J. M., Bates, D., Chan, J., Claussnitzer, M., Demanelis, K., Diegel, M., Doherty, J. A., Feinberg, A. P., Fernando, M. S., Halow, J., Hansen, K. D., Haugen, E., Hickey, P. F., Hou, L., Jasmine, F., Jian, R., Jiang, L., Johnson, A., Kaul, R., Kellis, M., Kibriya, M. G., Lee, K., Li, J. B., Li, Q., Lin, J., Lin, S., Linder, S., Linke, C., Liu, Y., Maurano, M. T., Molinie, B., Nelson, J., Neri, F. J., Park, Y., Pierce, B. L., Rinaldi, N. J., Rizzardi, L. F., Sandstrom, R., Skol, A., Smith, K. S., Snyder, M. P., Stamatoyannopoulos, J., Tang, H., Wang, L., Wang, M., Van Wittenberghe, N., Wu, F., Zhang, R., Nierras, C. R., Branton, P. A., Carithers, L. J., Guan, P., Moore, H. M., Rao, A., Vaught, J. B., Gould, S. E., Lockart, N. C., Martin, C., Struewing, J. P., Volpi, S., Addington, A. M., Koester, S. E., Little, A. R., Brigham, L. E., Hasz, R., Hunter, M., Johns, C., Johnson, M., Kopen, G., Leinweber, W. F., Lonsdale, J. T., McDonald, A., Mestichelli, B., Myer, K., Roe, B., Salvatore, M., Shad, S., Thomas, J. A., Walters, G., Washington, M., Wheeler, J., Bridge, J., Foster, B. A., Gillard, B. M., Karasik, E., Kumar, R., Miklos, M., Moser, M. T., Jewell, S. D., Montroy, R. G., Rohrer, D. C., Valley, D. R., Davis, D. A., Mash, D. C., Undale, A. H., Smith, A. M., Tabor, D. E., Roche, N. V., McLean, J. A., Vatanian, N., Robinson, K. L., Sobin, L., Barcus, M. E., Valentino, K. M., Qi, L., Hunter, S., Hariharan, P., Singh, S., Um, K. S., Matose, T., Tomaszewski, M. M., Barker, L. K., Mosavel, M., Siminoff, L. A., Traino, H. M., Flicek, P., Juettemann, T., Ruffier, M., Sheppard, D., Taylor, K., Trevanion, S. J., Zerbino, D. R., Craft, B., Goldman, M., Haeussler, M., Kent, W. J., Lee, C. M., Paten, B., Rosenbloom, K. R., Vivian, J., Zhu, J., Nicolae, D. L., Cox, N. J. & Im, H. K., Dec 1 2018, In: Nature communications. 9, 1, 1825.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    486 Scopus citations
  • 2017

    Assocplots: A Python package for static and interactive visualization of multiple-group GWAS results

    Khramtsova, E. A. & Stranger, B. E., Feb 1 2017, In: Bioinformatics. 33, 3, p. 432-434 3 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    11 Scopus citations
  • Co-expression networks reveal the tissue-specific regulation of transcription and splicing

    The GTEx Consortium, Jan 1 2017, In: Genome research. 27, 11, p. 1843-1858 16 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    103 Scopus citations
  • Evaluation of Genetic Predisposition for MYCN-Amplified Neuroblastoma

    Hungate, E. A., Applebaum, M. A., Skol, A. D., Vaksman, Z., Diamond, M., McDaniel, L., Volchenboum, S. L., Stranger, B. E., Maris, J. M., Diskin, S. J., Onel, K. & Cohn, S. L., Oct 1 2017, In: Journal of the National Cancer Institute. 109, 10, djx093.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    18 Scopus citations
  • Identifying cis-mediators for trans-eQTLs across many human tissues using genomic mediation analysis

    The GTEx Consortium, Nov 2017, In: Genome research. 27, 11, p. 1859-1871 13 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    37 Scopus citations
  • Large-Scale trans-eQTLs Affect Hundreds of Transcripts and Mediate Patterns of Transcriptional Co-regulation

    Brynedal, B., Choi, J. M., Raj, T., Bjornson, R., Stranger, B. E., Neale, B. M., Voight, B. F. & Cotsapas, C., Apr 6 2017, In: American journal of human genetics. 100, 4, p. 581-591 11 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    51 Scopus citations
  • Neuroblastoma survivors are at increased risk for second malignancies: A report from the International Neuroblastoma Risk Group Project

    Applebaum, M. A., Vaksman, Z., Lee, S. M., Hungate, E. A., Henderson, T. O., London, W. B., Pinto, N., Volchenboum, S. L., Park, J. R., Naranjo, A., Hero, B., Pearson, A. D., Stranger, B. E., Cohn, S. L. & Diskin, S. J., Feb 1 2017, In: European Journal of Cancer. 72, p. 177-185 9 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    56 Scopus citations
  • 2016

    Genetic architecture of age-related cognitive decline in African Americans

    Raj, T., Chibnik, L. B., McCabe, C., Wong, A., Replogle, J. M., Yu, L., Gao, S., Unverzagt, F. W., Stranger, B. E., Murrell, J., Barnes, L., Hendrie, H. C., Foroud, T., Krichevsky, A., Bennett, D. A., Hall, K. S., Evans, D. A. & De Jager, P. L., 2016, In: Neurology: Genetics. 3, 1, e125.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    19 Scopus citations
  • Imputing Gene Expression in Uncollected Tissues Within and beyond GTEx

    Wang, J., Gamazon, E. R., Pierce, B. L., Stranger, B. E., Im, H. K., Gibbons, R. D., Cox, N. J., Nicolae, D. L. & Chen, L. S., Apr 7 2016, In: American journal of human genetics. 98, 4, p. 697-708 12 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    31 Scopus citations
  • Integrative genomics reveals hypoxia inducible genes that are associated with a poor prognosis in neuroblastoma patients

    Applebaum, M. A., Jha, A. R., Kao, C., Hernandez, K. M., DeWane, G., Salwen, H. R., Chlenski, A., Dobratic, M., Mariani, C. J., Godley, L. A., Prabhakar, N., White, K., Stranger, B. E. & Cohn, S. L., 2016, In: Oncotarget. 7, 47, p. 76816-76826 11 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    29 Scopus citations
  • 2015

    Accurate and Fast Multiple-Testing Correction in eQTL Studies

    Sul, J. H., Raj, T., de Jong, S., de Bakker, P. I. W., Raychaudhuri, S., Ophoff, R. A., Stranger, B. E., Eskin, E. & Han, B., May 1 2015, In: American journal of human genetics. 96, 6, p. 857-868 12 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    17 Scopus citations
  • Design and implementation of the international genetics and translational research in transplantation network

    The International Genetics & Translational Research in Transplantation Network (iGeneTRAiN), Oct 23 2015, In: Transplantation. 99, 11, p. 2401-2412 12 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    55 Scopus citations
  • Disentangling the Effects of Colocalizing Genomic Annotations to Functionally Prioritize Non-coding Variants within Complex-Trait Loci

    Trynka, G., Westra, H. J., Slowikowski, K., Hu, X., Xu, H., Stranger, B. E., Klein, R. J., Han, B. & Raychaudhuri, S., 2015, In: American journal of human genetics. 97, 1, p. 139-152 14 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    83 Scopus citations
  • Expression quantitative trait loci information improves predictive modeling of disease relevance of non-coding genetic variation

    Croteau-Chonka, D. C., Rogers, A. J., Raj, T., McGeachie, M. J., Qiu, W., Ziniti, J. P., Stubbs, B. J., Liang, L., Martinez, F. D., Strunk, R. C., Lemanske, R. F., Liu, A. H., Stranger, B. E., Carey, V. J. & Raby, B. A., Oct 16 2015, In: PloS one. 10, 10, 140758.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    15 Scopus citations
  • Human HLA-G+ extravillous trophoblasts: Immune-activating cells that interact with decidual leukocytes

    Tilburgs, T., Crespo, Â. C., Van Der Zwan, A., Rybalov, B., Raj, T., Stranger, B. E., Gardner, L., Moffett, A. & Strominger, J. L., Jun 9 2015, In: Proceedings of the National Academy of Sciences of the United States of America. 112, 23, p. 7219-7224 6 p.

    Research output: Contribution to journalArticlepeer-review

    145 Scopus citations
  • The impact of human copy number variation on gene expression

    Gamazon, E. R. & Stranger, B. E., Sep 1 2015, In: Briefings in Functional Genomics. 14, 5, p. 352-357 6 p., elv017.

    Research output: Contribution to journalArticlepeer-review

    89 Scopus citations
  • The transcriptional landscape of age in human peripheral blood

    Peters, M. J., Joehanes, R., Pilling, L. C., Schurmann, C., Conneely, K. N., Powell, J., Reinmaa, E., Sutphin, G. L., Zhernakova, A., Schramm, K., Wilson, Y. A., Kobes, S., Tukiainen, T., Ramos, Y. F., Göring, H. H. H., Fornage, M., Liu, Y., Gharib, S. A., Stranger, B. E., De Jager, P. L., & 117 othersAviv, A., Levy, D., Murabito, J. M., Munson, P. J., Huan, T., Hofman, A., Uitterlinden, A. G., Rivadeneira, F., Van Rooij, J., Stolk, L., Broer, L., Verbiest, M. M. P. J., Jhamai, M., Arp, P., Metspalu, A., Tserel, L., Milani, L., Samani, N. J., Peterson, P., Kasela, S., Codd, V., Peters, A., Ward-Caviness, C. K., Herder, C., Waldenberger, M., Roden, M., Singmann, P., Zeilinger, S., Illig, T., Homuth, G., Grabe, H. J., Völzke, H., Steil, L., Kocher, T., Murray, A., Melzer, D., Yaghootkar, H., Bandinelli, S., Moses, E. K., Kent, J. W., Curran, J. E., Johnson, M. P., Williams-Blangero, S., Westra, H. J., McRae, A. F., Smith, J. A., Kardia, S. L. R., Hovatta, I., Perola, M., Ripatti, S., Salomaa, V., Henders, A. K., Martin, N. G., Smith, A. K., Mehta, D., Binder, E. B., Nylocks, K. M., Kennedy, E. M., Klengel, T., Ding, J., Suchy-Dicey, A. M., Enquobahrie, D. A., Brody, J., Rotter, J. I., Chen, Y. D. I., Houwing-Duistermaat, J., Kloppenburg, M., Slagboom, P. E., Helmer, Q., Den Hollander, W., Bean, S., Raj, T., Bakhshi, N., Wang, Q. P., Oyston, L. J., Psaty, B. M., Tracy, R. P., Montgomery, G. W., Turner, S. T., Blangero, J., Meulenbelt, I., Ressler, K. J., Yang, J., Franke, L., Kettunen, J., Visscher, P. M., Neely, G. G., Korstanje, R., Hanson, R. L., Prokisch, H., Ferrucci, L., Esko, T., Teumer, A., Van Meurs, J. B. J., Johnson, A. D., Nalls, M. A., Hernandez, D. G., Cookson, M. R., Gibbs, R. J., Hardy, J., Ramasamy, A., Zonderman, A. B., Dillman, A., Traynor, B., Smith, C., Longo, D. L., Trabzuni, D., Troncoso, J., Van Der Brug, M., Weale, M. E., O'Brien, R., Johnson, R., Walker, R., Zielke, R. H., Arepalli, S., Ryten, M. & Singleton, A. B., Oct 22 2015, In: Nature communications. 6, 8570.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    410 Scopus citations
  • 2014

    CD33: Increased inclusion of exon 2 implicates the Ig V-set domain in Alzheimer's disease susceptibility

    Raj, T., Ryan, K. J., Replogle, J. M., Chibnik, L. B., Rosenkrantz, L., Tang, A., Rothamel, K., Stranger, B. E., Bennett, D. A., Evans, D. A., De Jager, P. L. & Bradshaw, E. M., May 2014, In: Human molecular genetics. 23, 10, p. 2729-2736 8 p., ddt666.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    105 Scopus citations
  • Common genetic variants modulate pathogen-sensing responses in human dendritic cells

    Lee, M. N., Ye, C., Villani, A. C., Raj, T., Li, W., Eisenhaure, T. M., Imboywa, S. H., Chipendo, P. I., Ran, F. A., Slowikowski, K., Ward, L. D., Raddassi, K., McCabe, C., Lee, M. H., Frohlich, I. Y., Hafler, D. A., Kellis, M., Raychaudhuri, S., Zhang, F., Stranger, B. E., & 4 othersBenoist, C. O., De Jager, P. L., Regev, A. & Hacohen, N., 2014, In: Science. 343, 6175, 1246980.

    Research output: Contribution to journalArticlepeer-review

    320 Scopus citations
  • Expression QTL-based analyses reveal candidate causal genes and loci across five tumor types

    Li, Q., Stram, A., Chen, C., Kar, S., Gayther, S., Pharoah, P., Haiman, C., Stranger, B. E., Kraft, P. & Freedman, M. L., Oct 1 2014, In: Human molecular genetics. 23, 19, p. 5294-5302 9 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    63 Scopus citations
  • Genetics of rheumatoid arthritis contributes to biology and drug discovery

    Okada, Y., Wu, D., Trynka, G., Raj, T., Terao, C., Ikari, K., Kochi, Y., Ohmura, K., Suzuki, A., Yoshida, S., Graham, R. R., Manoharan, A., Ortmann, W., Bhangale, T., Denny, J. C., Carroll, R. J., Eyler, A. E., Greenberg, J. D., Kremer, J. M., Pappas, D. A., & 75 othersJiang, L., Yin, J., Ye, L., Su, D. F., Yang, J., Xie, G., Keystone, E., Westra, H. J., Esko, T., Metspalu, A., Zhou, X., Gupta, N., Mirel, D., Stahl, E. A., Diogo, D., Cui, J., Liao, K., Guo, M. H., Myouzen, K., Kawaguchi, T., Coenen, M. J. H., Van Riel, P. L. C. M., Van De Laar, M. A. F. J., Guchelaar, H. J., Huizinga, T. W. J., Dieudé, P., Mariette, X., Bridges, S. L., Zhernakova, A., Toes, R. E. M., Tak, P. P., Miceli-Richard, C., Bang, S. Y., Lee, H. S., Martin, J., Gonzalez-Gay, M. A., Rodriguez-Rodriguez, L., Rantapää-Dahlqvist, S., Ärlestig, L., Choi, H. K., Kamatani, Y., Galan, P., Lathrop, M., Eyre, S., Bowes, J., Barton, A., De Vries, N., Moreland, L. W., Criswell, L. A., Karlson, E. W., Taniguchi, A., Yamada, R., Kubo, M., Liu, J. S., Bae, S. C., Worthington, J., Padyukov, L., Klareskog, L., Gregersen, P. K., Raychaudhuri, S., Stranger, B. E., De Jager, P. L., Franke, L., Visscher, P. M., Brown, M. A., Yamanaka, H., Mimori, T., Takahashi, A., Xu, H., Behrens, T. W., Siminovitch, K. A., Momohara, S., Matsuda, F., Yamamoto, K. & Plenge, R. M., 2014, In: Nature. 506, 7488, p. 376-381 6 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    1597 Scopus citations
  • Interindividual variation in human T regulatory cells

    Ferraro, A., D'Alise, A. M., Raj, T., Asinovski, N., Phillips, R., Ergun, A., Replogle, J. M., Bernier, A., Laffel, L., Stranger, B. E., De Jager, P. L., Mathis, D. & Benoist, C., Mar 25 2014, In: Proceedings of the National Academy of Sciences of the United States of America. 111, 12, p. E1111-E1120

    Research output: Contribution to journalArticlepeer-review

    Open Access
    86 Scopus citations
  • Intersection of population variation and autoimmunity genetics in human T cell activation

    Ye, C. J., Feng, T., Kwon, H. K., Raj, T., Wilson, M. T., Asinovski, N., McCabe, C., Lee, M. H., Frohlich, I., Paik, H. I., Zaitlen, N., Hacohen, N., Stranger, B. E., De Jager, P., Mathis, D., Regev, A. & Benoist, C., Sep 12 2014, In: Science. 345, 6202, 1254665.

    Research output: Contribution to journalArticlepeer-review

    171 Scopus citations
  • Polarization of the effects of autoimmune and neurodegenerative risk alleles in leukocytes

    Raj, T., Rothamel, K., Mostafavi, S., Ye, C., Lee, M. N., Replogle, J. M., Feng, T., Lee, M., Asinovski, N., Frohlich, I., Imboywa, S., Von Korff, A., Okada, Y., Patsopoulos, N. A., Davis, S., McCabe, C., Paik, H. I., Srivastava, G. P., Raychaudhuri, S., Hafler, D. A., & 7 othersKoller, D., Regev, A., Hacohen, N., Mathis, D., Benoist, C., Stranger, B. E. & De Jager, P. L., 2014, In: Science. 344, 6183, p. 519-523 5 p.

    Research output: Contribution to journalArticlepeer-review

    361 Scopus citations
  • Regulation of Gene Expression in Autoimmune Disease Loci and the Genetic Basis of Proliferation in CD4+ Effector Memory T Cells

    Hu, X., Kim, H., Raj, T., Brennan, P. J., Trynka, G., Teslovich, N., Slowikowski, K., Chen, W. M., Onengut, S., Baecher-Allan, C., De Jager, P. L., Rich, S. S., Stranger, B. E., Brenner, M. B. & Raychaudhuri, S., Jun 2014, In: PLoS genetics. 10, 6, e1004404.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    36 Scopus citations
  • 2013

    Balancing Selection on a Regulatory Region Exhibiting Ancient Variation That Predates Human-Neandertal Divergence

    Gokcumen, O., Zhu, Q., Mulder, L. C. F., Iskow, R. C., Austermann, C., Scharer, C. D., Raj, T., Boss, J. M., Sunyaev, S., Price, A., Stranger, B. E., Simon, V. & Lee, C., Apr 2013, In: PLoS genetics. 9, 4, e1003404.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    22 Scopus citations