• 1816 Citations
20082020

Research output per year

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Research Output

  • 1816 Citations
  • 41 Article
  • 3 Comment/debate
  • 1 Short survey
  • 1 Review article
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Article
2020

Exceptional subgenome stability and functional divergence in the allotetraploid Ethiopian cereal teff

VanBuren, R., Man Wai, C., Wang, X., Pardo, J., Yocca, A. E., Wang, H., Chaluvadi, S. R., Han, G., Bryant, D., Edger, P. P., Messing, J., Sorrells, M. E., Mockler, T. C., Bennetzen, J. L. & Michael, T. P., Dec 1 2020, In : Nature communications. 11, 1, 884.

Research output: Contribution to journalArticle

Open Access
6 Scopus citations

Fusarium virguliforme transcriptional plasticity is revealed by host colonization of maize versus soybean

Baetsen-Young, A., Wai, C. M., VanBuren, R. & Day, B., 2020, In : Plant Cell. 32, 2, p. 336-351 16 p.

Research output: Contribution to journalArticle

Open Access
4 Scopus citations

Genomic footprints of repeated evolution of CAM photosynthesis in a Neotropical species radiation

De La Harpe, M., Paris, M., Hess, J., Barfuss, M. H. J., Serrano-Serrano, M. L., Ghatak, A., Chaturvedi, P., Weckwerth, W., Till, W., Salamin, N., Wai, C. M., Ming, R. & Lexer, C., 2020, (Accepted/In press) In : Plant, Cell and Environment.

Research output: Contribution to journalArticle

Intertwined signatures of desiccation and drought tolerance in grasses

Pardo, J., Wai, C. M., Chay, H., Madden, C. F., Hilhorst, H. W. M., Farrant, J. M. & VanBuren, R., May 5 2020, In : Proceedings of the National Academy of Sciences of the United States of America. 117, 18, p. 10079-10088 10 p.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations
2019

Arabidopsis defense mutant ndr1-1 displays accelerated development and early flowering mediated by the hormone gibberellic acid

Dhar, N., Short, D. P. G., Mamo, B. E., Corrion, A. J., Wai, C. M., Anchieta, A., VanBuren, R., Day, B., Ajwa, H., Subbarao, K. V. & Klosterman, S. J., Aug 2019, In : Plant Science. 285, p. 200-213 14 p.

Research output: Contribution to journalArticle

Differential gene expression among three sex types reveals a MALE STERILITY 1 (CpMS1) for sex differentiation in papaya

Zerpa-Catanho, D., Wai, J., Wang, M. L., Yu, LA., Nguyen, J. & Ming, R., Dec 9 2019, In : BMC Plant Biology. 19, 1, 545.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

GingerRoot: A Novel DNA Transposon Encoding Integrase-Related Transposase in Plants and Animals

Cerbin, S., Wai, C. M., Vanburen, R., Jiang, N. & Pritham, E., Nov 1 2019, In : Genome biology and evolution. 11, 11, p. 3181-3193 13 p.

Research output: Contribution to journalArticle

Open Access

Haplotype-phased genome and evolution of phytonutrient pathways of tetraploid blueberry

Colle, M., Leisner, C. P., Wai, C. M., Ou, S., Bird, K. A., Wang, J., Wisecaver, J. H., Yocca, A. E., Alger, E. I., Tang, H., Xiong, Z., Callow, P., Ben-Zvi, G., Brodt, A., Baruch, K., Swale, T., Shiue, L., Song, G. Q., Childs, K. L., Schilmiller, A. & 5 others, Vorsa, N., Robin Buell, C., Vanburen, R., Jiang, N. & Edger, P. P., Jan 31 2019, In : GigaScience. 8, 3

Research output: Contribution to journalArticle

Open Access
15 Scopus citations

Massive tandem proliferation of elips supports convergent evolution of desiccation tolerance across land plants

Van Buren, R., Pardo, J., Wai, C. M., Evans, S. & Bartels, D., Mar 2019, In : Plant Physiology. 179, 3, p. 1040-1049 10 p.

Research output: Contribution to journalArticle

Open Access
7 Scopus citations

Origin and evolution of the octoploid strawberry genome

Edger, P. P., Poorten, T. J., VanBuren, R., Hardigan, M. A., Colle, M., McKain, M. R., Smith, R. D., Teresi, S. J., Nelson, A. D. L., Wai, C. M., Alger, E. I., Bird, K. A., Yocca, A. E., Pumplin, N., Ou, S., Ben-Zvi, G., Brodt, A., Baruch, K., Swale, T., Shiue, L. & 9 others, Acharya, C. B., Cole, G. S., Mower, J. P., Childs, K. L., Jiang, N., Lyons, E., Freeling, M., Puzey, J. R. & Knapp, S. J., Mar 1 2019, In : Nature Genetics. 51, 3, p. 541-547 7 p.

Research output: Contribution to journalArticle

Open Access
75 Scopus citations

The bracteatus pineapple genome and domestication of clonally propagated crops

Chen, L. Y., VanBuren, R., Paris, M., Zhou, H., Zhang, X., Wai, C. M., Yan, H., Chen, S., Alonge, M., Ramakrishnan, S., Liao, Z., Liu, J., Lin, J., Yue, J., Fatima, M., Lin, Z., Zhang, J., Huang, L., Wang, H., Hwa, T. Y. & 25 others, Kao, S. M., Choi, J. Y., Sharma, A., Song, J., Wang, L., Yim, W. C., Cushman, J. C., Paull, R. E., Matsumoto, T., Qin, Y., Wu, Q., Wang, J., Yu, Q., Wu, J., Zhang, S., Boches, P., Tung, C. W., Wang, M. L., Coppens d’Eeckenbrugge, G., Sanewski, G. M., Purugganan, M. D., Schatz, M. C., Bennetzen, J. L., Lexer, C. & Ming, R., Oct 1 2019, In : Nature Genetics. 51, 10, p. 1549-1558 10 p.

Research output: Contribution to journalArticle

Open Access
8 Scopus citations

Time of day and network reprogramming during drought induced CAM photosynthesis in Sedum album

Wai, C. M., Weise, S. E., Ozersky, P., Mockler, T. C., Michael, T. P. & Vanburen, R., Jun 2019, In : PLoS genetics. 15, 6, e1008209.

Research output: Contribution to journalArticle

Open Access
8 Scopus citations
2018

A chromosome-scale assembly of the model desiccation tolerant grass Oropetium thomaeum

VanBuren, R., Wai, C. M., Keilwagen, J. & Pardo, J., Nov 2018, In : Plant Direct. 2, 11, e00096.

Research output: Contribution to journalArticle

Open Access
6 Scopus citations

Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L.

Zhang, J., Zhang, X., Tang, H., Zhang, Q., Hua, X., Ma, X., Zhu, F., Jones, T., Zhu, X., Bowers, J., Wai, C. M., Zheng, C., Shi, Y., Chen, S., Xu, X., Yue, J., Nelson, D. R., Huang, L., Li, Z., Xu, H. & 88 others, Zhou, D., Wang, Y., Hu, W., Lin, J., Deng, Y., Pandey, N., Mancini, M., Zerpa, D., Nguyen, J. K., Wang, L., Yu, L., Xin, Y., Ge, L., Arro, J., Han, J. O., Chakrabarty, S., Pushko, M., Zhang, W., Ma, Y., Ma, P., Lv, M., Chen, F., Zheng, G., Xu, J., Yang, Z., Deng, F., Chen, X., Liao, Z., Zhang, X., Lin, Z., Lin, H., Yan, H., Kuang, Z., Zhong, W., Liang, P., Wang, G., Yuan, Y., Shi, J., Hou, J., Lin, J., Jin, J., Cao, P., Shen, Q., Jiang, Q., Zhou, P., Ma, Y., Zhang, X., Xu, R., Liu, J., Zhou, Y., Jia, H., Ma, Q., Qi, R., Zhang, Z., Fang, J., Fang, H., Song, J., Wang, M., Dong, G., Wang, G., Chen, Z., Ma, T., Liu, H., Dhungana, S. R., Huss, S. E., Yang, X., Sharma, A., Trujillo, J. H., Martinez, M. C., Hudson, M., Riascos, J. J., Schuler, M., Chen, L. Q., Braun, D. M., Li, L., Yu, Q., Wang, J., Wang, K., Schatz, M. C., Heckerman, D., Van Sluys, M. A., Souza, G. M., Moore, P. H., Sankoff, D., VanBuren, R., Paterson, A. H., Nagai, C. & Ming, R., Nov 1 2018, In : Nature Genetics. 50, 11, p. 1565-1573 9 p.

Research output: Contribution to journalArticle

Open Access
73 Scopus citations

A near complete, chromosome-scale assembly of the black raspberry (Rubus occidentalis) genome

VanBuren, R., Wai, C. M., Colle, M., Wang, J., Sullivan, S., Bushakra, J. M., Liachko, I., Vining, K. J., Dossett, M., Finn, C. E., Jibran, R., Chagné, D., Childs, K., Edger, P. P., Mockler, T. C. & Bassil, N. V., Aug 1 2018, In : GigaScience. 7, 8

Research output: Contribution to journalArticle

Open Access
24 Scopus citations

Desiccation tolerance evolved through gene duplication and network rewiring in Lindernia

Van Buren, R., Wai, C. M., Pardo, J., Giarola, V., Ambrosini, S., Song, X. & Bartels, D., Dec 2018, In : Plant Cell. 30, 12, p. 2943-2958 16 p.

Research output: Contribution to journalArticle

Open Access
13 Scopus citations

Differential expression of hormone related genes between extreme segregants of a Saccharum interspecific F2 population

Zhu, F., Wai, C. M., Zhang, J., Jones, T. C., Nagai, C. & Ming, R., Mar 1 2018, In : Euphytica. 214, 3, 55.

Research output: Contribution to journalArticle

Extreme haplotype variation in the desiccation-tolerant clubmoss Selaginella lepidophylla

Vanburen, R., Wai, C. M., Ou, S., Pardo, J., Bryant, D., Jiang, N., Mockler, T. C., Edger, P. & Michael, T. P., Dec 1 2018, In : Nature communications. 9, 1, 13.

Research output: Contribution to journalArticle

Open Access
27 Scopus citations

Transcriptomic analysis of transgressive segregants revealed the central role of photosynthetic capacity and efficiency in biomass accumulation in sugarcane

Singh, R., Jones, T., Wai, C. M., Jifon, J., Nagai, C., Ming, R. & Yu, Q., Dec 1 2018, In : Scientific reports. 8, 1, 4415.

Research output: Contribution to journalArticle

Open Access
4 Scopus citations
2017

Cell wall metabolism and hexose allocation contribute to biomass accumulation in high yielding extreme segregants of a Saccharum interspecific F2 population

Wai, C. M., Zhang, J., Jones, T. C., Nagai, C. & Ming, R., Oct 11 2017, In : BMC Genomics. 18, 1, 773.

Research output: Contribution to journalArticle

Open Access
7 Scopus citations

Diurnal cycling transcription factors of pineapple revealed by genome-wide annotation and global transcriptomic analysis

Sharma, A., Wai, C. M., Ming, R. & Yu, Q., Sep 1 2017, In : Genome biology and evolution. 9, 9, p. 2170-2190 21 p.

Research output: Contribution to journalArticle

Open Access
7 Scopus citations

Seed desiccation mechanisms co-opted for vegetative desiccation in the resurrection grass Oropetium thomaeum

VanBuren, R., Wai, C. M., Zhang, Q., Song, X., Edger, P. P., Bryant, D., Michael, T. P., Mockler, T. C. & Bartels, D., Oct 2017, In : Plant, Cell and Environment. 40, 10, p. 2292-2306 15 p.

Research output: Contribution to journalArticle

Open Access
20 Scopus citations

Temporal and spatial transcriptomic and microRNA dynamics of CAM photosynthesis in pineapple

Wai, C. M., VanBuren, R., Zhang, J., Huang, L., Miao, W., Edger, P. P., Yim, W. C., Priest, H. D., Meyers, B. C., Mockler, T., Smith, J. A. C., Cushman, J. C. & Ming, R., Oct 2017, In : Plant Journal. 92, 1, p. 19-30 12 p.

Research output: Contribution to journalArticle

Open Access
21 Scopus citations

The Kalanchoë genome provides insights into convergent evolution and building blocks of crassulacean acid metabolism

Yang, X., Hu, R., Yin, H., Jenkins, J., Shu, S., Tang, H., Liu, D., Weighill, D. A., Cheol Yim, W., Ha, J., Heyduk, K., Goodstein, D. M., Guo, H. B., Moseley, R. C., Fitzek, E., Jawdy, S., Zhang, Z., Xie, M., Hartwell, J., Grimwood, J. & 29 others, Abraham, P. E., Mewalal, R., Beltrán, J. D., Boxall, S. F., Dever, L. V., Palla, K. J., Albion, R., Garcia, T., Mayer, J. A., Don Lim, S., Man Wai, C., Peluso, P., Van Buren, R., De Paoli, H. C., Borland, A. M., Guo, H., Chen, J. G., Muchero, W., Yin, Y., Jacobson, D. A., Tschaplinski, T. J., Hettich, R. L., Ming, R., Winter, K., Leebens-Mack, J. H., Smith, J. A. C., Cushman, J. C., Schmutz, J. & Tuskan, G. A., Dec 1 2017, In : Nature communications. 8, 1, 1899.

Research output: Contribution to journalArticle

Open Access
42 Scopus citations
2016

Analysis of Alternative Splicing Landscape in Pineapple (Ananas comosus)

Wai, C. M., Powell, B., Ming, R. & Min, X. J., Sep 1 2016, In : Tropical Plant Biology. 9, 3, p. 150-160 11 p.

Research output: Contribution to journalArticle

12 Scopus citations

Balancing selection contributed to domestication of autopolyploid sugarcane (Saccharum officinarum L.)

Arro, J., Park, J. W., Wai, C. M., VanBuren, R., Pan, Y. B., Nagai, C., da Silva, J. & Ming, R., May 1 2016, In : Euphytica. 209, 2, p. 477-493 17 p.

Research output: Contribution to journalArticle

1 Scopus citations

Carbon Flux and Carbohydrate Gene Families in Pineapple

Paull, R. E., Chen, N. J., Ming, R., Wai, C. M., Shirley, N., Schwerdt, J. & Bulone, V., Sep 1 2016, In : Tropical Plant Biology. 9, 3, p. 200-213 14 p.

Research output: Contribution to journalArticle

7 Scopus citations

Extremely low nucleotide diversity in the X-linked region of papaya caused by a strong selective sweep

VanBuren, R., Wai, C. M., Zhang, J., Han, J., Arro, J., Lin, Z., Liao, Z., Yu, Q., Wang, M. L., Zee, F., Moore, R. C., Charlesworth, D. & Ming, R., Nov 28 2016, In : Genome biology. 17, 1, 230.

Research output: Contribution to journalArticle

Open Access
8 Scopus citations

Genome-Wide Identification and Analysis of Genes Encoding Proteolytic Enzymes in Pineapple

Wai, C. M., Powell, B., Ming, R. & Min, X. J., Sep 1 2016, In : Tropical Plant Biology. 9, 3, p. 161-175 15 p.

Research output: Contribution to journalArticle

5 Scopus citations

Identification of microRNAs, phasiRNAs and Their Targets in Pineapple

Zheng, Y., Li, T., Xu, Z., Wai, C. M., Chen, K., Zhang, X., Wang, S., Ji, B., Ming, R. & Sunkar, R., Sep 1 2016, In : Tropical Plant Biology. 9, 3, p. 176-186 11 p.

Research output: Contribution to journalArticle

13 Scopus citations
2015

Assembling allopolyploid genomes: No longer formidable

Ming, R. & Man Wai, C., Jan 31 2015, In : Genome biology. 16, 1, 27.

Research output: Contribution to journalArticle

Open Access
12 Scopus citations

Origin and domestication of papaya Yh chromosome

VanBuren, R., Zeng, F., Chen, C., Zhang, J., Wai, C. M., Han, J., Aryal, R., Gschwend, A. R., Wang, J., Na, J. K., Huang, L., Zhang, L., Miao, W., Gou, J., Arro, J., Guyot, R., Moore, R. C., Wang, M. L., Zee, F., Charlesworth, D. & 3 others, Moore, P. H., Yu, Q. & Ming, R., Apr 1 2015, In : Genome research. 25, 4, p. 524-533 10 p.

Research output: Contribution to journalArticle

Open Access
38 Scopus citations

Sequence-tagged high-density genetic maps of Zoysia japonica provide insights into genome evolution in Chloridoideae

Wang, F., Singh, R., Genovesi, A. D., Wai, C. M., Huang, X., Chandra, A. & Yu, Q., Jun 1 2015, In : Plant Journal. 82, 5, p. 744-757 14 p.

Research output: Contribution to journalArticle

12 Scopus citations

The pineapple genome and the evolution of CAM photosynthesis

Ming, R., VanBuren, R., Wai, C. M., Tang, H., Schatz, M. C., Bowers, J. E., Lyons, E., Wang, M. L., Chen, J., Biggers, E., Zhang, J., Huang, L., Zhang, L., Miao, W., Zhang, J., Ye, Z., Miao, C., Lin, Z., Wang, H., Zhou, H. & 50 others, Yim, W. C., Priest, H. D., Zheng, C., Woodhouse, M., Edger, P. P., Guyot, R., Guo, H. B., Guo, H., Zheng, G., Singh, R., Sharma, A., Min, X., Zheng, Y., Lee, H., Gurtowski, J., Sedlazeck, F. J., Harkess, A., McKain, M. R., Liao, Z., Fang, J., Liu, J., Zhang, X., Zhang, Q., Hu, W., Qin, Y., Wang, K., Chen, L. Y., Shirley, N., Lin, Y. R., Liu, L. Y., Hernandez, A. G., Wright, C. L., Bulone, V., Tuskan, G. A., Heath, K., Zee, F., Moore, P. H., Sunkar, R., Leebens-Mack, J. H., Mockler, T., Bennetzen, J. L., Freeling, M., Sankoff, D., Paterson, A. H., Zhu, X., Yang, X., Smith, J. A. C., Cushman, J. C., Paull, R. E. & Yu, Q., Dec 1 2015, In : Nature Genetics. 47, 12, p. 1435-1442 8 p.

Research output: Contribution to journalArticle

Open Access
198 Scopus citations
2013

Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.)

Ming, R., VanBuren, R., Liu, Y., Yang, M., Han, Y., Li, L. T., Zhang, Q., Kim, M. J., Schatz, M. C., Campbell, M., Li, J., Bowers, J. E., Tang, H., Lyons, E., Ferguson, A. A., Narzisi, G., Nelson, D. R., Blaby-Haas, C. E., Gschwend, A. R., Jiao, Y. & 51 others, Der, J. P., Zeng, F., Han, J., Min, X. J., Hudson, K. A., Singh, R., Grennan, A. K., Karpowicz, S. J., Watling, J. R., Ito, K., Robinson, S. A., Hudson, M. E., Yu, Q., Mockler, T. C., Carroll, A., Zheng, Y., Sunkar, R., Jia, R., Chen, N., Arro, J., Wai, C. M., Wafula, E., Spence, A., Han, Y., Xu, L., Zhang, J., Peery, R., Haus, M. J., Xiong, W., Walsh, J. A., Wu, J., Wang, M. L., Zhu, Y. J., Paull, R. E., Britt, A. B., Du, C., Downie, S. R., Schuler, M. A., Michael, T. P., Long, S. P., Ort, D. R., William Schopf, J., Gang, D. R., Jiang, N., Yandell, M., dePamphilis, C. W., Merchant, S. S., Paterson, A. H., Buchanan, B. B., Li, S. & Shen-Miller, J., May 10 2013, In : Genome biology. 14, 5, R41.

Research output: Contribution to journalArticle

Open Access
166 Scopus citations

Genome size variation among sex types in dioecious and trioecious Caricaceae species

Gschwend, A. R., Wai, C. M., Zee, F., Arumuganathan, A. K. & Ming, R., 2013, In : Euphytica. 189, 3, p. 461-469 9 p.

Research output: Contribution to journalArticle

8 Scopus citations
2012

An integrated cytogenetic and physical map reveals unevenly distributed recombination spots along the papaya sex chromosomes

Wai, C. M., Moore, P. H., Paull, R. E., Ming, R. & Yu, Q., Aug 2012, In : Chromosome Research. 20, 6, p. 753-767 15 p.

Research output: Contribution to journalArticle

16 Scopus citations

Sequencing papaya X and Y h chromosomes reveals molecular basis of incipient sex chromosome evolution

Wang, J., Na, J. K., Yu, Q., Gschwend, A. R., Han, J., Zeng, F., Aryal, R., VanBuren, R., Murray, J. E., Zhang, W., Navajas-Pérez, R., Feltus, F. A., Lemke, C., Tong, E. J., Chen, C., Wai, C. M., Singh, R., Wang, M. L., Min, X. J., Alam, M. & 5 others, Charlesworth, D., Moore, P. H., Jiang, J., Paterson, A. H. & Ming, R., Aug 21 2012, In : Proceedings of the National Academy of Sciences of the United States of America. 109, 34, p. 13710-13715 6 p.

Research output: Contribution to journalArticle

Open Access
144 Scopus citations
2010

Development of Chromosome-specific Cytogenetic Markers and Merging of Linkage Fragments in Papaya

Wai, C. M., Ming, R., Moore, P. H., Paull, R. E. & Yu, Q., 2010, In : Tropical Plant Biology. 3, 3, p. 171-181 11 p.

Research output: Contribution to journalArticle

15 Scopus citations

Integration of Genetic and Cytological Maps and Development of a Pachytene Chromosome-based Karyotype in Papaya

Zhang, W., Wai, C. M., Ming, R., Yu, Q. & Jiang, J., 2010, In : Tropical Plant Biology. 3, 3, p. 166-170 5 p.

Research output: Contribution to journalArticle

22 Scopus citations
2008

The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus)

Ming, R., Hou, S., Feng, Y., Yu, Q., Dionne-Laporte, A., Saw, J. H., Senin, P., Wang, W., Ly, B. V., Lewis, K. L. T., Salzberg, S. L., Feng, L., Jones, M. R., Skelton, R. L., Murray, J. E., Chen, C., Qian, W., Shen, J., Du, P., Eustice, M. & 65 others, Tong, E., Tang, H., Lyons, E., Paull, R. E., Michael, T. P., Wall, K., Rice, D. W., Albert, H., Wang, M. L., Zhu, Y. J., Schatz, M., Nagarajan, N., Acob, R. A., Guan, P., Blas, A., Wai, C. M., Ackerman, C. M., Ren, Y., Liu, C., Wang, J., Wang, J., Na, J. K., Shakirov, E. V., Haas, B., Thimmapuram, J., Nelson, D., Wang, X., Bowers, J. E., Gschwend, A. R., Delcher, A. L., Singh, R., Suzuki, J. Y., Tripathi, S., Neupane, K., Wei, H., Irikura, B., Paidi, M., Jiang, N., Zhang, W., Presting, G., Windsor, A., Navajas-Pérez, R., Torres, M. J., Feltus, F. A., Porter, B., Li, Y., Burroughs, A. M., Luo, M. C., Liu, L., Christopher, D. A., Mount, S. M., Moore, P. H., Sugimura, T., Jiang, J., Schuler, M. A., Friedman, V., Mitchell-Olds, T., Shippen, D. E., Depamphilis, C. W., Palmer, J. D., Freeling, M., Paterson, A. H., Gonsalves, D., Wang, L. & Alam, M., Apr 24 2008, In : Nature. 452, 7190, p. 991-996 6 p.

Research output: Contribution to journalArticle

Open Access
695 Scopus citations