• 1609 Citations
20032020

Research output per year

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Research Output

2020

A genomic integration platform for heterologous cargo encapsulation in 1,2-propanediol utilization bacterial microcompartments

Nichols, T. M., Kennedy, N. W. & Tullman-Ercek, D., Apr 15 2020, In : Biochemical Engineering Journal. 156, 107496.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Apparent size and morphology of bacterial microcompartments varies with technique

Kennedy, N. W., Hershewe, J. M., Nichols, T. M., Roth, E. W., Wilke, C. D., Mills, C. E., Jewett, M. C. & Tullman-Ercek, D., 2020, In : PloS one. 15, 3, e0226395.

Research output: Contribution to journalArticle

Open Access

Multiplexed mass spectrometry of individual ions improves measurement of proteoforms and their complexes

Kafader, J. O., Melani, R. D., Durbin, K. R., Ikwuagwu, B., Early, B. P., Fellers, R. T., Beu, S. C., Zabrouskov, V., Makarov, A. A., Maze, J. T., Shinholt, D. L., Yip, P. F., Tullman-Ercek, D., Senko, M. W., Compton, P. D. & Kelleher, N. L., Apr 1 2020, In : Nature Methods. 17, 4, p. 391-394 4 p.

Research output: Contribution to journalArticle

4 Scopus citations
2019

Cargo encapsulation in bacterial microcompartments: Methods and analysis

Nichols, T. M., Kennedy, N. W. & Tullman-Ercek, D., 2019, Methods in Enzymology. Academic Press Inc, p. 155-186 32 p. (Methods in Enzymology; vol. 617).

Research output: Chapter in Book/Report/Conference proceedingChapter

4 Scopus citations

Editorial overview: Energy biotechnology

Collins, C. H. & Tullman-Ercek, D., Jun 2019, In : Current Opinion in Biotechnology. 57, p. vii-ix

Research output: Contribution to journalEditorial

Experimental Evaluation of Coevolution in a Self-Assembling Particle

Hartman, E. C., Lobba, M. J., Favor, A. H., Robinson, S. A., Francis, M. B. & Tullman-Ercek, D., Mar 19 2019, In : Biochemistry. 58, 11, p. 1527-1538 12 p.

Research output: Contribution to journalArticle

3 Scopus citations

Learning from protein fitness landscapes: a review of mutability, epistasis, and evolution

Hartman, E. C. & Tullman-Ercek, D., Apr 2019, In : Current Opinion in Systems Biology. 14, p. 25-31 7 p.

Research output: Contribution to journalReview article

Systematic Engineering of a Protein Nanocage for High-Yield, Site-Specific Modification

Brauer, D. D., Hartman, E. C., Bader, D. L. V., Merz, Z. N., Tullman-Ercek, D. & Francis, M. B., Mar 6 2019, In : Journal of the American Chemical Society. 141, 9, p. 3875-3884 10 p.

Research output: Contribution to journalArticle

6 Scopus citations
2018

An estimate is worth about a thousand experiments: Using order-of-magnitude estimates to identify cellular engineering targets

Metcalf, K. J., Slininger Lee, M. F., Jakobson, C. M. & Tullman-Ercek, D., Aug 30 2018, In : Microbial Cell Factories. 17, 1, 135.

Research output: Contribution to journalReview article

A Pseudomonas putida efflux pump acts on short-chain alcohols

Basler, G., Thompson, M., Tullman-Ercek, D. & Keasling, J., May 11 2018, In : Biotechnology for Biofuels. 11, 1, 136.

Research output: Contribution to journalArticle

12 Scopus citations

Developing Gram-negative bacteria for the secretion of heterologous proteins

Burdette, L. A., Leach, S. A., Wong, H. T. & Tullman-Ercek, D., Dec 20 2018, In : Microbial Cell Factories. 17, 1, 196.

Research output: Contribution to journalReview article

12 Scopus citations

Engineering expression and function of membrane proteins

Kang, M. K. & Ercek, D. T., Sep 1 2018, In : Methods. 147, p. 66-72 7 p.

Research output: Contribution to journalReview article

2 Scopus citations

Evolutionary engineering improves tolerance for medium-chain alcohols in Saccharomyces cerevisiae

Davis López, S. A., Griffith, D. A., Choi, B., Cate, J. H. D. & Tullman-Ercek, D., Apr 2 2018, In : Biotechnology for Biofuels. 11, 1, 90.

Research output: Contribution to journalArticle

2 Scopus citations

From the Periodic Table to the Dinner Table

Ercek, D. T., 2018, Mom the Chemistry Professor. Woznack, K., Charlebois, A., Cole, R., Marzabadi, C. & Webster, G. (eds.). Springer, Cham, p. 469-484 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Open Access

Quantitative characterization of all single amino acid variants of a viral capsid-based drug delivery vehicle

Hartman, E. C., Jakobson, C. M., Favor, A. H., Lobba, M. J., Álvarez-Benedicto, E., Francis, M. B. & Tullman-Ercek, D., Dec 1 2018, In : Nature communications. 9, 1, 1385.

Research output: Contribution to journalArticle

12 Scopus citations

Spatially organizing biochemistry: Choosing a strategy to translate synthetic biology to the factory

Jakobson, C. M., Tullman-Ercek, D. & Mangan, N. M., Dec 1 2018, In : Scientific reports. 8, 1, 8196.

Research output: Contribution to journalArticle

5 Scopus citations

Type III secretion filaments as templates for metallic nanostructure synthesis

Glasgow, A. A. & Ercek, D. T., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc, p. 155-171 17 p. (Methods in Molecular Biology; vol. 1798).

Research output: Chapter in Book/Report/Conference proceedingChapter

2017

A Secretion-Amplification Role for Salmonella enterica Translocon Protein SipD

Glasgow, A. A., Wong, H. T. & Tullman-Ercek, D., Jun 16 2017, In : ACS synthetic biology. 6, 6, p. 1006-1015 10 p.

Research output: Contribution to journalArticle

5 Scopus citations
22 Scopus citations

De novo design of signal sequences to localize cargo to the 1,2-propanediol utilization microcompartment

Jakobson, C. M., Slininger Lee, M. F. & Tullman-Ercek, D., May 1 2017, In : Protein Science. 26, 5, p. 1086-1092 7 p.

Research output: Contribution to journalArticle

19 Scopus citations

Evidence for Improved Encapsulated Pathway Behavior in a Bacterial Microcompartment through Shell Protein Engineering

Slininger Lee, M. F., Jakobson, C. M. & Tullman-Ercek, D., Oct 20 2017, In : ACS synthetic biology. 6, 10, p. 1880-1891 12 p.

Research output: Contribution to journalArticle

25 Scopus citations
6 Scopus citations

The new frontiers of synthetic biology

Tullman-Ercek, D. & Fussenegger, M., Oct 2017, In : Current Opinion in Systems Biology. 5, p. iv-v

Research output: Contribution to journalEditorial

Use of transcriptional control to increase secretion of heterologous proteins in T3S systems

Metcalf, K. J. & Tullman-Ercek, D., Jan 1 2017, Methods in Molecular Biology. Humana Press Inc., p. 71-79 9 p. (Methods in Molecular Biology; vol. 1531).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations
2016

A Selection for Assembly Reveals That a Single Amino Acid Mutant of the Bacteriophage MS2 Coat Protein Forms a Smaller Virus-like Particle

Asensio, M. A., Morella, N. M., Jakobson, C. M., Hartman, E. C., Glasgow, J. E., Sankaran, B., Zwart, P. H. & Tullman-Ercek, D., Sep 14 2016, In : Nano letters. 16, 9, p. 5944-5950 7 p.

Research output: Contribution to journalArticle

13 Scopus citations

Dumpster Diving in the Gut: Bacterial Microcompartments as Part of a Host-Associated Lifestyle

Jakobson, C. M. & Tullman-Ercek, D., May 1 2016, In : PLoS pathogens. 12, 5, e1005558.

Research output: Contribution to journalReview article

13 Scopus citations

Engineering the spatial organization of proteins for applications in synthetic biology and beyond

Jakobson, C., Slininger, M. F., Kim, E. Y., Glasgow, J. E., Asensio, M. A., Morella, N. M., Hartman, E. C., Chien, A., Chen, Y., Valdivia, E., Francis, M. B., Mangan, N. M. & Tullman-Ercek, D., Jan 1 2016, Meet the Faculty Candidate Poster Session 2016 - Sponsored by the Education Division - Topical Conference at the 2016 AIChE Annual Meeting. AIChE, p. 233-235 3 p. (Meet the Faculty Candidate Poster Session 2016 - Sponsored by the Education Division - Topical Conference at the 2016 AIChE Annual Meeting).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Proteins adopt functionally active conformations after type III secretion

Metcalf, K. J., Bevington, J. L., Rosales, S. L., Burdette, L. A., Valdivia, E. & Tullman-Ercek, D., Dec 23 2016, In : Microbial Cell Factories. 15, 1, 213.

Research output: Contribution to journalArticle

4 Scopus citations

Transcriptional feedback regulation of efflux protein expression for increased tolerance to and production of n-butanol

Boyarskiy, S., Davis López, S., Kong, N. & Tullman-Ercek, D., Jan 1 2016, In : Metabolic Engineering. 33, p. 130-137 8 p.

Research output: Contribution to journalArticle

27 Scopus citations

Tuning the Catalytic Activity of Subcellular Nanoreactors

Jakobson, C. M., Chen, Y., Slininger, M. F., Valdivia, E., Kim, E. Y. & Tullman-Ercek, D., Jul 31 2016, In : Journal of Molecular Biology. 428, 15, p. 2989-2996 8 p.

Research output: Contribution to journalArticle

15 Scopus citations

Type III secretion as a generalizable strategy for the production of full-length biopolymer-forming proteins

Azam, A., Li, C., Metcalf, K. J. & Tullman-Ercek, D., Nov 1 2016, In : Biotechnology and Bioengineering. 113, 11, p. 2313-2320 8 p.

Research output: Contribution to journalArticle

15 Scopus citations

Type-III secretion filaments as scaffolds for inorganic nanostructures

Azam, A. & Tullman-Ercek, D., Jan 1 2016, In : Journal of the Royal Society Interface. 13, 114, 20150938.

Research output: Contribution to journalArticle

4 Scopus citations
2015

Getting pumped: Membrane efflux transporters for enhanced biomolecule production

Boyarskiy, S. & Tullman-Ercek, D., Oct 1 2015, In : Current Opinion in Chemical Biology. 28, p. 15-19 5 p.

Research output: Contribution to journalReview article

16 Scopus citations

Influence of Electrostatics on Small Molecule Flux through a Protein Nanoreactor

Glasgow, J. E., Asensio, M. A., Jakobson, C. M., Francis, M. B. & Tullman-Ercek, D., Sep 18 2015, In : ACS synthetic biology. 4, 9, p. 1011-1019 9 p.

Research output: Contribution to journalArticle

27 Scopus citations

Localization of proteins to the 1,2-propanediol utilization microcompartment by non-native signal sequences is mediated by a common hydrophobic motif

Jakobson, C. M., Kim, E. Y., Slininger, M. F., Chien, A. & Tullman-Ercek, D., Oct 2 2015, In : Journal of Biological Chemistry. 290, 40, p. 24519-24533 15 p.

Research output: Contribution to journalArticle

28 Scopus citations

Metabolism: 'Channeling' hans krebs

Tullman-Ercek, D., Mar 2015, In : Nature Chemical Biology. 11, 3, p. 180-181 2 p.

Research output: Contribution to journalShort survey

4 Scopus citations

Recovery of folded heterologous proteins in the extracellular space from bacterial culture

Metcalf, K. J., Valdivia, E., Azam, A., Rosales, S., Finnerty, C., Bevington, J., Yao, B., Reid, M. & Tullman-Ercek, D., Jan 1 2015, Education Division 2015 - Core Programming Area at the 2015 AIChE Annual Meeting. AIChE, 1 p. (Education Division 2015 - Core Programming Area at the 2015 AIChE Annual Meeting).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2014
27 Scopus citations

Engineering transcriptional regulation to control Pdu microcompartment formation

Kim, E. Y., Jakobson, C. M. & Tullman-Ercek, D., Nov 26 2014, In : PloS one. 9, 11, e113814.

Research output: Contribution to journalArticle

13 Scopus citations

Enhancing tolerance to short-chain alcohols by engineering the Escherichia coli AcrB efflux pump to secrete the non-native substrate n-butanol

Fisher, M. A., Boyarskiy, S., Yamada, M. R., Kong, N., Bauer, S. & Tullman-Ercek, D., Jan 17 2014, In : ACS synthetic biology. 3, 1, p. 30-40 11 p.

Research output: Contribution to journalArticle

59 Scopus citations

From the periodic table to the dinner table

Tullman-Ercek, D., Mar 1 2014, Mom the Chemistry Professor: Personal Accounts and Advice from Chemistry Professors Who are Mothers. Springer International Publishing, p. 113-127 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Production and applications of engineered viral capsids

Glasgow, J. & Tullman-Ercek, D., Jan 1 2014, In : Applied Microbiology and Biotechnology. 98, 13, p. 5847-5858 12 p.

Research output: Contribution to journalReview article

42 Scopus citations

The effects of time, temperature, and pH on the stability of PDU bacterial microcompartments

Kim, E. Y., Slininger, M. F. & Tullman-Ercek, D., Oct 1 2014, In : Protein Science. 23, 10, p. 1434-1441 8 p.

Research output: Contribution to journalArticle

10 Scopus citations

Using transcriptional control to increase titers of secreted heterologous proteins by the type III secretion system

Metcalf, K. J., Tullman-Ercek, D., Azam, A., Valdivia, E. & Metcalf, K. J., 2014, In : Applied and Environmental Microbiology. 80, 19, p. 5927-5934 8 p.

Research output: Contribution to journalArticle

13 Scopus citations
2013

Addition of a carbohydrate-binding module enhances cellulase penetration into cellulose substrates

Reyes-Ortiz, V., Heins, R. A., Cheng, G., Kim, E. Y., Vernon, B. C., Elandt, R. B., Adams, P. D., Sale, K. L., Hadi, M. Z., Simmons, B. A., Kent, M. S. & Tullman-Ercek, D., 2013, In : Biotechnology for Biofuels. 6, 1, 93.

Research output: Contribution to journalArticle

39 Scopus citations

An assay for the bacterial sweet spot

Tullman-Ercek, D., Dec 1 2013, In : Biotechnology Journal. 8, 12, p. 1377-1378 2 p.

Research output: Contribution to journalArticle

11 Scopus citations

Engineering nanoscale protein compartments for synthetic organelles

Kim, E. Y. & Tullman-Ercek, D., Aug 1 2013, In : Current Opinion in Biotechnology. 24, 4, p. 627-632 6 p.

Research output: Contribution to journalReview article

45 Scopus citations

Synthetic biologists spring into action at the 245th American Chemical Society National Meeting

Glasgow, J. E. & Tullman-Ercek, D., Jun 21 2013, In : ACS synthetic biology. 2, 6, p. 293-295 3 p.

Research output: Contribution to journalReview article

2012

Osmolyte-mediated encapsulation of proteins inside MS2 viral capsids

Glasgow, J. E., Capehart, S. L., Francis, M. B. & Tullman-Ercek, D., Oct 23 2012, In : ACS nano. 6, 10, p. 8658-8664 7 p.

Research output: Contribution to journalArticle

73 Scopus citations