Grants per year
Personal profile
Research Interests
Faculty Member, Center for Synthetic Biology We develop high-throughput methods for protein biophysics and protein design, with a focus on protein therapeutics. Key questions include: How do protein sequence and structure determine folding stability, conformational dynamics, and resistance to aggregation/degradation-inducing stresses? Can we quantitatively predict these protein "phenotypes" from genotype (sequence) using computational modeling? How do we design protein therapeutics that optimize these phenotypes for a particular application? To answer these questions, we combine large-scale de novo computational protein design with high-throughput methods such as display selections, mass spectrometry proteomics, and next-generation sequencing, enabling us to test thousands of proteins in parallel. By combining these technologies, we seek to develop efficient "design-test-analyze" cycles, iterating our way to an improved, quantitative understanding of protein biophysics and more advanced protein therapeutics.
Training Experience
2019 | Postdoctoral Fellowship, University of Washington, Institute for Protein Design |
Education/Academic qualification
Biophysics, PhD, University of California San Francisco
… → 2013
Research interests keywords
- Biochemistry: Proteins
- Bioengineering
- Biologic Therapies
- Biophysics
- Computational Biology
- Drug Discovery
- Proteins / Macromolecules
- Proteomics
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- 1 Similar Profiles
Collaborations and top research areas from the last five years
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Improving cDNA display proteolysis for larger projects
Rocklin, G. (PD/PI)
Open Molecular Software Foundation
12/1/24 → 11/30/25
Project: Research project
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RaMP: Post-Baccalaureate Training Program in Biomolecular Structure Prediction and Design
Rocklin, G. (PD/PI)
Johns Hopkins University, National Science Foundation
7/1/23 → 7/31/26
Project: Research project
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Participant Costs receive no F&A
Rocklin, G. (PD/PI)
Johns Hopkins University, National Science Foundation
7/1/23 → 7/31/26
Project: Research project
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REU Site: Synthetic Biology at Northwestern: From Molecules to Society (SynBREU2.0)
Tullman-Ercek, D. (PD/PI), Tullman-Ercek, D. (PD/PI), Tullman-Ercek, D. (PD/PI), Rocklin, G. (Co-PD/PI), Rocklin, G. (Co-PD/PI) & Rocklin, G. (Co-PD/PI)
4/1/22 → 3/31/26
Project: Research project
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JST Presto proposal
Rocklin, G. (PD/PI) & Rocklin, G. (PD/PI)
Japan Science and Technology Agency
4/1/22 → 3/31/25
Project: Research project
Research Output
- 19 Article
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Deconstructing synthetic biology across scales: a conceptual approach for training synthetic biologists
Karim, A. S., Brown, D. M., Archuleta, C. M., Grannan, S., Aristilde, L., Goyal, Y., Leonard, J. N., Mangan, N. M., Prindle, A., Rocklin, G. J., Tyo, K. J., Zoloth, L. S., Jewett, M. C., Calkins, S. C., Kamat, N. P., Tullman-Ercek, D. & Lucks, J. B., Dec 2024, In: Nature communications. 15, 1, 5425.Research output: Contribution to journal › Article › peer-review
Open Access3 Scopus citations -
Heat-induced structural and chemical changes to a computationally designed miniprotein
Dudley, J. A., Park, S., Cho, O., Wells, N. G. M., MacDonald, M. E., Blejec, K. M., Fetene, E., Zanderigo, E., Houliston, S., Liddle, J. C., Dashnaw, C. M., Sabo, T. M., Shaw, B. F., Balsbaugh, J. L., Rocklin, G. J. & Smith, C. A., Jun 2024, In: Protein Science. 33, 6, e4991.Research output: Contribution to journal › Article › peer-review
1 Scopus citations -
In vivo selection of synthetic nucleocapsids for tissue targeting
Olshefsky, A., Benasutti, H., Sylvestre, M., Butterfield, G. L., Rocklin, G. J., Richardson, C., Hicks, D. R., Lajoie, M. J., Song, K., Leaf, E., Treichel, C., Decarreau, J., Ke, S., Kher, G., Carter, L., Chamberlain, J. S., Baker, D., King, N. P. & Pun, S. H., 2023, In: Proceedings of the National Academy of Sciences of the United States of America. 120, 46, e2306129120.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
Mega-scale experimental analysis of protein folding stability in biology and design
Tsuboyama, K., Dauparas, J., Chen, J., Laine, E., Mohseni Behbahani, Y., Weinstein, J. J., Mangan, N. M., Ovchinnikov, S. & Rocklin, G. J., Aug 10 2023, In: Nature. 620, 7973, p. 434-444 11 p.Research output: Contribution to journal › Article › peer-review
Open Access89 Scopus citations -
Dissecting the stability determinants of a challenging de novo protein fold using massively parallel design and experimentation
Kim, T. E., Tsuboyama, K., Houliston, S., Martell, C. M., Phoumyvong, C. M., Lemak, A., Haddox, H. K., Arrowsmith, C. H. & Rocklin, G. J., Oct 11 2022, In: Proceedings of the National Academy of Sciences of the United States of America. 119, 41, e2122676119.Research output: Contribution to journal › Article › peer-review
Open Access5 Scopus citations
Datasets
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Solution structure of a model HEEH mini-protein (HEEH_TK_rd5_0958)
Kim, T.-E. (Contributor), Tsuboyama, K. (Contributor), Houliston, S. (Contributor), Martell, C. M. (Contributor), Phoumyvong, C. M. (Contributor), Lemak, A. (Contributor), Haddox, H. K. (Contributor), Arrowsmith, C. H. (Contributor) & Rocklin, G. J. (Contributor), Protein Data Bank (PDB), Oct 5 2022
DOI: 10.2210/pdb8DOA/pdb, https://www.wwpdb.org/pdb?id=pdb_00008doa
Dataset
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High-throughput design and refinement of stable proteins using sequence-only models
Singer, J. M. (Contributor), Novotney, S. (Contributor), Strickland, D. (Contributor), Haddox, H. K. (Contributor), Leiby, N. (Contributor), Rocklin, G. J. (Contributor), Chow, C. M. (Contributor), Roy, A. (Contributor), Bera, A. K. (Contributor), Motta, F. C. (Contributor), Cao, L. (Contributor), Strauch, E.-M. (Contributor), Chidyausiku, T. M. (Contributor), Ford, A. (Contributor), Ho, E. (Contributor), Zaitzeff, A. (Contributor), Mackenzie, C. O. (Contributor), Eramian, H. (Contributor), Di Maio, F. (Contributor), Grigoryan, G. (Contributor), Vaughn, M. (Contributor), Stewart, L. J. (Contributor), Baker, D. (Contributor) & Klavins, E. (Contributor), Protein Data Bank (PDB), Dec 15 2021
DOI: 10.2210/pdb7KUW/pdb, https://www.wwpdb.org/pdb?id=pdb_00007kuw
Dataset
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Solution structure of the model HEEH mini protein homodimer HEEH_TK_rd5_0341
Kim, T.-E. (Contributor), Tsuboyama, K. (Contributor), Houliston, S. (Contributor), Martell, C. M. (Contributor), Phoumyvong, C. M. (Contributor), Lemak, A. (Contributor), Haddox, H. K. (Contributor), Arrowsmith, C. H. (Contributor) & Rocklin, G. J. (Contributor), Protein Data Bank (PDB), Oct 5 2022
DOI: 10.2210/pdb7T2F/pdb, https://www.wwpdb.org/pdb?id=pdb_00007t2f
Dataset