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Personal profile

Research Interests

My current research continues to focus on new ways to make health care computing more useful. This includes developing intuitive, novel Human Computer Interfaces (HCI) for health care, including working the design of graphical icons for clinical applications, addressing data overload for clinicians and issues in affective computing. A related line of research is developing methods for the integration of clinic research computing into clinical care.

Education/Academic qualification

PhD, Columbia University

… → 1997

MD, Washington University in St. Louis School of Medicine

… → 1987

Keywords

  • Bioinformatics
  • Biomedical Ontologies
  • Computational Biology
  • Information Systems
  • Internet Intervention
  • Medical Informatics
  • Post-Graduate Medical Education

Fingerprint Fingerprint is based on mining the text of the experts' scientific documents to create an index of weighted terms, which defines the key subjects of each individual researcher.

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Grants 2011 2022

Computational Biology
Pneumonia
Microbiota
Biomarkers
Fungal DNA
Intensive care units
Factorization
Medicine
Tensors
Thesauri
Workflow
Information Systems
Outcome Assessment (Health Care)
Software
Patient Reported Outcome Measures

Research Output 1981 2019

An ancillary genomics system to support the return of pharmacogenomic results

Rasmussen, L. V., Smith, M. E., Almaraz, F., Persell, S. D., Rasmussen-Torvik, L. J., Pacheco, J. A., Chisholm, R. L., Christensen, C., Herr, T. M., Wehbe, F. & Starren, J. B., Feb 19 2019, In : Journal of the American Medical Informatics Association. 26, 4, p. 306-310 5 p.

Research output: Contribution to journalArticle

Clinical Decision Support Systems
Electronic Health Records
Pharmacogenetics
Genomics
Information Storage and Retrieval

Characterizing Design Patterns of EHR-Driven Phenotype Extraction Algorithms

Zhong, Y., Rasmussen, L., Deng, Y., Pacheco, J., Smith, M. E., Starren, J. B., Wei, W. Q., Speltz, P., Denny, J., Walton, N., Hripcsak, G., Chute, C. G. & Luo, Y., Jan 21 2019, Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018. Schmidt, H., Griol, D., Wang, H., Baumbach, J., Zheng, H., Callejas, Z., Hu, X., Dickerson, J. & Zhang, L. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 1143-1146 4 p. 8621240. (Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Phenotype
Electronic Health Records
Proxy
Macros
Learning systems

Pharmacogenomic clinical decision support design and multi-site process outcomes analysis in the eMERGE Network

Herr, T. M., Peterson, J. F., Rasmussen, L. V., Caraballo, P. J., Peissig, P. L. & Starren, J. B., Feb 1 2019, In : Journal of the American Medical Informatics Association : JAMIA. 26, 2, p. 143-148 6 p.

Research output: Contribution to journalArticle

Clinical Decision Support Systems
Pharmacogenetics
Electronic Health Records
8 Citations (Scopus)

Segment convolutional neural networks (Seg-CNNs) for classifying relations in clinical notes

Luo, Y., Cheng, Y., Uzuner, Ö., Szolovits, P. & Starren, J. B., Jan 1 2018, In : Journal of the American Medical Informatics Association. 25, 1, p. 93-98 6 p., ocx090.

Research output: Contribution to journalArticle

Learning
Datasets
18 Citations (Scopus)

Natural Language Processing for EHR-Based Pharmacovigilance: A Structured Review

Luo, Y., Thompson, W. K., Herr, T. M., Zeng, Z., Berendsen, M. A., Jonnalagadda, S. R., Carson, M. B. & Starren, J. B., Nov 1 2017, In : Drug Safety. 40, 11, p. 1075-1089 15 p.

Research output: Contribution to journalReview article

Natural Language Processing
Pharmacovigilance
Electronic Health Records
Drug-Related Side Effects and Adverse Reactions
Health