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Research Output

2019

An ancillary genomics system to support the return of pharmacogenomic results

Rasmussen, L. V., Smith, M. E., Almaraz, F., Persell, S. D., Rasmussen-Torvik, L. J., Pacheco, J. A., Chisholm, R. L., Christensen, C., Herr, T. M., Wehbe, F. H. & Starren, J. B., Feb 19 2019, In : Journal of the American Medical Informatics Association. 26, 4, p. 306-310 5 p.

Research output: Contribution to journalArticle

2 Scopus citations

Characterizing Design Patterns of EHR-Driven Phenotype Extraction Algorithms

Zhong, Y., Rasmussen, L., Deng, Y., Pacheco, J., Smith, M. E., Starren, J. B., Wei, W. Q., Speltz, P., Denny, J., Walton, N., Hripcsak, G., Chute, C. G. & Luo, Y., Jan 21 2019, Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018. Schmidt, H., Griol, D., Wang, H., Baumbach, J., Zheng, H., Callejas, Z., Hu, X., Dickerson, J. & Zhang, L. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 1143-1146 4 p. 8621240. (Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Harmonizing Clinical Sequencing and Interpretation for the eMERGE III Network

the eMERGE Consortium, Sep 5 2019, In : American journal of human genetics. 105, 3, p. 588-605 18 p.

Research output: Contribution to journalArticle

2 Scopus citations

Pharmacogenomic clinical decision support design and multi-site process outcomes analysis in the eMERGE Network

Herr, T. M., Peterson, J. F., Rasmussen, L. V., Caraballo, P. J., Peissig, P. L. & Starren, J. B., Jan 1 2019, In : Journal of the American Medical Informatics Association. 26, 2, p. 143-148 6 p.

Research output: Contribution to journalArticle

3 Scopus citations

Rich text formatted EHR narratives: A hidden and ignored trove

Zeng, Z., Zhao, Y., Sun, M., Vo, A. H., Starren, J. B. & Luo, Y., Aug 21 2019, MEDINFO 2019: Health and Wellbeing e-Networks for All - Proceedings of the 17th World Congress on Medical and Health Informatics. Seroussi, B., Ohno-Machado, L., Ohno-Machado, L. & Seroussi, B. (eds.). IOS Press, p. 472-476 5 p. (Studies in Health Technology and Informatics; vol. 264).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2018

Segment convolutional neural networks (Seg-CNNs) for classifying relations in clinical notes

Luo, Y., Cheng, Y., Uzuner, Ö., Szolovits, P. & Starren, J. B., Jan 1 2018, In : Journal of the American Medical Informatics Association. 25, 1, p. 93-98 6 p., ocx090.

Research output: Contribution to journalArticle

19 Scopus citations
2017

Natural Language Processing for EHR-Based Pharmacovigilance: A Structured Review

Luo, Y., Thompson, W. K., Herr, T. M., Zeng, Z., Berendsen, M. A., Jonnalagadda, S. R., Carson, M. B. & Starren, J. B., Nov 1 2017, In : Drug Safety. 40, 11, p. 1075-1089 15 p.

Research output: Contribution to journalReview article

35 Scopus citations
2016

Core informatics competencies for clinical and translational scientists: What do our customers and collaborators need to know?

Valenta, A. L., Meagher, E. A., Tachinardi, U. & Starren, J. B., Jan 1 2016, In : Journal of the American Medical Informatics Association. 23, 4, p. 835-839 5 p.

Research output: Contribution to journalArticle

3 Scopus citations

Epistatic Gene-Based Interaction Analyses for Glaucoma in eMERGE and NEIGHBOR Consortium

eMERGE Network & NEIGHBOR Consortium, Sep 2016, In : PLoS genetics. 12, 9, e1006186.

Research output: Contribution to journalArticle

17 Scopus citations

Practical considerations for implementing genomic information resources: Experiences from eMERGE and CSER: Experiences from eMERGE and CSER

Rasmussen, L. V., Overby, C. L., Connolly, J., Chute, C. G., Denny, J. C., Freimuth, R. R., Hartzler, A. L., Holm, I. A., Manzi, S., Pathak, J., Peissig, P. L., Smith, M. E., Williams, M. S., Shirts, B. H., Stoffel, E. M., Tarczy-Hornoch, P., Rohrer Vitek, C. R., Wolf, W. A. & Starren, J. B., Jan 1 2016, In : Applied Clinical Informatics. 7, 3, p. 870-882 13 p.

Research output: Contribution to journalArticle

14 Scopus citations
2015

CSER and eMERGE: Current and potential state of the display of genetic information in the electronic health record

Shirts, B. H., Salama, J. S., Aronson, S. J., Chung, W. K., Gray, S. W., Hindorff, L. A., Jarvik, G. P., Plon, S. E., Stoffel, E. M., Tarczy-Hornoch, P. Z., Van Allen, E. M., Weck, K. E., Chute, C. G., Freimuth, R. R., Grundmeier, R. W., Hartzler, A. L., Li, R., Peissig, P. L., Peterson, J. F., Rasmussen, L. V. & 3 others, Starren, J. B., Williams, M. S. & Overby, C. L., Jan 1 2015, In : Journal of the American Medical Informatics Association. 22, 6, p. 1231-1242 12 p.

Research output: Contribution to journalArticle

46 Scopus citations
2014

A Template for Authoring and Adapting Genomic Medicine Content in the eMERGE Infobutton Project

Overby, C. L., Rasmussen, L. V., Hartzler, A., Connolly, J. J., Peterson, J. F., Hedberg, R. M. E., Freimuth, R. R., Shirts, B. H., Denny, J. C., Larson, E. B., Chute, C. G., Jarvik, G. P., Ralston, J. D., Shuldiner, A. R., Starren, J. B., Kullo, I. J., Tarczy-Hornoch, P. & Williams, M. S., Jan 1 2014, In : AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium. 2014, p. 944-953 10 p.

Research output: Contribution to journalArticle

7 Scopus citations

Design patterns for the development of electronic health record-driven phenotype extraction algorithms

Rasmussen, L. V., Thompson, W. K., Pacheco, J. A., Kho, A. N., Carrell, D. S., Pathak, J., Peissig, P. L., Tromp, G., Denny, J. C. & Starren, J. B., Jan 1 2014, In : Journal of Biomedical Informatics. 51, p. 280-286 7 p.

Research output: Contribution to journalArticle

22 Scopus citations

Meta-Analysis of Genome-Wide Association Studies in African Americans Provides Insights into the Genetic Architecture of Type 2 Diabetes

Ng, M. C. Y., Shriner, D., Chen, B. H., Li, J., Chen, W. M., Guo, X., Liu, J., Bielinski, S. J., Yanek, L. R., Nalls, M. A., Comeau, M. E., Rasmussen-Torvik, L. J., Jensen, R. A., Evans, D. S., Sun, Y. V., An, P., Patel, S. R., Lu, Y., Long, J., Armstrong, L. L. & 32 others, Wagenknecht, L., Yang, L., Snively, B. M., Palmer, N. D., Mudgal, P., Langefeld, C. D., Keene, K. L., Freedman, B. I., Mychaleckyj, J. C., Nayak, U., Raffel, L. J., Goodarzi, M. O., Chen, Y. D. I., Taylor, H. A., Correa, A., Sims, M., Couper, D., Pankow, J. S., Boerwinkle, E., Adeyemo, A., Doumatey, A., Hayes, M. G., Starren, J., Chisholm, R. L., Greenland, P., Kho, A. N., Lowe, W. L., Smith, M. E., Thompson, W. K., Cornelis, M., The MAGIC investigators & The GIANT consortium, Aug 7 2014, In : PLoS genetics. 10, 8, e1004517.

Research output: Contribution to journalArticle

103 Scopus citations

PGS: A tool for association study of high-dimensional microRNA expression data with repeated measures

Zheng, Y., Fei, Z., Zhang, W., Starren, J. B., Liu, L., Baccarelli, A. A., Li, Y. & Hou, L., Apr 2 2014, In : Bioinformatics. 30, 19, p. 2802-2807 6 p.

Research output: Contribution to journalArticle

5 Scopus citations

Telehealth

Starren, J. B., Nesbitt, T. S. & Chiang, M. F., Jan 1 2014, Biomedical Informatics: Computer Applications in Health Care and Biomedicine: Fourth Edition. Springer London, p. 541-560 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

4 Scopus citations
2013

Crossing the omic chasm: A time for omic ancillary systems

Starren, J. B., Williams, M. S. & Bottinger, E. P., Mar 27 2013, In : JAMA - Journal of the American Medical Association. 309, 12, p. 1237-1238 2 p.

Research output: Contribution to journalShort survey

51 Scopus citations

Opportunities for genomic clinical decision support interventions

Overby, C. L., Kohane, I., Kannry, J. L., Williams, M. S., Starren, J. B., Bottinger, E., Gottesman, O., Denny, J. C., Weng, C., Tarczy-Hornoch, P. & Hripcsak, G., Oct 1 2013, In : Genetics in Medicine. 15, 10, p. 817-823 7 p.

Research output: Contribution to journalArticle

41 Scopus citations

Practical challenges in integrating genomic data into the electronic health record

Kho, A. N., Rasmussen, L. V., Connolly, J. J., Peissig, P. L., Starren, J., Hakonarson, H. & Hayes, M. G., Oct 1 2013, In : Genetics in Medicine. 15, 10, p. 772-778 7 p.

Research output: Contribution to journalReview article

42 Scopus citations
2012

Development of an optical character recognition pipeline for handwritten form fields from an electronic health record

Rasmussen, L. V., Peissig, P. L., McCarty, C. A. & Starren, J. B., Jun 1 2012, In : Journal of the American Medical Informatics Association. 19, E1, p. e90-e95

Research output: Contribution to journalArticle

13 Scopus citations

Importance of multi-modal approaches to effectively identify cataract cases from electronic health records

Peissig, P. L., Rasmussen, L. V., Berg, R. L., Linneman, J. G., McCarty, C. A., Waudby, C., Chen, L., Denny, J. C., Wilke, R. A., Pathak, J., Carrell, D., Kho, A. N. & Starren, J. B., Mar 1 2012, In : Journal of the American Medical Informatics Association. 19, 2, p. 225-234 10 p.

Research output: Contribution to journalArticle

66 Scopus citations

Proof of concept for the role of glycemic control in the early detection of infections in diabetics

Botsis, T., Lai, A. M., Hripcsak, G., Palmas, W., Starren, J. B. & Hartvigsen, G., Mar 1 2012, In : Health informatics journal. 18, 1, p. 26-35 10 p.

Research output: Contribution to journalArticle

2 Scopus citations
2011

Anticipating and addressing the unintended consequences of health IT and policy: A report from the AMIA 2009 Health Policy Meeting

Bloomrosen, M., Starren, J., Lorenzi, N. M., Ash, J. S., Patel, V. L. & Shortliffe, E. H., Jan 1 2011, In : Journal of the American Medical Informatics Association. 18, 1, p. 82-90 9 p.

Research output: Contribution to journalArticle

90 Scopus citations

Implementation of workflow engine technology to deliver basic clinical decision support functionality

Huser, V., Rasmussen, L. V., Oberg, R. & Starren, J. B., Apr 12 2011, In : BMC Medical Research Methodology. 11, 43.

Research output: Contribution to journalArticle

17 Scopus citations

Medical providers' dental information needs: A baseline survey

Acharya, A., Mahnke, A., Chyou, P. H., Rottscheit, C. & Starren, J. B., Jan 1 2011, User Centred Networked Health Care - Proceedings of MIE 2011. IOS Press, p. 387-391 5 p. (Studies in Health Technology and Informatics; vol. 169).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations

The role of nonverbal and verbal communication in a multimedia informed consent process

Plasek, J. M., Pieczkiewicz, D. S., Mahnke, A. N., McCarty, C. A., Starren, J. B. & Westra, B. L., Dec 1 2011, In : Applied Clinical Informatics. 2, 2, p. 240-249 10 p.

Research output: Contribution to journalArticle

2 Scopus citations
2010

Diagnostic performance of a telemedicine system for ophthalmology: advantages in accuracy and speed compared to standard care

Chiang, M. F., Wang, L., Kim, D., Scott, K., Richter, G., Kane, S., Flynn, J. & Starren, J., Jan 1 2010, In : AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium. 2010, p. 111-115 5 p.

Research output: Contribution to journalArticle

9 Scopus citations

Improving clinical trial participant tracking tools using knowledge-anchored design methodologies

Payne, P. R. O., Embi, P. J., Johnson, S. B., Mendonca, E. & Starren, J., Dec 1 2010, In : Applied Clinical Informatics. 1, 2, p. 177-196 20 p.

Research output: Contribution to journalArticle

4 Scopus citations

Medicare payments, healthcare service use, and telemedicine implementation costs in a randomized trial comparing telemedicine case management with usual care in medically underserved participants with diabetes mellitus (IDEATel)

Palmas, W., Shea, S., Starren, J., Teresi, J. A., Ganz, M. L., Burton, T. M., Pashos, C. L., Blustein, J., Field, L., Morin, P. C., Izquierdo, R. E., Silver, S., Eimicke, J. P., Lantigua, R. A. & Weinstock, R. S., Mar 1 2010, In : Journal of the American Medical Informatics Association. 17, 2, p. 196-202 7 p.

Research output: Contribution to journalArticle

28 Scopus citations

Parental perceptions toward digital imaging and telemedicine for retinopathy of prematurity management

Lee, J. Y., Du, Y. E., Coki, O., Flynn, J. T., Starren, J. & Chiang, M. F., Jan 1 2010, In : Graefe's Archive for Clinical and Experimental Ophthalmology. 248, 1, p. 141-147 7 p.

Research output: Contribution to journalArticle

15 Scopus citations

Quantification of the clinical modifiers impacting high-density lipoprotein cholesterol in the community: Personalized medicine research project

Wilke, R. A., Berg, R. L., Linneman, J. G., Peissig, P., Starren, J., Ritchie, M. D. & McCarty, C. A., Mar 1 2010, In : Preventive Cardiology. 13, 2, p. 63-68 6 p.

Research output: Contribution to journalArticle

11 Scopus citations

Telemedical diagnosis of retinopathy of prematurity: Accuracy of expert versus non-expert graders

Williams, S. L., Wang, L., Kane, S. A., Lee, T. C., Weissgold, D. J., Berrocal, A. M., Rabinowitz, D., Starren, J., Flynn, J. T. & Chiang, M. F., Mar 1 2010, In : British Journal of Ophthalmology. 94, 3, p. 351-356 6 p.

Research output: Contribution to journalArticle

33 Scopus citations

Use of three computer training methods in elderly underserved rural patients enrolled in a diabetes telemedicine program

Robinson, K. S., Morin, P. C., Shupe, J. A. C., Izquierdo, R., Ploutz-Snyder, R., Meyer, S., Teresi, J. A., Starren, J., Shea, S. & Weinstock, R. S., May 1 2010, In : CIN - Computers Informatics Nursing. 28, 3, p. 172-177 6 p.

Research output: Contribution to journalArticle

3 Scopus citations
2009

Ad-hoc association of pre-determined ZigBee devices

Seeling, P. & Starren, J. B., Dec 31 2009, 2009 6th Annual International Conference on Mobile and Ubiquitous Systems: Networking and Services, MobiQuitous 2009. 5326384

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations

A Randomized Trial Comparing Telemedicine Case Management with Usual Care in Older, Ethnically Diverse, Medically Underserved Patients with Diabetes Mellitus: 5 Year Results of the IDEATel Study

Shea, S., Weinstock, R. S., Teresi, J. A., Palmas, W., Starren, J., Cimino, J. J., Lai, A. M., Field, L., Morin, P. C., Goland, R., Izquierdo, R. E., Ebner, S., Silver, S., Petkova, E., Kong, J. & Eimicke, J. P., Jul 1 2009, In : Journal of the American Medical Informatics Association. 16, 4, p. 446-456 11 p.

Research output: Contribution to journalArticle

205 Scopus citations

Evaluation of a remote training approach for teaching seniors to use a telehealth system

Lai, A. M., Kaufman, D. R., Starren, J. & Shea, S., Nov 1 2009, In : International Journal of Medical Informatics. 78, 11, p. 732-744 13 p.

Research output: Contribution to journalArticle

23 Scopus citations

Image analysis for retinopathy of prematurity diagnosis

Chiang, M. F., Gelman, R., Martinez-Perez, M. E., Du, Y. E., Casper, D. S., Currie, L. M., Shah, P. D., Starren, J. & Flynn, J. T., Oct 1 2009, In : Journal of AAPOS. 13, 5, p. 438-445 8 p.

Research output: Contribution to journalArticle

29 Scopus citations

Speed of Telemedicine vs Ophthalmoscopy for Retinopathy of Prematurity Diagnosis

Richter, G. M., Sun, G., Lee, T. C., Chan, R. V. P., Flynn, J. T., Starren, J. & Chiang, M. F., Jan 1 2009, In : American journal of ophthalmology. 148, 1

Research output: Contribution to journalArticle

29 Scopus citations

Synergies and Distinctions between Computational Disciplines in Biomedical Research: Perspective from the Clinical and Translational Science Award Programs

Bernstam, E. V., Hersh, W. R., Johnson, S. B., Chute, C. G., Nguyen, H., Sim, I., Nahm, M., Weiner, M. G., Miller, P., DiLaura, R. P., Overcash, M., Lehmann, H. P., Eichmann, D., Athey, B. D., Scheuermann, R. H., Anderson, N., Starren, J., Harris, P. A., Smith, J. W., Barbour, E. & 4 others, Silverstein, J. C., Krusch, D. A., Nagarajan, R. & Becich, M. J., Jul 2009, In : Academic Medicine. 84, 7, p. 964-970 7 p.

Research output: Contribution to journalReview article

25 Scopus citations

Telemedicine for Retinopathy of Prematurity Diagnosis: Evaluation and Challenges

Richter, G. M., Williams, S. L., Starren, J., Flynn, J. T. & Chiang, M. F., Nov 1 2009, In : Survey of Ophthalmology. 54, 6, p. 671-685 15 p.

Research output: Contribution to journalReview article

70 Scopus citations

The effects of redesigning the IDEATel architecture on glucose uploads

Hilliman, C. A., Cimino, J. J., Lai, A. M., Kaufman, D. R., Starren, J. B. & Shea, S., Apr 1 2009, In : Telemedicine and e-Health. 15, 3, p. 248-254 7 p.

Research output: Contribution to journalArticle

2 Scopus citations

Understanding workflow in telehealth video visits: Observations from the IDEATel project

Kaufman, D. R., Pevzner, J., Rodriguez, M., Cimino, J. J., Ebner, S., Fields, L., Moreno, V., McGuiness, C., Weinstock, R. S., Shea, S. & Starren, J., Aug 1 2009, In : Journal of Biomedical Informatics. 42, 4, p. 581-592 12 p.

Research output: Contribution to journalArticle

15 Scopus citations
2008

Evaluation of the google search appliance for patient cohort discovery.

Oberg, R., Rasmussen, L., Melski, J., Peissig, P. & Starren, J., Jan 1 2008, In : AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium. 1 p.

Research output: Contribution to journalArticle

4 Scopus citations

Frequency of serum creatinine changes in the absence of iodinated contrast material: Implications for studies of contrast nephrotoxicity

Newhouse, J. H., Kho, D., Rao, Q. A. & Starren, J., Aug 15 2008, In : American Journal of Roentgenology. 191, 2, p. 376-382 7 p.

Research output: Contribution to journalArticle

229 Scopus citations

Improved techniques for quantitatively comparing data visualizations.

Pieczkiewicz, D. S., Rasmussen, L. V. & Starren, J. B., Dec 1 2008, In : AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium. 1 p.

Research output: Contribution to journalArticle

Participatory design with children in the development of a support system for patient-centered care in pediatric oncology

Ruland, C. M., Starren, J. & Vatne, T. M., Aug 1 2008, In : Journal of Biomedical Informatics. 41, 4, p. 624-635 12 p.

Research output: Contribution to journalArticle

81 Scopus citations

Retinopathy of Prematurity Management using Single-Image vs Multiple-Image Telemedicine Examinations

Lajoie, A., Koreen, S., Wang, L., Kane, S. A., Lee, T. C., Weissgold, D. J., Berrocal, A. M., Du, Y. E., Coki, O., Flynn, J. T., Starren, J. & Chiang, M. F., Aug 2008, In : American journal of ophthalmology. 146, 2, p. 298-309.e2

Research output: Contribution to journalArticle

14 Scopus citations

Telemedical Diagnosis of Retinopathy of Prematurity. Intraphysician Agreement between Ophthalmoscopic Examination and Image-Based Interpretation

Scott, K. E., Kim, D. Y., Wang, L., Kane, S. A., Coki, O., Starren, J., Flynn, J. T. & Chiang, M. F., Jul 2008, In : Ophthalmology. 115, 7, p. 1222-1228.e3

Research output: Contribution to journalArticle

73 Scopus citations