Lizhen Shi

Calculated based on number of publications stored in Pure and citations from Scopus
Calculated based on number of publications stored in Pure and citations from Scopus
Calculated based on number of publications stored in Pure and citations from Scopus
20152022

Research activity per year

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  • Critical Assessment of Metagenome Interpretation: the second round of challenges

    Meyer, F., Fritz, A., Deng, Z. L., Koslicki, D., Lesker, T. R., Gurevich, A., Robertson, G., Alser, M., Antipov, D., Beghini, F., Bertrand, D., Brito, J. J., Brown, C. T., Buchmann, J., Buluç, A., Chen, B., Chikhi, R., Clausen, P. T. L. C., Cristian, A. & Dabrowski, P. W. & 83 others, Darling, A. E., Egan, R., Eskin, E., Georganas, E., Goltsman, E., Gray, M. A., Hansen, L. H., Hofmeyr, S., Huang, P., Irber, L., Jia, H., Jørgensen, T. S., Kieser, S. D., Klemetsen, T., Kola, A., Kolmogorov, M., Korobeynikov, A., Kwan, J., LaPierre, N., Lemaitre, C., Li, C., Limasset, A., Malcher-Miranda, F., Mangul, S., Marcelino, V. R., Marchet, C., Marijon, P., Meleshko, D., Mende, D. R., Milanese, A., Nagarajan, N., Nissen, J., Nurk, S., Oliker, L., Paoli, L., Peterlongo, P., Piro, V. C., Porter, J. S., Rasmussen, S., Rees, E. R., Reinert, K., Renard, B., Robertsen, E. M., Rosen, G. L., Ruscheweyh, H. J., Sarwal, V., Segata, N., Seiler, E., Shi, L., Sun, F., Sunagawa, S., Sørensen, S. J., Thomas, A., Tong, C., Trajkovski, M., Tremblay, J., Uritskiy, G., Vicedomini, R., Wang, Z., Wang, Z., Wang, Z., Warren, A., Willassen, N. P., Yelick, K., You, R., Zeller, G., Zhao, Z., Zhu, S., Zhu, J., Garrido-Oter, R., Gastmeier, P., Hacquard, S., Häußler, S., Khaledi, A., Maechler, F., Mesny, F., Radutoiu, S., Schulze-Lefert, P., Smit, N., Strowig, T., Bremges, A., Sczyrba, A. & McHardy, A. C., Apr 2022, In: Nature Methods. 19, 4, p. 429-440 12 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    129 Scopus citations
  • LSHvec: A vector representation of DNA sequences using locality sensitive hashing and FastText word embeddings

    Shi, L. & Chen, B., Jan 18 2021, Proceedings of the 12th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics, BCB 2021. Association for Computing Machinery, Inc, (Proceedings of the 12th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics, BCB 2021).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    5 Scopus citations
  • Deconvolute individual genomes from metagenome sequences through short read clustering

    Li, K., Lu, Y., Deng, L., Wang, L., Shi, L. & Wang, Z., 2020, In: PeerJ. 2020, 4, 8966.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    5 Scopus citations
  • Computational strategies for scalable genomics analysis

    Shi, L. & Wang, Z., Dec 2019, In: Genes. 10, 12, 1017.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    11 Scopus citations
  • SpaRC: Scalable sequence clustering using Apache Spark

    Shi, L., Meng, X., Tseng, E., Mascagni, M. & Wang, Z., Mar 1 2019, In: Bioinformatics. 35, 5, p. 760-768 9 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    16 Scopus citations