No photo of Lizhen Shi

View Scopus Profile

Lizhen Shi

Calculated based on number of publications stored in Pure and citations from Scopus
Calculated based on number of publications stored in Pure and citations from Scopus
Calculated based on number of publications stored in Pure and citations from Scopus
20152022

Research activity per year

  • 6 Article
  • 2 Conference contribution

Search results

  • 2022

    Critical Assessment of Metagenome Interpretation: the second round of challenges

    Meyer, F., Fritz, A., Deng, Z. L., Koslicki, D., Lesker, T. R., Gurevich, A., Robertson, G., Alser, M., Antipov, D., Beghini, F., Bertrand, D., Brito, J. J., Brown, C. T., Buchmann, J., Buluç, A., Chen, B., Chikhi, R., Clausen, P. T. L. C., Cristian, A. & Dabrowski, P. W. & 83 others, Darling, A. E., Egan, R., Eskin, E., Georganas, E., Goltsman, E., Gray, M. A., Hansen, L. H., Hofmeyr, S., Huang, P., Irber, L., Jia, H., Jørgensen, T. S., Kieser, S. D., Klemetsen, T., Kola, A., Kolmogorov, M., Korobeynikov, A., Kwan, J., LaPierre, N., Lemaitre, C., Li, C., Limasset, A., Malcher-Miranda, F., Mangul, S., Marcelino, V. R., Marchet, C., Marijon, P., Meleshko, D., Mende, D. R., Milanese, A., Nagarajan, N., Nissen, J., Nurk, S., Oliker, L., Paoli, L., Peterlongo, P., Piro, V. C., Porter, J. S., Rasmussen, S., Rees, E. R., Reinert, K., Renard, B., Robertsen, E. M., Rosen, G. L., Ruscheweyh, H. J., Sarwal, V., Segata, N., Seiler, E., Shi, L., Sun, F., Sunagawa, S., Sørensen, S. J., Thomas, A., Tong, C., Trajkovski, M., Tremblay, J., Uritskiy, G., Vicedomini, R., Wang, Z., Wang, Z., Wang, Z., Warren, A., Willassen, N. P., Yelick, K., You, R., Zeller, G., Zhao, Z., Zhu, S., Zhu, J., Garrido-Oter, R., Gastmeier, P., Hacquard, S., Häußler, S., Khaledi, A., Maechler, F., Mesny, F., Radutoiu, S., Schulze-Lefert, P., Smit, N., Strowig, T., Bremges, A., Sczyrba, A. & McHardy, A. C., Apr 2022, In: Nature Methods. 19, 4, p. 429-440 12 p.

    Research output: Contribution to journal › Article › peer-review

    167 Scopus citations
  • 2021

    LSHvec: A vector representation of DNA sequences using locality sensitive hashing and FastText word embeddings

    Shi, L. & Chen, B., Jan 18 2021, Proceedings of the 12th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics, BCB 2021. Association for Computing Machinery, Inc, (Proceedings of the 12th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics, BCB 2021).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    7 Scopus citations
  • 2020

    Deconvolute individual genomes from metagenome sequences through short read clustering

    Li, K., Lu, Y., Deng, L., Wang, L., Shi, L. & Wang, Z., 2020, In: PeerJ. 2020, 4, 8966.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    5 Scopus citations
  • 2019

    Computational strategies for scalable genomics analysis

    Shi, L. & Wang, Z., Dec 2019, In: Genes. 10, 12, 1017.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    11 Scopus citations

  • SpaRC: Scalable sequence clustering using Apache Spark

    Shi, L., Meng, X., Tseng, E., Mascagni, M. & Wang, Z., Mar 1 2019, In: Bioinformatics. 35, 5, p. 760-768 9 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    18 Scopus citations
  • 2017

    A case study of tuning MapReduce for efficient Bioinformatics in the cloud

    Shi, L., Wang, Z., Yu, W. & Meng, X., Jan 1 2017, In: Parallel Computing. 61, p. 83-95 13 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    14 Scopus citations

  • Construction and optimization of a large gene coexpression network in maize using RNA-seq data

    Huang, J., Vendramin, S., Shi, L. & McGinnis, K. M., Sep 2017, In: Plant Physiology. 175, 1, p. 568-583 16 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    42 Scopus citations
  • 2015

    Performance evaluation and tuning of BioPig for genomic analysis

    Shi, L., Wang, Z., Yu, W. & Meng, X., Nov 15 2015, Proceedings of DISCS 2015: The 2015 International Workshop on Data-Intensive Scalable Computing Systems - Held in conjunction with SC 2015: The International Conference for High Performance Computing, Networking, Storage and Analysis. Association for Computing Machinery, Inc, 9. (Proceedings of DISCS 2015: The 2015 International Workshop on Data-Intensive Scalable Computing Systems - Held in conjunction with SC 2015: The International Conference for High Performance Computing, Networking, Storage and Analysis).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    2 Scopus citations