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Lizhen Shi

Calculated based on number of publications stored in Pure and citations from Scopus
Calculated based on number of publications stored in Pure and citations from Scopus
Calculated based on number of publications stored in Pure and citations from Scopus
20152022

Research activity per year

  • 6 Article
  • 2 Conference contribution
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  • 2022

    Critical Assessment of Metagenome Interpretation: the second round of challenges

    Meyer, F., Fritz, A., Deng, Z. L., Koslicki, D., Lesker, T. R., Gurevich, A., Robertson, G., Alser, M., Antipov, D., Beghini, F., Bertrand, D., Brito, J. J., Brown, C. T., Buchmann, J., Buluç, A., Chen, B., Chikhi, R., Clausen, P. T. L. C., Cristian, A. & Dabrowski, P. W. & 83 others, Darling, A. E., Egan, R., Eskin, E., Georganas, E., Goltsman, E., Gray, M. A., Hansen, L. H., Hofmeyr, S., Huang, P., Irber, L., Jia, H., Jørgensen, T. S., Kieser, S. D., Klemetsen, T., Kola, A., Kolmogorov, M., Korobeynikov, A., Kwan, J., LaPierre, N., Lemaitre, C., Li, C., Limasset, A., Malcher-Miranda, F., Mangul, S., Marcelino, V. R., Marchet, C., Marijon, P., Meleshko, D., Mende, D. R., Milanese, A., Nagarajan, N., Nissen, J., Nurk, S., Oliker, L., Paoli, L., Peterlongo, P., Piro, V. C., Porter, J. S., Rasmussen, S., Rees, E. R., Reinert, K., Renard, B., Robertsen, E. M., Rosen, G. L., Ruscheweyh, H. J., Sarwal, V., Segata, N., Seiler, E., Shi, L., Sun, F., Sunagawa, S., Sørensen, S. J., Thomas, A., Tong, C., Trajkovski, M., Tremblay, J., Uritskiy, G., Vicedomini, R., Wang, Z., Wang, Z., Wang, Z., Warren, A., Willassen, N. P., Yelick, K., You, R., Zeller, G., Zhao, Z., Zhu, S., Zhu, J., Garrido-Oter, R., Gastmeier, P., Hacquard, S., Häußler, S., Khaledi, A., Maechler, F., Mesny, F., Radutoiu, S., Schulze-Lefert, P., Smit, N., Strowig, T., Bremges, A., Sczyrba, A. & McHardy, A. C., Apr 2022, In: Nature Methods. 19, 4, p. 429-440 12 p.

    Research output: Contribution to journal › Article › peer-review

    170 Scopus citations
  • 2020

    Deconvolute individual genomes from metagenome sequences through short read clustering

    Li, K., Lu, Y., Deng, L., Wang, L., Shi, L. & Wang, Z., 2020, In: PeerJ. 2020, 4, 8966.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    5 Scopus citations
  • 2019

    Computational strategies for scalable genomics analysis

    Shi, L. & Wang, Z., Dec 2019, In: Genes. 10, 12, 1017.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    11 Scopus citations

  • SpaRC: Scalable sequence clustering using Apache Spark

    Shi, L., Meng, X., Tseng, E., Mascagni, M. & Wang, Z., Mar 1 2019, In: Bioinformatics. 35, 5, p. 760-768 9 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    18 Scopus citations
  • 2017

    A case study of tuning MapReduce for efficient Bioinformatics in the cloud

    Shi, L., Wang, Z., Yu, W. & Meng, X., Jan 1 2017, In: Parallel Computing. 61, p. 83-95 13 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    14 Scopus citations

  • Construction and optimization of a large gene coexpression network in maize using RNA-seq data

    Huang, J., Vendramin, S., Shi, L. & McGinnis, K. M., Sep 2017, In: Plant Physiology. 175, 1, p. 568-583 16 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    42 Scopus citations