Grants per year
Personal profile
Research Interests
Professor Amaral conducts and directs research that provides insight into the emergence, evolution, and stability of complex social and biological systems. His research aims to address some of the most pressing challenges facing humanity, including the mitigation of errors in healthcare settings, the characterization of the conditions fostering innovation and creativity, or the growth limits imposed by sustainability.
Education/Academic qualification
Physics, PhD, Boston University
… → 1996
Physics, MS, University of Lisbon
Physics, BS, University of Lisbon
Research interests keywords
- Complex networks in nature
- study of innovation and creativity
- system-level modeling of biological processes
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Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
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Successful Clinical Response In Pneumonia Therapy (SCRIPT) Systems Biology Center
Wunderink, R. G., Wunderink, R. G., Abdala-Valencia, H., Budinger, G. S., Budinger, G. S., Etemadi, M., Hartmann, E. M., Hultquist, J. F., Lorenzo Redondo, R., Luo, Y., Misharin, A., Morales-Nebreda, L., Ozer, E. A., Pickens, C. I., Qi, C., Scholtens, D. M., Singer, B., Stoeger, T., Swaminathan, S., Walter, J. M., Wunderink, R. G., Amaral, L. A. N., Budinger, G. S., Hartmann, E. M., Hauser, A. R., Misharin, A., Ozer, E. A., Pickens, C. I., Qi, C., Singer, B., Starren, J., Stoeger, T., Walter, J. M. & Wunderink, R. G.
National Institute of Allergy and Infectious Diseases
1/1/23 → 12/31/27
Project: Research project
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HDR DSC: Collaborative Research: The Metropolitan Chicago Data Science Corps (MCDC): Learning from Data to Support Communities
van der Lee, S., van der Lee, S., Birkett, M. A., Birkett, M. A., Goldberg, B. B., Goldberg, B. B., Schanzenbach, D. W., Schanzenbach, D. W., Amaral, L. A. N., Amaral, L. A. N., Amato, K. R., Amato, K. R., Blomberg Stathopoulos, A. I., Blomberg Stathopoulos, A. I., Brown, C. H., Brown, C. H., Drane, D. L., Drane, D. L., Dunn, J. B., Dunn, J. B., Gray, K. A., Gray, K. A., Hambleton, J. P., Hambleton, J. P., Hammond, K. J., Hammond, K. J., Hedges, L. V., Hedges, L. V., Horton, D. E., Horton, D. E., Kuyper, A. M., Kuyper, A. M., Linna Jr., D. W., Linna Jr., D. W., Miller, W. M., Miller, W. M., Packman, A., Packman, A., Pah, A. R., Pah, A. R., Papachristos, A. V., Papachristos, A. V., Phillips II, G., Phillips II, G., Rogers, J. M., Rogers, J. M., Van Wart, S. J., Van Wart, S. J., Voigt, R., Voigt, R., Wells, G., Wells, G., Youn, H. & Youn, H.
9/1/21 → 8/31/24
Project: Research project
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A1: Systemic Content Analysis of Litigation Events (SCALES) Open Knowledge Network to Enable Transparency and Access to Court Records
Amaral, L. A. N., Pah, A. R., Schwartz, D. L., Clopton, Z. D., Delaney, E. F., DiCola, P. C., Gowder, P. A., Hagan, J. L., Hammond, K. J., Loeb, N. & Sanga, S.
9/1/20 → 8/31/24
Project: Research project
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Northwestern University Quantitative Biology Center (NUQuB)
Carthew, R. W., Allada, R., Amaral, L. A. N., Andersen, E. C., Kath, W. L., Allada, R., Amaral, L. A. N., Andersen, E. C., Auffinger, A., Bagheri, N., Braun, R. I., LaBonne, C., Mangan, N. M., Mani, M., Wang, J. & Wang, X.
7/1/18 → 6/30/24
Project: Research project
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Northwestern University Quantitative Biology Center (NUQuB)
Carthew, R. W., Allada, R., Amaral, L. A. N., Andersen, E. C., Auffinger, A., Bagheri, N., Braun, R. I., Kath, W. L., LaBonne, C., Mangan, N. M., Mani, M., Wang, J., Wang, X. & Goldberg, B. B.
7/1/18 → 6/30/24
Project: Research project
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A new approach for extracting information from protein dynamics
Liu, J., Amaral, L. A. N. & Keten, S., Feb 2023, In: Proteins: Structure, Function and Bioinformatics. 91, 2, p. 183-195 13 p.Research output: Contribution to journal › Article › peer-review
Open Access -
Ratiometric sensing of Pnt and Yan transcription factor levels confers ultrasensitivity to photoreceptor fate transitions in Drosophila
Bernasek, S. M., Hur, S. S. J., Peláez-Restrepo, N., Lachance, J. F. B., Bakker, R., Navarro, H. T., Sanchez-Luege, N., Amaral, L. A. N., Bagheri, N., Rebay, I. & Carthew, R. W., Apr 2023, In: Development (Cambridge). 150, 8, dev201467.Research output: Contribution to journal › Article › peer-review
Open Access -
A cautionary tale from the machine scientist
Amaral, L. A. N., May 2022, In: Nature Machine Intelligence. 4, 5, p. 416-417 2 p.Research output: Contribution to journal › Comment/debate › peer-review
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Aging is associated with a systemic length-associated transcriptome imbalance
Stoeger, T., Grant, R. A., McQuattie-Pimentel, A. C., Anekalla, K. R., Liu, S. S., Tejedor-Navarro, H., Singer, B. D., Abdala-Valencia, H., Schwake, M., Tetreault, M. P., Perlman, H., Balch, W. E., Chandel, N. S., Ridge, K. M., Sznajder, J. I., Morimoto, R. I., Misharin, A. V., Budinger, G. R. S. & Nunes Amaral, L. A., Dec 2022, In: Nature Aging. 2, 12, p. 1191-1206 16 p.Research output: Contribution to journal › Article › peer-review
Open Access14 Scopus citations -
Forecasting the evolution of fast-changing transportation networks using machine learning
Lei, W., Alves, L. G. A. & Amaral, L. A. N., Dec 2022, In: Nature communications. 13, 1, 4252.Research output: Contribution to journal › Article › peer-review
Open Access4 Scopus citations
Datasets
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Appendix B. Confidence intervals for compartment properties.
Guimerà, R. (Contributor), Stouffer, D. B. (Contributor), Sales-Pardo, M. (Contributor), Leicht, E. A. (Contributor), Newman, M. E. J. (Contributor) & Amaral, L. A. N. (Contributor), wiley, 2016
DOI: 10.6084/m9.figshare.3549897, https://wiley.figshare.com/articles/dataset/Appendix_B_Confidence_intervals_for_compartment_properties_/3549897
Dataset
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Appendix D. A comparison of the cumulative distributions of the number of predators and number of links for species in the 15 community food webs investigated (empirical data) with the numerical predictions of the niche model.
Stouffer, D. B. (Contributor), Camacho, J. (Contributor), Guimerà, R. (Contributor), Ng, C. A. (Contributor) & Amaral, L. A. N. (Contributor), wiley, 2016
DOI: 10.6084/m9.figshare.3524621, https://wiley.figshare.com/articles/dataset/Appendix_D_A_comparison_of_the_cumulative_distributions_of_the_number_of_predators_and_number_of_links_for_species_in_the_15_community_food_webs_investigated_empirical_data_with_the_numerical_predictions_of_the_niche_model_/3524621
Dataset
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Appendix C. The generalized niche model.
Guimerà, R. (Contributor), Stouffer, D. B. (Contributor), Sales-Pardo, M. (Contributor), Leicht, E. A. (Contributor), Newman, M. E. J. (Contributor) & Amaral, L. A. N. (Contributor), wiley, 2016
DOI: 10.6084/m9.figshare.3549894, https://wiley.figshare.com/articles/dataset/Appendix_C_The_generalized_niche_model_/3549894
Dataset
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Appendix D. Compartment properties for the generalized niche model.
Guimerà, R. (Contributor), Stouffer, D. B. (Contributor), Sales-Pardo, M. (Contributor), Leicht, E. A. (Contributor), Newman, M. E. J. (Contributor) & Amaral, L. A. N. (Contributor), wiley, 2016
DOI: 10.6084/m9.figshare.3549891, https://wiley.figshare.com/articles/dataset/Appendix_D_Compartment_properties_for_the_generalized_niche_model_/3549891
Dataset