Matthew John Schipma

  • 493 Citations
20012023
If you made any changes in Pure, your changes will be visible here soon.

Research Output 2001 2019

  • 493 Citations
  • 29 Article
  • 1 Comment/debate
  • 1 Letter
2019
6 Citations (Scopus)

Efferocytosis Fuels Requirements of Fatty Acid Oxidation and the Electron Transport Chain to Polarize Macrophages for Tissue Repair

Zhang, S., Weinberg, S., DeBerge, M., Gainullina, A., Schipma, M. J., Kinchen, J. M., Ben-Sahra, I., Gius, D. R., Yvan-Charvet, L., Chandel, N., Schumacker, P. T. & Thorp, E. B., Feb 5 2019, In : Cell Metabolism. 29, 2, p. 443-456.e5

Research output: Contribution to journalArticle

Electron Transport
Fatty Acids
Macrophages
Interleukin-10
NAD
2018
19 Citations (Scopus)

A Carcinogen-induced mouse model recapitulates the molecular alterations of human muscle invasive bladder cancer

Fantini, D., Glaser, A. P., Rimar, K. J., Wang, Y., Schipma, M. J., Varghese, N., Rademaker, A. W., Behdad, A., Yellapa, A., Yu, Y., Sze, C. C. L., Wang, L., Zhao, Z., Crawford, S. E., Hu, D., Licht, J. D., Collings, C. K., Bartom, E. T., Theodorescu, D., Shilatifard, A. & 1 others, Meeks, J. J., Apr 1 2018, In : Oncogene. 37, 14, p. 1911-1925 15 p.

Research output: Contribution to journalArticle

Molecular Models
Urinary Bladder Neoplasms
Carcinogens
Muscles
Neoplasms
6 Citations (Scopus)

Biomaterial Scaffolds as Pre-metastatic Niche Mimics Systemically Alter the Primary Tumor and Tumor Microenvironment

Aguado, B. A., Hartfield, R. M., Bushnell, G. G., Decker, J. T., Azarin, S. M., Nanavati, D., Schipma, M. J., Rao, S. S., Oakes, R. S., Zhang, Y., Jeruss, J. S. & Shea, L. D., May 23 2018, In : Advanced Healthcare Materials. 7, 10, 1700903.

Research output: Contribution to journalArticle

Tumor Microenvironment
Biocompatible Materials
Biomaterials
Scaffolds
Tumors

Loss of pleckstrin-2 reverts lethality and vascular occlusions in JAK2 V617F -positive myeloproliferative neoplasms

Zhao, B., Mei, Y., Cao, L., Zhang, J., Sumagin, R., Yang, J., Gao, J., Schipma, M. J., Wang, Y., Thorsheim, C., Zhao, L., Stalker, T., Stein, B., Wen, Q. J., Crispino, J. D., Abrams, C. S. & Ji, P., Jan 2 2018, In : Journal of Clinical Investigation. 128, 1, p. 125-140 16 p.

Research output: Contribution to journalArticle

Blood Vessels
Neoplasms
Erythrocyte Volume
Thrombocytosis
Philadelphia Chromosome
1 Citation (Scopus)
deletion
metabolism
Cardiomyopathies
Energy Metabolism
mice
1 Citation (Scopus)

Prepubertal ovariectomy exaggerates adult affective behaviors and alters the hippocampal transcriptome in a genetic rat model of depression

Raghavan, N. S., Chen, H., Schipma, M., Luo, W., Chung, S., Wang, L. & Redei, E. E., Jan 22 2018, In : Frontiers in Endocrinology. 8, JAN, 373.

Research output: Contribution to journalArticle

Genetic Models
Ovariectomy
Transcriptome
Depression
Genetic Predisposition to Disease
2 Citations (Scopus)

Trans-differentiation of outer hair cells into inner hair cells in the absence of INSM1

Wiwatpanit, T., Lorenzen, S. M., Cantú, J. A., Foo, C. Z., Hogan, A. K., Márquez, F., Clancy, J. C., Schipma, M. J., Cheatham, M. A., Duggan, A. & Garcia-Anoveros, J., Nov 29 2018, In : Nature. 563, 7733, p. 691-695 5 p.

Research output: Contribution to journalLetter

Outer Auditory Hair Cells
Inner Auditory Hair Cells
Cochlea
Auditory Hair Cells
Genes
2017
8 Citations (Scopus)

Androgen receptor-deficient islet β-cells exhibit alteration in genetic markers of insulin secretion and inflammation. A transcriptome analysis in the male mouse

Xu, W., Niu, T., Xu, B., Navarro, G., Schipma, M. J. & Mauvais-Jarvis, F., May 1 2017, In : Journal of Diabetes and Its Complications. 31, 5, p. 787-795 9 p.

Research output: Contribution to journalArticle

Androgen Receptors
Gene Expression Profiling
Islets of Langerhans
Genetic Markers
Insulin
3 Citations (Scopus)

Hepatic deletion of X-box binding protein 1 impairs bile acid metabolism in mice

Liu, X., Henkel, A. S., Lecuyer, B. E., Hubchak, S. C., Schipma, M. J., Zhang, E. & Green, R. M., Jan 1 2017, In : Journal of Lipid Research. 58, 3, p. 504-511 8 p.

Research output: Contribution to journalArticle

Bile Acids and Salts
Metabolism
Carrier Proteins
Cholestyramine Resin
Liver
2016
8 Citations (Scopus)

Cardiomyocyte-Specific Ablation of Med1 Subunit of the Mediator Complex Causes Lethal Dilated Cardiomyopathy in Mice

Jia, Y., Chang, H. C., Schipma, M. J., Liu, J., Shete, V., Liu, N., Sato, T., Thorp, E. B., Barger, P. M., Zhu, Y. J., Viswakarma, N., Kanwar, Y. S., Ardehali, H., Thimmapaya, B. & Reddy, J. K., Aug 1 2016, In : PloS one. 11, 8, e0160755.

Research output: Contribution to journalArticle

Mediator Complex Subunit 1
cardiomyopathy
Dilated Cardiomyopathy
Ablation
lethal genes
11 Citations (Scopus)

Genome-wide transcriptional regulation of estrogen receptor targets in fallopian tube cells and the role of selective estrogen receptor modulators

Moyle-Heyrman, G., Schipma, M. J., Dean, M., Davis, D. A. & Burdette, J. E., Feb 15 2016, In : Journal of Ovarian Research. 9, 1, 5.

Research output: Contribution to journalArticle

Selective Estrogen Receptor Modulators
Fallopian Tubes
Estrogen Receptors
Ovarian Neoplasms
Genome
27 Citations (Scopus)

Nuclear Condensation during Mouse Erythropoiesis Requires Caspase-3-Mediated Nuclear Opening

Zhao, B., Mei, Y., Schipma, M. J., Roth, E. W., Bleher, R., Rappoport, J. Z., Wickrema, A., Yang, J. & Ji, P., Mar 7 2016, In : Developmental Cell. 36, 5, p. 498-510 13 p.

Research output: Contribution to journalArticle

Erythropoiesis
Caspase 3
Chromatin
Condensation
Histones
21 Citations (Scopus)

PBRM1 regulates the expression of genes involved in metabolism and cell adhesion in renal clear cell carcinoma

Chowdhury, B., Porter, E. G., Stewart, J. C., Ferreira, C. R., Schipma, M. J. & Dykhuizen, E. C., Apr 1 2016, In : PLoS One. 11, 4, e0153718.

Research output: Contribution to journalArticle

Cell adhesion
Renal Cell Carcinoma
cell adhesion
Metabolism
Cell Adhesion
1 Citation (Scopus)

αB-crystallin and HspB2 deficiency is protective from diet-induced glucose intolerance

Toft, D. J., Fuller, M., Schipma, M. J., Chen, F., Cryns, V. L. & Layden, B. T., Sep 1 2016, In : Genomics Data. 9, p. 10-17 8 p.

Research output: Contribution to journalArticle

Crystallins
Glucose Intolerance
Nutrition
Diet
High Fat Diet
2015
12 Citations (Scopus)

Divergent target recognition by coexpressed 5′-isomiRs of miR-142-3p and selective viral mimicry

Manzano, M., Forte, E., Raja, A. N., Schipma, M. J. & Gottwein, E., Sep 1 2015, In : RNA. 21, 9, p. 1606-1620 15 p.

Research output: Contribution to journalArticle

MicroRNAs
Binding Sites
Vertebrates
Actins
Seeds
1 Citation (Scopus)
Vibrio vulnificus
Genotype
Genome
Ostreidae
Wound Infection
16 Citations (Scopus)
Protein Deficiency
High Fat Diet
Hepatocytes
Liver
Wounds and Injuries
14 Citations (Scopus)

MicroRNA-mediated transformation by the Kaposi's sarcomaassociated herpesvirus Kaposin locus

Forte, E., Raja, A. N., Shamulailatpam, P., Manzano, M., Schipma, M. J., Casey, J. L. & Gottwein, E., Jan 1 2015, In : Journal of virology. 89, 4, p. 2333-2341 9 p.

Research output: Contribution to journalArticle

Herpesviridae
MicroRNAs
microRNA
Human herpesvirus 8
Human Herpesvirus 8
112 Citations (Scopus)

Pancreatic b cell enhancers regulate rhythmic transcription of genes controlling insulin secretion

Perelis, M., Marcheva, B., Ramsey, K. M., Schipma, M. J., Hutchison, A. L., Taguchi, A., Bien, C., Hong, H., Huang, W., Omura, C., Allred, A. L., Bradfield, C. A., Dinner, A. R., Barish, G. D. & Bass, J., Nov 6 2015, In : Science. 350, 6261

Research output: Contribution to journalArticle

Insulin
Genes
Transcription Factors
Glucose Intolerance
Gene Regulatory Networks
2014
19 Citations (Scopus)

Aberrant overexpression of CD14 on granulocytes sensitizes the innate immune response in mDia1 heterozygous del(5q) MDS

Keerthivasan, G., Mei, Y., Zhao, B., Zhang, L., Harris, C. E., Gao, J., Basiorka, A. A., Schipma, M. J., McElherne, J., Yang, J., Verma, A. K., Pellagatti, A., Boultwood, J., List, A. F., Williams, D. A. & Ji, P., Jul 31 2014, In : Blood. 124, 5, p. 780-790 11 p.

Research output: Contribution to journalArticle

Myelodysplastic Syndromes
Granulocytes
Innate Immunity
Lipopolysaccharides
Toll-Like Receptor 4
5 Citations (Scopus)
Vibrio vulnificus
Disease Outbreaks
Genome
Tilapia
Seafood
5 Citations (Scopus)

Draft genome sequence of Israeli outbreak-associated Vibrio vulnificus biotype 3 clinical isolate BAA87

Phillips, K. E., Schipma, M. J. & Satchell, K. J. F., Jan 1 2014, In : Genome Announcements. 2, 2, e00032-14.

Research output: Contribution to journalArticle

Vibrio vulnificus
Disease Outbreaks
Genome
Tilapia
Seafood
25 Citations (Scopus)

Genome-wide analysis of small RNAs expressed by Yersinia pestis identifies a regulator of the Yop-Ysc type III secretion system

Schiano, C. A., Koo, J. T., Schipma, M. J., Caulfield, A. J., Jafari, N. & Lathem, W. W., Jan 1 2014, In : Journal of bacteriology. 196, 9, p. 1659-1670 12 p.

Research output: Contribution to journalArticle

Yersinia pestis
Small Untranslated RNA
Genome
RNA
Yersinia
16 Citations (Scopus)

Regulation of glucose-dependent gene expression by the RNA helicase Dbp2 in Saccharomyces cerevisiae

Beck, Z. T., Cloutier, S. C., Schipma, M. J., Petell, C. J., Ma, W. K. & Tran, E. J., Nov 1 2014, In : Genetics. 198, 3, p. 1001-1014 14 p.

Research output: Contribution to journalArticle

RNA Helicases
Saccharomyces cerevisiae
Monosaccharide Transport Proteins
Long Noncoding RNA
Gene Expression
2008
34 Citations (Scopus)

Genome sequence of the fish pathogen Renibacterium salmoninarum suggests reductive evolution away from an environmental arthrobacter ancestor

Wiens, G. D., Rockey, D. D., Wu, Z., Chang, J., Levy, R., Crane, S., Chen, D. S., Capri, G. R., Burnett, J. R., Sudheesh, P. S., Schipma, M. J., Burd, H., Bhattacharyya, A., Rhodes, L. D., Kaul, R. & Strom, M. S., Nov 1 2008, In : Journal of bacteriology. 190, 21, p. 6970-6982 13 p.

Research output: Contribution to journalArticle

Arthrobacter
Fishes
Genome
Open Reading Frames
Salmonidae
2007
12 Citations (Scopus)

Oligonucleotide microarray identification of Bacillus anthracis strains using support vector machines

Doran, M., Raicu, D. S., Furst, J. D., Settimi, R., Schipma, M. & Chandler, D. P., Feb 15 2007, In : Bioinformatics. 23, 4, p. 487-492 6 p.

Research output: Contribution to journalArticle

Bacillus anthracis
Oligonucleotides
Bacilli
Microarrays
Oligonucleotide Array Sequence Analysis
2006
11 Citations (Scopus)

Diagnostic oligonucleotide microarray fingerprinting of Bacillus isolates

Chandler, D. P., Alferov, O., Chernov, B., Daly, D. S., Golova, J., Perov, A., Protic, M., Robison, R., Schipma, M., White, A. & Willse, A., Jan 1 2006, In : Journal of Clinical Microbiology. 44, 1, p. 244-250 7 p.

Research output: Contribution to journalArticle

Oligonucleotide Array Sequence Analysis
Bacillus
DNA Fingerprinting
Genotype
Genome
27 Citations (Scopus)

Suspension array analysis of 16S rRNA from Fe- and SO4 2-reducing bacteria in uranium-contaminated sediments undergoing bioremediation

Chandler, D. P., Jarrell, A. E., Roden, E. R., Golova, J., Chernov, B., Schipma, M. J., Peacock, A. D. & Long, P. E., Jul 1 2006, In : Applied and Environmental Microbiology. 72, 7, p. 4672-4687 16 p.

Research output: Contribution to journalArticle

Environmental Biodegradation
Uranium
uranium
bioremediation
Sulfates
2004
41 Citations (Scopus)

Inhibition of amyloid-β-induced neurotoxicity and apoptosis by moderate ethanol preconditioning

Belmadani, A., Kumar, S., Schipma, M., Collins, M. A. & Neafsey, E. J., Sep 1 2004, In : NeuroReport. 15, 13, p. 2093-2096 4 p.

Research output: Contribution to journalArticle

Amyloid
Ethanol
Apoptosis
Alzheimer Disease
Human Immunodeficiency Virus Proteins
2002
Neurosciences
HIV-1
Glutamic Acid
Glycoproteins
Ethanol
2001
34 Citations (Scopus)

Ethanol pre-exposure suppresses HIV-1 glycoprotein 120-induced neuronal degeneration by abrogating endogenous glutamate/Ca2+-mediated neurotoxicity

Belmadani, A., Zou, J. Y., Schipma, M. J., Neafsey, E. J. & Collins, M. A., Jun 14 2001, In : Neuroscience. 104, 3, p. 769-781 13 p.

Research output: Contribution to journalArticle

HIV-1
Glutamic Acid
Glycoproteins
Ethanol
Neuroglia