Matthew John Schipma

  • 656 Citations
20012020

Research output per year

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Research Output

  • 656 Citations
  • 33 Article
  • 2 Comment/debate

6mer Seed Toxicity in Viral microRNAs

Murmann, A. E., Bartom, E. T., Schipma, M. J., Vilker, J., Chen, S. & Peter, M. E., Feb 21 2020, In : iScience. 23, 2, 100737.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Aberrant overexpression of CD14 on granulocytes sensitizes the innate immune response in mDia1 heterozygous del(5q) MDS

Keerthivasan, G., Mei, Y., Zhao, B., Zhang, L., Harris, C. E., Gao, J., Basiorka, A. A., Schipma, M. J., McElherne, J., Yang, J., Verma, A. K., Pellagatti, A., Boultwood, J., List, A. F., Williams, D. A. & Ji, P., Jul 31 2014, In : Blood. 124, 5, p. 780-790 11 p.

Research output: Contribution to journalArticle

25 Scopus citations

A Carcinogen-induced mouse model recapitulates the molecular alterations of human muscle invasive bladder cancer

Fantini, D., Glaser, A. P., Rimar, K. J., Wang, Y., Schipma, M., Varghese, N., Rademaker, A., Behdad, A., Yellapa, A., Yu, Y., Sze, C. C. L., Wang, L., Zhao, Z., Crawford, S. E., Hu, D., Licht, J. D., Collings, C. K., Bartom, E., Theodorescu, D., Shilatifard, A. & 1 others, Meeks, J. J., Apr 1 2018, In : Oncogene. 37, 14, p. 1911-1925 15 p.

Research output: Contribution to journalArticle

30 Scopus citations

Androgen receptor-deficient islet β-cells exhibit alteration in genetic markers of insulin secretion and inflammation. A transcriptome analysis in the male mouse

Xu, W., Niu, T., Xu, B., Navarro, G., Schipma, M. J. & Mauvais-Jarvis, F., May 2017, In : Journal of Diabetes and Its Complications. 31, 5, p. 787-795 9 p.

Research output: Contribution to journalArticle

13 Scopus citations

Biomaterial Scaffolds as Pre-metastatic Niche Mimics Systemically Alter the Primary Tumor and Tumor Microenvironment

Aguado, B. A., Hartfield, R. M., Bushnell, G. G., Decker, J. T., Azarin, S. M., Nanavati, D., Schipma, M. J., Rao, S. S., Oakes, R. S., Zhang, Y., Jeruss, J. S. & Shea, L. D., May 23 2018, In : Advanced Healthcare Materials. 7, 10, 1700903.

Research output: Contribution to journalArticle

14 Scopus citations

Cardiomyocyte-Specific Ablation of Med1 Subunit of the Mediator Complex Causes Lethal Dilated Cardiomyopathy in Mice

Jia, Y., Chang, H. C., Schipma, M. J., Liu, J., Shete, V., Liu, N., Sato, T., Thorp, E. B., Barger, P. M., Zhu, Y. J., Viswakarma, N., Kanwar, Y. S., Ardehali, H., Thimmapaya, B. & Reddy, J. K., Aug 2016, In : PloS one. 11, 8, e0160755.

Research output: Contribution to journalArticle

10 Scopus citations

Diagnostic oligonucleotide microarray fingerprinting of Bacillus isolates

Chandler, D. P., Alferov, O., Chernov, B., Daly, D. S., Golova, J., Perov, A., Protic, M., Robison, R., Schipma, M., White, A. & Willse, A., Jan 2006, In : Journal of clinical microbiology. 44, 1, p. 244-250 7 p.

Research output: Contribution to journalArticle

11 Scopus citations

Divergent target recognition by coexpressed 5′-isomiRs of miR-142-3p and selective viral mimicry

Manzano, M., Forte, E., Raja, A. N., Schipma, M. J. & Gottwein, E., Sep 1 2015, In : RNA. 21, 9, p. 1606-1620 15 p.

Research output: Contribution to journalArticle

17 Scopus citations
5 Scopus citations
1 Scopus citations

Efferocytosis Fuels Requirements of Fatty Acid Oxidation and the Electron Transport Chain to Polarize Macrophages for Tissue Repair

Zhang, S., Weinberg, S., DeBerge, M., Gainullina, A., Schipma, M., Kinchen, J. M., Ben-Sahra, I., Gius, D. R., Yvan-Charvet, L., Chandel, N. S., Schumacker, P. T. & Thorp, E. B., Feb 5 2019, In : Cell Metabolism. 29, 2, p. 443-456.e5

Research output: Contribution to journalArticle

35 Scopus citations

Erratum to: Trans-differentiation of outer hair cells into inner hair cells in the absence of INSM1 (Nature, (2018), 563, 7733, (691-695), 10.1038/s41586-018-0570-8)

Wiwatpanit, T., Lorenzen, S. M., Cantú, J. A., Foo, C. Z., Hogan, A. K., Márquez, F., Clancy, J. C., Schipma, M. J., Cheatham, M. A., Duggan, A. & García-Añoveros, J., Jan 3 2019, In : Nature. 565, 7737, p. E2

Research output: Contribution to journalComment/debate

Ethanol pre-exposure suppresses HIV-1 glycoprotein 120-induced neuronal degeneration by abrogating endogenous glutamate/Ca2+-mediated neurotoxicity

Belmadani, A., Zou, J. Y., Schipma, M. J., Neafsey, E. J. & Collins, M. A., Jun 14 2001, In : Neuroscience. 104, 3, p. 769-781 13 p.

Research output: Contribution to journalArticle

35 Scopus citations

Genome sequence of the fish pathogen Renibacterium salmoninarum suggests reductive evolution away from an environmental arthrobacter ancestor

Wiens, G. D., Rockey, D. D., Wu, Z., Chang, J., Levy, R., Crane, S., Chen, D. S., Capri, G. R., Burnett, J. R., Sudheesh, P. S., Schipma, M. J., Burd, H., Bhattacharyya, A., Rhodes, L. D., Kaul, R. & Strom, M. S., Nov 2008, In : Journal of bacteriology. 190, 21, p. 6970-6982 13 p.

Research output: Contribution to journalArticle

37 Scopus citations

Genome-wide analysis of small RNAs expressed by Yersinia pestis identifies a regulator of the Yop-Ysc type III secretion system

Schiano, C. A., Koo, J. T., Schipma, M. J., Caulfield, A. J., Jafari, N. & Lathem, W. W., May 2014, In : Journal of bacteriology. 196, 9, p. 1659-1670 12 p.

Research output: Contribution to journalArticle

28 Scopus citations

Genome-wide transcriptional regulation of estrogen receptor targets in fallopian tube cells and the role of selective estrogen receptor modulators

Moyle-Heyrman, G., Schipma, M. J., Dean, M., Davis, D. A. & Burdette, J. E., Feb 15 2016, In : Journal of Ovarian Research. 9, 1, 5.

Research output: Contribution to journalArticle

15 Scopus citations

Hepatic deletion of X-box binding protein 1 impairs bile acid metabolism in mice

Liu, X., Henkel, A. S., Lecuyer, B. E., Hubchak, S. C., Schipma, M. J., Zhang, E. & Green, R. M., Jan 1 2017, In : Journal of lipid research. 58, 3, p. 504-511 8 p.

Research output: Contribution to journalArticle

5 Scopus citations
24 Scopus citations

Inhibition of amyloid-β-induced neurotoxicity and apoptosis by moderate ethanol preconditioning

Belmadani, A., Kumar, S., Schipma, M., Collins, M. A. & Neafsey, E. J., Sep 1 2004, In : NeuroReport. 15, 13, p. 2093-2096 4 p.

Research output: Contribution to journalArticle

45 Scopus citations

Loss of pleckstrin-2 reverts lethality and vascular occlusions in JAK2 V617F -positive myeloproliferative neoplasms

Zhao, B., Mei, Y., Cao, L., Zhang, J., Sumagin, R., Yang, J., Gao, J., Schipma, M. J., Wang, Y., Thorsheim, C., Zhao, L., Stalker, T., Stein, B., Wen, Q. J., Crispino, J. D., Abrams, C. S. & Ji, P., Jan 2 2018, In : Journal of Clinical Investigation. 128, 1, p. 125-140 16 p.

Research output: Contribution to journalArticle

3 Scopus citations

MicroRNA-mediated transformation by the Kaposi's sarcomaassociated herpesvirus Kaposin locus

Forte, E., Raja, A. N., Shamulailatpam, P., Manzano, M., Schipma, M. J., Casey, J. L. & Gottwein, E., 2015, In : Journal of virology. 89, 4, p. 2333-2341 9 p.

Research output: Contribution to journalArticle

15 Scopus citations

Nuclear Condensation during Mouse Erythropoiesis Requires Caspase-3-Mediated Nuclear Opening

Zhao, B., Mei, Y., Schipma, M. J., Roth, E. W., Bleher, R., Rappoport, J. Z., Wickrema, A., Yang, J. & Ji, P., Mar 7 2016, In : Developmental Cell. 36, 5, p. 498-510 13 p.

Research output: Contribution to journalArticle

35 Scopus citations

Oligonucleotide microarray identification of Bacillus anthracis strains using support vector machines

Doran, M., Raicu, D. S., Furst, J. D., Settimi, R., Schipma, M. & Chandler, D. P., Feb 15 2007, In : Bioinformatics. 23, 4, p. 487-492 6 p.

Research output: Contribution to journalArticle

12 Scopus citations

Pancreatic b cell enhancers regulate rhythmic transcription of genes controlling insulin secretion

Perelis, M., Marcheva, B., Ramsey, K. M., Schipma, M. J., Hutchison, A. L., Taguchi, A., Peek, C. B., Hong, H., Huang, W., Omura, C., Allred, A. L., Bradfield, C. A., Dinner, A. R., Barish, G. D. & Bass, J., Nov 6 2015, In : Science. 350, 6261

Research output: Contribution to journalArticle

144 Scopus citations

PBRM1 regulates the expression of genes involved in metabolism and cell adhesion in renal clear cell carcinoma

Chowdhury, B., Porter, E. G., Stewart, J. C., Ferreira, C. R., Schipma, M. J. & Dykhuizen, E. C., Apr 2016, In : PloS one. 11, 4, e0153718.

Research output: Contribution to journalArticle

27 Scopus citations

PIMT/NCOA6IP deletion in the mouse heart causes delayed cardiomyopathy attributable to perturbation in energy metabolism

Jia, Y., Liu, N., Viswakarma, N., Sun, R., Schipma, M. J., Shang, M., Thorp, E. B., Kanwar, Y. S., Thimmapaya, B. & Reddy, J. K., May 16 2018, In : International journal of molecular sciences. 19, 5, 1485.

Research output: Contribution to journalArticle

2 Scopus citations

Prepubertal ovariectomy exaggerates adult affective behaviors and alters the hippocampal transcriptome in a genetic rat model of depression

Raghavan, N. S., Chen, H., Schipma, M., Luo, W., Chung, S., Wang, L. & Redei, E. E., Jan 22 2018, In : Frontiers in Endocrinology. 8, JAN, 373.

Research output: Contribution to journalArticle

3 Scopus citations

Regulation of glucose-dependent gene expression by the RNA helicase Dbp2 in Saccharomyces cerevisiae

Beck, Z. T., Cloutier, S. C., Schipma, M. J., Petell, C. J., Ma, W. K. & Tran, E. J., Nov 1 2014, In : Genetics. 198, 3, p. 1001-1014 14 p.

Research output: Contribution to journalArticle

17 Scopus citations

Strain Differences in Responsiveness to Repeated Restraint Stress Affect Remote Contextual Fear Memory and Blood Transcriptomics

Jung, S. H., Meckes, J. K., Schipma, M. J., Lim, P. H., Jenz, S. T., Przybyl, K., Wert, S. L., Kim, S., Luo, W., Gacek, S. A., Jankord, R., Hatcher-Solis, C. & Redei, E. E., Sep 15 2020, In : Neuroscience. 444, p. 76-91 16 p.

Research output: Contribution to journalArticle

Open Access

Suspension array analysis of 16S rRNA from Fe- and SO4 2-reducing bacteria in uranium-contaminated sediments undergoing bioremediation

Chandler, D. P., Jarrell, A. E., Roden, E. R., Golova, J., Chernov, B., Schipma, M. J., Peacock, A. D. & Long, P. E., Jul 1 2006, In : Applied and Environmental Microbiology. 72, 7, p. 4672-4687 16 p.

Research output: Contribution to journalArticle

29 Scopus citations
Open Access
3 Scopus citations

The Oncogenic Kaposi's Sarcoma-Associated Herpesvirus Encodes a Mimic of the Tumor-Suppressive miR-15/16 miRNA Family

Morrison, K., Manzano, M., Chung, K., Schipma, M. J., Bartom, E. T. & Gottwein, E., Dec 3 2019, In : Cell reports. 29, 10, p. 2961-2969.e6

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

Trans-differentiation of outer hair cells into inner hair cells in the absence of INSM1

Wiwatpanit, T., Lorenzen, S. M., Cantú, J. A., Foo, C. Z., Hogan, A. K., Márquez, F., Clancy, J. C., Schipma, M. J., Cheatham, M. A., Duggan, A. & García-Añoveros, J., Nov 29 2018, In : Nature. 563, 7733, p. 691-695 5 p.

Research output: Contribution to journalArticle

12 Scopus citations

αB-crystallin and HspB2 deficiency is protective from diet-induced glucose intolerance

Toft, D. J., Fuller, M., Schipma, M., Chen, F., Cryns, V. L. & Layden, B. T., Sep 1 2016, In : Genomics Data. 9, p. 10-17 8 p.

Research output: Contribution to journalArticle

1 Scopus citations