Neil L Kelleher

Search results

• MassIVE MSV000087529 - Next-generation Serology by Mass Spectrometry: Readout of the SARS-CoV-2 Antibody Repertoire

  Kelleher, N. (Creator), MassIVE, 2021

  DOI: 10.25345/c51529, https://massive.ucsd.edu/ProteoSAFe/dataset.jsp?accession=MSV000087529

  Dataset

• MassIVE MSV000083972 - Thorough performance evaluation of 213 nm ultraviolet photodissociation for top-down proteomics

  Kelleher, N. (Creator), MassIVE, 2019

  DOI: 10.25345/c5306q, https://massive.ucsd.edu/ProteoSAFe/dataset.jsp?accession=MSV000083972

  Dataset

• Crystal structure of 304M3-B Fab in complex with H3K4me3 peptide

  Hattori, T. (Contributor), Lai, D. (Contributor), Dementieva, I. S. (Contributor), Montaño, S. P. (Contributor), Kurosawa, K. (Contributor), Zheng, Y. (Contributor), Akin, L. R. (Contributor), ͆wist-Rosowska, K. M. (Contributor), Grzybowski, A. T. (Contributor), Koide, A. (Contributor), Krajewski, K. (Contributor), Strahl, B. D. (Contributor), Kelleher, N. L. (Contributor), Ruthenburg, A. J. (Contributor) & Koide, S. (Contributor), Protein Data Bank (PDB), Feb 10 2016

  DOI: 10.2210/pdb4YHZ/pdb, https://www.wwpdb.org/pdb?id=pdb_00004yhz

  Dataset

• Ornithine Aminotransferase (OAT) cocrystallized with its potent inhibitor - (S)-3-amino-4,4-difluorocyclopent-1-enecarboxylic acid (SS-1-148)

  Shen, S. (Contributor), Butrin, A. (Contributor), Doubleday, P. F. (Contributor), Melani, R. D. (Contributor), Beaupre, B. A. (Contributor), Tavares, M. T. (Contributor), Ferreira, G. M. (Contributor), Kelleher, N. L. (Contributor), Moran, G. R. (Contributor), Liu, D. (Contributor) & Silverman, R. B. (Contributor), Protein Data Bank (PDB), Feb 16 2022

  DOI: 10.2210/pdb7LK0/pdb, https://www.wwpdb.org/pdb?id=pdb_00007lk0

  Dataset

• E.coli Aspartate aminotransferase-(1R,3S,4S)-3-amino-4-fluorocyclopentane-1-carboxylic acid (FCP)

  Mascarenhas, R. (Contributor), Le, H. V. (Contributor), Clevenger, K. D. (Contributor), Lehrer, H. J. (Contributor), Ringe, D. (Contributor), Kelleher, N. L. (Contributor), Silverman, R. B. (Contributor) & Liu, D. (Contributor), Protein Data Bank (PDB), Aug 30 2017

  DOI: 10.2210/pdb5VWQ/pdb, https://www.wwpdb.org/pdb?id=pdb_00005vwq

  Dataset

• Ornithine aminotransferase inactivated by (1R,3S,4S)-3-amino-4-fluorocyclopentane-1-carboxylic acid (FCP)

  Mascarenhas, R. (Contributor), Le, H. V. (Contributor), Clevenger, K. D. (Contributor), Lehrer, H. J. (Contributor), Ringe, D. (Contributor), Kelleher, N. L. (Contributor), Silverman, R. B. (Contributor) & Liu, D. (Contributor), Protein Data Bank (PDB), Aug 30 2017

  DOI: 10.2210/pdb5VWO/pdb, https://www.wwpdb.org/pdb?id=pdb_00005vwo

  Dataset

• Methanobactin biosynthetic protein complex of MbnB and MbnC from Methylosinus trichosporium OB3b at 2.21 Angstrom resolution

  Park, Y. J. (Contributor), Jodts, R. J. (Contributor), Slater, J. W. (Contributor), Reyes, R. M. (Contributor), Winton, V. J. (Contributor), Montaser, R. A. (Contributor), Thomas, P. M. (Contributor), Dowdle, W. B. (Contributor), Ruiz, A. (Contributor), Kelleher, N. L. (Contributor), Bollinger, J. M. (Contributor), Krebs, C. (Contributor), Hoffman, B. M. (Contributor) & Rosenzweig, A. C. (Contributor), Protein Data Bank (PDB), Mar 23 2022

  DOI: 10.2210/pdb7TCX/pdb, https://www.wwpdb.org/pdb?id=pdb_00007tcx

  Dataset

• Crystal structure of 309M3-B Fab in complex with H3K9me3 peptide

  Hattori, T. (Contributor), Lai, D. (Contributor), Dementieva, I. S. (Contributor), Montaño, S. P. (Contributor), Kurosawa, K. (Contributor), Zheng, Y. (Contributor), Akin, L. R. (Contributor), ͆wist-Rosowska, K. M. (Contributor), Grzybowski, A. T. (Contributor), Koide, A. (Contributor), Krajewski, K. (Contributor), Strahl, B. D. (Contributor), Kelleher, N. L. (Contributor), Ruthenburg, A. J. (Contributor) & Koide, S. (Contributor), Protein Data Bank (PDB), Feb 10 2016

  DOI: 10.2210/pdb4YHP/pdb, https://www.wwpdb.org/pdb?id=pdb_00004yhp

  Dataset

• MassIVE MSV000091481 - MSModDetector: A Tool for Detecting Mass Shifts and Post-Translational Modifications in Individual Ion Mass Spectrometry Data

  Kelleher, N. (Creator), MassIVE, 2023

  DOI: 10.25345/c55q4rw7z, https://massive.ucsd.edu/ProteoSAFe/dataset.jsp?accession=MSV000091481

  Dataset

• Ornithine Aminotransferase (OAT) cocrystallized with its inactivator - (1S,3S)-3-amino-4-(difluoromethylene)cyclohexene-1-carboxylic acid

  Zhu, W. (Contributor), Doubleday, P. F. (Contributor), Butrin, A. (Contributor), Weerawarna, P. M. (Contributor), Melani, R. D. (Contributor), Catlin, D. S. (Contributor), Dwight, T. A. (Contributor), Liu, D. (Contributor), Kelleher, N. L. (Contributor) & Silverman, R. B. (Contributor), Protein Data Bank (PDB), Aug 25 2021

  DOI: 10.2210/pdb7LON/pdb, https://www.wwpdb.org/pdb?id=pdb_00007lon

  Dataset

• Gamma-aminobutyric acid aminotransferase inactivated by (1S,3S)-3-amino-4-difluoromethylenyl-1-cyclopentanoic acid (CPP-115)

  Lee, H. (Contributor), Doud, E. H. (Contributor), Wu, R. (Contributor), Sanishvili, R. (Contributor), Juncosa, J. I. (Contributor), Liu, D. (Contributor), Kelleher, N. L. (Contributor) & Silverman, R. B. (Contributor), Protein Data Bank (PDB), Mar 11 2015

  DOI: 10.2210/pdb4Y0H/pdb, https://www.wwpdb.org/pdb?id=pdb_00004y0h

  Dataset

• MassIVE MSV000085238 - Decoding the protein composition of whole nucleosomes with Nuc-MS

  Kelleher, N. L. (Creator), MassIVE, 2020

  DOI: 10.25345/c5g11k, https://massive.ucsd.edu/ProteoSAFe/dataset.jsp?accession=MSV000085238

  Dataset

• Multidimensional Top-Down Proteomics of Brain Region-Specific Mouse Brain Proteoforms Responsive to Cocaine and Estradiol

  Kelleher, N. (Creator), MassIVE, 2018

  DOI: 10.25345/c5bs3p, https://massive.ucsd.edu/ProteoSAFe/dataset.jsp?accession=MSV000083093

  Dataset

• Data for human ovarian cancer tissues, including spatially-resolved MS1 data, label-free quantitation, and tissue proteoform MS2 data

  Kelleher, N. L. (Creator), MassIVE, 2023

  DOI: 10.25345/c5tm72b3k, https://massive.ucsd.edu/ProteoSAFe/dataset.jsp?accession=MSV000092418

  Dataset

• Structure of Human NMT2 with myristoyl-lysine peptide and CoA products

  Kosciuk, T. (Contributor), Price, I. R. (Contributor), Zhang, X. (Contributor), Zhu, C. (Contributor), Johnson, K. N. (Contributor), Zhang, S. (Contributor), Halaby, S. L. (Contributor), Komaniecki, G. P. (Contributor), Yang, M. (Contributor), DeHart, C. J. (Contributor), Thomas, P. M. (Contributor), Kelleher, N. L. (Contributor), Christopher, F. J. (Contributor) & Lin, H. (Contributor), Protein Data Bank (PDB), Mar 11 2020

  DOI: 10.2210/pdb6PAU/pdb, https://www.wwpdb.org/pdb?id=pdb_00006pau

  Dataset

• Pig Brain GABA-AT inactivated by (E)-(1S,3S)-3-Amino-4-fluoromethylenyl-1-cyclopentanoic acid

  Lee, H. (Contributor), Le, H. V. (Contributor), Wu, R. (Contributor), Doud, E. (Contributor), Sanishvili, R. (Contributor), Kellie, J. F. (Contributor), Compton, P. D. (Contributor), Pachaiyappan, B. (Contributor), Liu, D. (Contributor), Kelleher, N. L. (Contributor) & Silverman, R. B. (Contributor), Protein Data Bank (PDB), Jul 8 2015

  DOI: 10.2210/pdb4ZSW/pdb, https://www.wwpdb.org/pdb?id=pdb_00004zsw

  Dataset

• The Mechanism of N2 Reduction Catalyzed by Fe-Nitrogenase Involves Reductive Elimination of H2

  Harris, D. F. (Contributor), Lukoyanov, D. A. (Contributor), Shaw, S. (Contributor), Compton, P. (Contributor), Tokmina-Lukaszewska, M. (Contributor), Bothner, B. (Contributor), Kelleher, N. (Contributor), Dean, D. R. (Contributor), Hoffman, B. M. (Contributor), Seefeldt, L. C. (Contributor) & Khadka, N. (Contributor), ZENODO, Nov 2 2017

  DOI: 10.5281/zenodo.1040952, https://zenodo.org/record/1040952

  Dataset

• Additional file 11 of Histone tail analysis reveals H3K36me2 and H4K16ac as epigenetic signatures of diffuse intrinsic pontine glioma

  An, S. (Contributor), Camarillo, J. M. (Creator), Huang, T.Y.-T. (Creator), Li, D. (Creator), Morris, J. A. (Creator), Zoltek, M. A. (Creator), Qi, J. (Creator), Behbahani, M. (Contributor), Kambhampati, M. (Creator), Kelleher, N. L. (Creator), Nazarian, J. (Creator), Thomas, P. M. (Creator) & Saratsis, A. M. (Creator), figshare, 2020

  DOI: 10.6084/m9.figshare.13291192, https://springernature.figshare.com/articles/dataset/Additional_file_11_of_Histone_tail_analysis_reveals_H3K36me2_and_H4K16ac_as_epigenetic_signatures_of_diffuse_intrinsic_pontine_glioma/13291192

  Dataset

• Histone tail analysis reveals H3K36me2 and H4K16ac as epigenetic signatures of diffuse intrinsic pontine glioma

  An, S. (Contributor), Camarillo, J. M. (Creator), Huang, T.Y.-T. (Creator), Li, D. (Creator), Morris, J. A. (Creator), Zoltek, M. A. (Creator), Qi, J. (Creator), Behbahani, M. (Contributor), Kambhampati, M. (Creator), Kelleher, N. L. (Creator), Nazarian, J. (Creator), Thomas, P. M. (Creator) & Saratsis, A. M. (Creator), figshare, 2020

  DOI: 10.6084/m9.figshare.c.5219932, https://springernature.figshare.com/collections/Histone_tail_analysis_reveals_H3K36me2_and_H4K16ac_as_epigenetic_signatures_of_diffuse_intrinsic_pontine_glioma/5219932

  Dataset

• Additional file 6 of Histone tail analysis reveals H3K36me2 and H4K16ac as epigenetic signatures of diffuse intrinsic pontine glioma

  An, S. (Contributor), Camarillo, J. M. (Creator), Huang, T.Y.-T. (Creator), Li, D. (Creator), Morris, J. A. (Creator), Zoltek, M. A. (Creator), Qi, J. (Creator), Behbahani, M. (Contributor), Kambhampati, M. (Creator), Kelleher, N. L. (Creator), Nazarian, J. (Creator), Thomas, P. M. (Creator) & Saratsis, A. M. (Creator), figshare, 2020

  DOI: 10.6084/m9.figshare.13291213, https://springernature.figshare.com/articles/dataset/Additional_file_6_of_Histone_tail_analysis_reveals_H3K36me2_and_H4K16ac_as_epigenetic_signatures_of_diffuse_intrinsic_pontine_glioma/13291213

  Dataset

• Additional file 9 of Histone tail analysis reveals H3K36me2 and H4K16ac as epigenetic signatures of diffuse intrinsic pontine glioma

  An, S. (Contributor), Camarillo, J. M. (Creator), Huang, T.Y.-T. (Creator), Li, D. (Creator), Morris, J. A. (Creator), Zoltek, M. A. (Creator), Qi, J. (Creator), Behbahani, M. (Contributor), Kambhampati, M. (Creator), Kelleher, N. L. (Creator), Nazarian, J. (Creator), Thomas, P. M. (Creator) & Saratsis, A. M. (Creator), figshare, 2020

  DOI: 10.6084/m9.figshare.13291222, https://springernature.figshare.com/articles/presentation/Additional_file_9_of_Histone_tail_analysis_reveals_H3K36me2_and_H4K16ac_as_epigenetic_signatures_of_diffuse_intrinsic_pontine_glioma/13291222

  Dataset

• Additional file 8 of Histone tail analysis reveals H3K36me2 and H4K16ac as epigenetic signatures of diffuse intrinsic pontine glioma

  An, S. (Contributor), Camarillo, J. M. (Creator), Huang, T.Y.-T. (Creator), Li, D. (Creator), Morris, J. A. (Creator), Zoltek, M. A. (Creator), Qi, J. (Creator), Behbahani, M. (Contributor), Kambhampati, M. (Creator), Kelleher, N. L. (Creator), Nazarian, J. (Creator), Thomas, P. M. (Creator) & Saratsis, A. M. (Creator), figshare, 2020

  DOI: 10.6084/m9.figshare.13291219, https://springernature.figshare.com/articles/dataset/Additional_file_8_of_Histone_tail_analysis_reveals_H3K36me2_and_H4K16ac_as_epigenetic_signatures_of_diffuse_intrinsic_pontine_glioma/13291219

  Dataset

• Additional file 1 of Histone tail analysis reveals H3K36me2 and H4K16ac as epigenetic signatures of diffuse intrinsic pontine glioma

  An, S. (Contributor), Camarillo, J. M. (Creator), Huang, T.Y.-T. (Creator), Li, D. (Creator), Morris, J. A. (Creator), Zoltek, M. A. (Creator), Qi, J. (Creator), Behbahani, M. (Contributor), Kambhampati, M. (Creator), Kelleher, N. L. (Creator), Nazarian, J. (Creator), Thomas, P. M. (Creator) & Saratsis, A. M. (Creator), figshare, 2020

  DOI: 10.6084/m9.figshare.13291198, https://springernature.figshare.com/articles/dataset/Additional_file_1_of_Histone_tail_analysis_reveals_H3K36me2_and_H4K16ac_as_epigenetic_signatures_of_diffuse_intrinsic_pontine_glioma/13291198

  Dataset

• This dataset includes .mzXML MS profiles for 110 fungal strains each grown on 3 media conditions for used for integrated metabologenomics analysis. Data were collected on a Q Exactive mass spectrometer. Solvent blanks, media blanks, and technical replicates for a subset of strains are also included.

  Kelleher, N. (Creator), MassIVE, 2022

  DOI: 10.25345/c56w96d4j, https://massive.ucsd.edu/ProteoSAFe/dataset.jsp?accession=MSV000089848

  Dataset

• MassIVE MSV000090199 - Divergent Antibody Repertoires Found for Omicron versus Wuhan SARS-CoV-2 Strains using Ig-MS

  Kelleher, N. L. (Creator), MassIVE, 2022

  DOI: 10.25345/c5r20s14x, https://massive.ucsd.edu/ProteoSAFe/dataset.jsp?accession=MSV000090199

  Dataset