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Ravi Allada

  • 3926 Citations
1989 …2023
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Personal profile

Research Interests

The Molecular Genetics of Circadian Rhythms and Sleep; Neurodegeneration and the Circadian Clock.

Education/Academic qualification

MD, University of Michigan

1989 → 1994

Biomedical Sciences, BS, University of Michigan

1985 → 1989

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Grants 2000 2023

Discovery of Novel Pathways Mediating Huntingtin Neurotoxicity

Allada, R.

National Institute of Neurological Disorders and Stroke

4/1/19 → 3/31/21

Project: Research project

Huntington Disease
Circadian Clocks
Neurodegenerative Diseases
Cell Death
Neurons

Discovery of Novel Therapeutics for Disordered Sleep in Fragile X Syndrome

Allada, R.

U.S. Army Medical Research and Materiel Command

9/1/18 → 2/28/21

Project: Research project

Fragile X Syndrome
Diptera
Sleep
Circadian Rhythm
Therapeutics

Northwestern University Quantitative Biology Center (NUQuB)

Allada, R., Amaral, L. A. N., Andersen, E. C., Auffinger, A. C., Bagheri, N., Braun, R. I., Carthew, R. W., Kath, W. L., LaBonne, C., Mangan, N. M., Mani, M., Wang, J. & Wang, X.

National Science Foundation

7/1/18 → 7/26/23

Project: Research project

growth and development
Biological Sciences
mathematical models
fruit flies
education

Northwestern University Quantitative Biology Center (NUQuB)

Allada, R., Amaral, L. A. N., Andersen, E. C., Auffinger, A. C., Bagheri, N., Braun, R. I., Carthew, R. W., Goldberg, B. B., Kath, W. L., LaBonne, C., Mangan, N. M., Mani, M., Wang, J. & Wang, X.

Simons Foundation

7/1/18 → 6/30/23

Project: Research project

growth and development
Biological Sciences
mathematical models
fruit flies
education

Molecular Mechanisms Integrating Circadian Timing and Photic Signaling

Allada, R.

National Institute of Neurological Disorders and Stroke

5/1/18 → 2/28/23

Project: Research project

circadian rhythm
photoperiod
Drosophila
liver
animals

Research Output 1989 2019

1 Citation (Scopus)

Circadian Clocks Function in Concert with Heat Shock Organizing Protein to Modulate Mutant Huntingtin Aggregation and Toxicity

Xu, F., Kula-Eversole, E., Iwanaszko, M., Hutchison, A. L., Dinner, A. & Allada, R., Apr 2 2019, In : Cell reports. 27, 1, p. 59-70.e4

Research output: Contribution to journal › Article

Open Access
Circadian Clocks
Huntington Disease
Heat-Shock Proteins
Toxicity
Clocks

Reply to Laing et al. Accurate prediction of circadian time across platforms

Braun, R. I., Kath, W. L., Iwanaszko, M., Kula-Eversole, E., Abbott, S. M., Reid, K. J., Zee, P. C. & Allada, R., Jan 1 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 12, p. 5206-5208 3 p.

Research output: Contribution to journal › Letter

Circadian Rhythm
Gene Expression
3 Citations (Scopus)

Bootstrapping and Empirical Bayes Methods Improve Rhythm Detection in Sparsely Sampled Data

Hutchison, A. L., Allada, R. & Dinner, A. R., Aug 1 2018, In : Journal of biological rhythms. 33, 4, p. 339-349 11 p.

Research output: Contribution to journal › Article

Genome
Uncertainty
Boidae
Costs and Cost Analysis
Genes
10 Citations (Scopus)

Universal method for robust detection of circadian state from gene expression

Braun, R. I., Kath, W. L., Iwanaszko, M., Kula-Eversole, E., Abbott, S. M., Reid, K. J., Zee, P. C. & Allada, R., Sep 25 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 39, p. E9247-E9256

Research output: Contribution to journal › Article

Gene Expression
Biomarkers
RNA Sequence Analysis
Biological Phenomena
Circadian Clocks
22 Citations (Scopus)

Guidelines for Genome-Scale Analysis of Biological Rhythms

Hughes, M. E., Abruzzi, K. C., Allada, R., Anafi, R., Arpat, A. B., Asher, G., Baldi, P., de Bekker, C., Bell-Pedersen, D., Blau, J., Brown, S., Ceriani, M. F., Chen, Z., Chiu, J. C., Cox, J., Crowell, A. M., DeBruyne, J. P., Dijk, D. J., DiTacchio, L., Doyle, F. J. & 73 othersDuffield, G. E., Dunlap, J. C., Eckel-Mahan, K., Esser, K. A., FitzGerald, G. A., Forger, D. B., Francey, L. J., Fu, Y. H., Gachon, F., Gatfield, D., de Goede, P., Golden, S. S., Green, C., Harer, J., Harmer, S., Haspel, J., Hastings, M. H., Herzel, H., Herzog, E. D., Hoffmann, C., Hong, C., Hughey, J. J., Hurley, J. M., de la Iglesia, H. O., Johnson, C., Kay, S. A., Koike, N., Kornacker, K., Kramer, A., Lamia, K., Leise, T., Lewis, S. A., Li, J., Li, X., Liu, A. C., Loros, J. J., Martino, T. A., Menet, J. S., Merrow, M., Millar, A. J., Mockler, T., Naef, F., Nagoshi, E., Nitabach, M. N., Olmedo, M., Nusinow, D. A., Ptáček, L. J., Rand, D., Reddy, A. B., Robles, M. S., Roenneberg, T., Rosbash, M., Ruben, M. D., Rund, S. S. C., Sancar, A., Sassone-Corsi, P., Sehgal, A., Sherrill-Mix, S., Skene, D. J., Storch, K. F., Takahashi, J. S., Ueda, H. R., Wang, H., Weitz, C., Westermark, P. O., Wijnen, H., Xu, Y., Wu, G., Yoo, S. H., Young, M., Zhang, E. E., Zielinski, T. & Hogenesch, J. B., Oct 1 2017, In : Journal of biological rhythms. 32, 5, p. 380-393 14 p.

Research output: Contribution to journal › Article

Periodicity
Genome
Guidelines
Synthetic Biology
Benchmarking