Grants per year
Personal profile
Research Interests
The focus of our lab is to acquire a quantitative mechanistic characterization of synaptic players at different length scales, from a single protein to the synapse level, to describe this complexity and towards understanding of the molecular nature of information processing in the brain. We do so by developing quantitative biophysical and cell biology analyses using cutting edge single molecule and high throughput approaches that draw from cell biology, chemistry, physics and engineering.
Education/Academic qualification
PhD, University of Illinois at Urbana-Champaign
… → 2012
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Collaborations and top research areas from the last five years
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Optogenomic mapping of chromatin accessibility in live cells
Wang, X. (PD/PI), Wang, X. (PD/PI), Vafabakhsh, R. (Co-Investigator), Vafabakhsh, R. (Co-Investigator), Wang, J. (Co-Investigator) & Wang, J. (Co-Investigator)
National Institute of General Medical Sciences
9/24/22 → 7/31/26
Project: Research project
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Quantitative analysis of metabotropic glutamate receptor activation and modulation
Vafabakhsh, R. (PD/PI) & Vafabakhsh, R. (PD/PI)
National Institute of General Medical Sciences
9/15/20 → 8/31/25
Project: Research project
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Supplement for Quantitative analysis of metabotropic glutamate receptor activation and modulation
Vafabakhsh, R. (PD/PI)
National Institute of General Medical Sciences
9/15/20 → 8/31/25
Project: Research project
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Kinetic Imaging Plate Reader for Drug Discovery and Biology
George, A. L. (PD/PI), Arispe, L. (Other), Bass, J. (Other), Burridge, P. (Other), DeCaen, P. G. (Other), Gianneschi, N. (Other), Horvath, C. M. (Other), Kiskinis, E. (Other), Klein, W. L. (Other), Miller, R. J. (Other), Morimoto, R. I. (Other), Moskal, J. R. (Other), Penzes, P. (Other), Prakriya, M. (Other), Scheidt, K. A. (Other), Surmeier Jr, D. J. (Other) & Vafabakhsh, R. (Other)
Office of the Director, National Institutes of Health
9/1/21 → 8/31/23
Project: Research project
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Multiscale biophysical analysis of nucleolus disassembly during mitosis
Pham, A. T., Mani, M., Wang, X. & Vafabakhsh, R., 2024, In: Proceedings of the National Academy of Sciences of the United States of America. 121, 6Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
Mapping the KRAS proteoform landscape in colorectal cancer identifies truncated KRAS4B that decreases MAPK signaling
Adams, L. M., DeHart, C. J., Drown, B. S., Anderson, L. C., Bocik, W., Boja, E. S., Hiltke, T. M., Hendrickson, C. L., Rodriguez, H., Caldwell, M., Vafabakhsh, R. & Kelleher, N. L., Jan 2023, In: Journal of Biological Chemistry. 299, 1, 102768.Research output: Contribution to journal › Article › peer-review
Open Access16 Scopus citations -
Structural basis of TFIIIC-dependent RNA polymerase III transcription initiation
Talyzina, A., Han, Y., Banerjee, C., Fishbain, S., Reyes, A., Vafabakhsh, R. & He, Y., Aug 3 2023, In: Molecular cell. 83, 15, p. 2641-2652.e7Research output: Contribution to journal › Article › peer-review
Open Access5 Scopus citations -
Conformational fingerprinting of allosteric modulators in metabotropic glutamate receptor 2
Wey-Hung Liauw, B., Foroutan, A., Schamber, M., Lu, W., Afsari, H. S. & Vafabakhsh, R., Jul 2022, In: eLife. 11, e78982.Research output: Contribution to journal › Article › peer-review
Open Access7 Scopus citations -
DNAcycP: a deep learning tool for DNA cyclizability prediction
Li, K., Carroll, M., Vafabakhsh, R., Wang, X. A. & Wang, J. P., Apr 8 2022, In: Nucleic acids research. 50, 6, p. 3142-3154 13 p.Research output: Contribution to journal › Article › peer-review
Open Access17 Scopus citations
Datasets
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TFIIIA-TFIIIC-Brf1-TBP complex bound to 5S rRNA gene
Talyzina, A. (Contributor), Han, Y. (Contributor), Banerjee, C. (Contributor), Fishbain, S. (Contributor), Reyes, A. (Contributor), Vafabakhsh, R. (Contributor) & He, Y. (Contributor), Protein Data Bank (PDB), Jun 21 2023
DOI: 10.2210/pdb8FFZ/pdb, https://www.wwpdb.org/pdb?id=pdb_00008ffz
Dataset