Grants per year
Personal profile
Research Interests
I am a computational biologist with an interest in the development of methods for integrative, systems-level analysis of multi-omics data. These methods incorporate bioinformatic information with experimental data to characterize the networks of interactions that lead to the emergence of complex disease. [Braun Lab | Google Scholar]
Education/Academic qualification
MPH, Biostatistics, Johns Hopkins University
… → 2006
PhD, Physics, University of Illinois at Urbana-Champaign
… → 2004
Research interests
- Big Data
- Bioinformatics
- Biophysics
- Biostatistics
- Computational Biology
- Genomics
- Network Science
- Systems Biology
Fingerprint
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Network
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
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REU Site: Quantitative Biology REU (QBREU) at Northwestern University
Braun, R. I., Andersen, E. C., Allada, R., Auffinger, A., Carthew, R. W., Kath, W. L., Kovacs, I., LaBonne, C., Lane, K. M., Mangan, N. M., Mani, M. & Wang, J.
4/15/22 → 3/31/25
Project: Research project
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PSC subproject - REU Site: Quantitative Biology REU (QBREU) at Northwestern University
4/15/22 → 3/31/25
Project: Research project
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Targeting abnormal alveolar immune activation and failed epithelial repair in COVID-19
Budinger, G. S., Misharin, A., Abdala-Valencia, H., Braun, R. I., Horvath, C. M., Lomasney, J. W., Prakriya, M., Wunderink, R. G., Yamashita, M. & Casalino Matsuda, M. S.
National Heart, Lung, and Blood Institute
4/1/22 → 3/31/26
Project: Research project
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Reconstructing the temporal landscape of gene regulation in aging
Braun, R. I., Reid, K. J. & Zee, P. C.
9/15/20 → 5/31/25
Project: Research project
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Quantitative analysis of transcriptome dynamics provides novel insights into developmental state transitions
Johnson, K., Freedman, S., Braun, R. & LaBonne, C., Dec 2022, In: BMC Genomics. 23, 1, 723.Research output: Contribution to journal › Article › peer-review
Open Access -
Validation of blood-based transcriptomic circadian phenotyping in older adults
Smith, S. K., Tran, P., Madden, K. A., Boyd, J., Braun, R., Musiek, E. S. & Ju, Y. E. S., Sep 8 2022, In: Sleep. 45, 9Research output: Contribution to journal › Article › peer-review
Open Access -
Autonomic dysregulation and sleep homeostasis in insomnia
Grimaldi, D., Reid, K. J., Papalambros, N. A., Braun, R. I., Malkani, R. G., Abbott, S. M., Ong, J. C. & Zee, P. C., Jun 1 2021, In: Sleep. 44, 6, p. 1-13 13 p.Research output: Contribution to journal › Article › peer-review
Open Access15 Scopus citations -
Comment on “Circadian rhythms in the absence of the clock gene Bmal1 ”
Ness-Cohn, E., Allada, R. & Braun, R., Apr 16 2021, In: Science. 372, 6539, eabe9230.Research output: Contribution to journal › Comment/debate › peer-review
3 Scopus citations -
Rest-activity rhythm disturbance in liver cirrhosis and association with cognitive impairment
Kim, M., Liotta, E. M., Maas, M. B., Braun, R. I., Garcia-Canga, B., Ganger, D. R., Ladner, D. P., Reid, K. J. & Zee, P. C., Jun 1 2021, In: Sleep. 44, 6, p. 1-10 10 p.Research output: Contribution to journal › Article › peer-review
5 Scopus citations
Datasets
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Additional file 5 of GeneSurrounder: network-based identification of disease genes in expression data
Shah, S. D. (Contributor) & Braun, R. I. (Creator), figshare, 2019
DOI: 10.6084/m9.figshare.8088053.v1, https://springernature.figshare.com/articles/Additional_file_5_of_GeneSurrounder_network-based_identification_of_disease_genes_in_expression_data/8088053/1
Dataset
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Time-lagged Ordered Lasso for network inference
Nguyen, P. (Creator) & Braun, R. I. (Creator), figshare, 2018
DOI: 10.6084/m9.figshare.c.4351031.v1, https://springernature.figshare.com/collections/Time-lagged_Ordered_Lasso_for_network_inference/4351031/1
Dataset
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Additional file 1 of GeneSurrounder: network-based identification of disease genes in expression data
Shah, S. D. (Contributor) & Braun, R. I. (Creator), figshare, 2019
DOI: 10.6084/m9.figshare.8088029.v1, https://springernature.figshare.com/articles/Additional_file_1_of_GeneSurrounder_network-based_identification_of_disease_genes_in_expression_data/8088029/1
Dataset
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Additional file 19 of Quantitative analysis of transcriptome dynamics provides novel insights into developmental state transitions
Johnson, K. (Creator), Freedman, S. (Creator), Braun, R. I. (Creator) & LaBonne, C. (Creator), figshare, 2022
DOI: 10.6084/m9.figshare.21384437.v1, https://springernature.figshare.com/articles/dataset/Additional_file_19_of_Quantitative_analysis_of_transcriptome_dynamics_provides_novel_insights_into_developmental_state_transitions/21384437/1
Dataset
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Additional file 16 of Quantitative analysis of transcriptome dynamics provides novel insights into developmental state transitions
Johnson, K. (Creator), Freedman, S. (Creator), Braun, R. I. (Creator) & LaBonne, C. (Creator), figshare, 2022
DOI: 10.6084/m9.figshare.21384428.v1, https://springernature.figshare.com/articles/dataset/Additional_file_16_of_Quantitative_analysis_of_transcriptome_dynamics_provides_novel_insights_into_developmental_state_transitions/21384428/1
Dataset