Susan E Clare

  • 3140 Citations
1981 …2020
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Research Output 1981 2019

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Article
2019

Cancer classification and pathway discovery using non-negative matrix factorization

Zeng, Z., Vo, A. H., Mao, C., Clare, S. E., Khan, S. A. & Luo, Y., Aug 1 2019, In : Journal of Biomedical Informatics. 96, 103247.

Research output: Contribution to journalArticle

Factorization
Mutation
Neoplasms
Classifiers
Support vector machines
2018
1 Citation (Scopus)

Mechanism of Telapristone Acetate (CDB4124) on Progesterone Receptor Action in Breast Cancer Cells

Davaadelger, B., Murphy, A. R., Clare, S. E., Lee, O., Khan, S. A. & Kim, J. J., Oct 1 2018, In : Endocrinology. 159, 10, p. 3581-3595 15 p.

Research output: Contribution to journalArticle

Progesterone Receptors
Breast Neoplasms
Promegestone
Progesterone
telapristone acetate
4 Citations (Scopus)

Pixelated spatial gene expression analysis from tissue

Ganguli, A., Ornob, A., Spegazzini, N., Liu, Y., Damhorst, G., Ghonge, T., Thornton, B., Konopka, C. J., Dobrucki, W., Clare, S. E., Bhargava, R., Smith, A. M., Kosari, F. & Bashir, R., Dec 1 2018, In : Nature communications. 9, 1, 202.

Research output: Contribution to journalArticle

gene expression
Gene expression
Tissue
Gene Expression
ribonucleic acids
3 Citations (Scopus)

Social Network, Surgeon, and Media Influence on the Decision to Undergo Contralateral Prophylactic Mastectomy

Venetis, M. K., MacGeorge, E. L., Baptiste, D. F., Mouton, A., Friley, L. B., Pastor, R., Hatten, K., Lagoo, J., Bowling, M. W. & Clare, S. E., Jan 1 2018, In : American Journal of Clinical Oncology: Cancer Clinical Trials. 41, 6, p. 519-525 7 p.

Research output: Contribution to journalArticle

Social Media
Social Support
Prophylactic Mastectomy
Surgeons
Family Health
4 Citations (Scopus)

Using natural language processing and machine learning to identify breast cancer local recurrence

Zeng, Z., Espino, S., Roy, A., Li, X., Khan, S. A., Clare, S. E., Jiang, X., Neapolitan, R. E. & Luo, Y., Dec 28 2018, In : BMC bioinformatics. 19, 498.

Research output: Contribution to journalArticle

Natural Language Processing
Breast Cancer
Recurrence
Natural Language
Learning systems
2017
4 Citations (Scopus)

Association between breast cancer genetic susceptibility variants and terminal duct lobular unit involution of the breast

Bodelon, C., Oh, H., Chatterjee, N., Garcia-Closas, M., Palakal, M., Sherman, M. E., Pfeiffer, R. M., Geller, B. M., Vacek, P. M., Weaver, D. L., Chicoine, R. E., Papathomas, D., Xiang, J., Patel, D. A., Khodr, Z. G., Linville, L., Clare, S. E., Visscher, D. W., Mies, C., Hewitt, S. M. & 6 others, Brinton, L. A., Storniolo, A. M., He, C., Chanock, S. J., Gierach, G. L. & Figueroa, J. D., Feb 15 2017, In : International Journal of Cancer. 140, 4, p. 825-832 8 p.

Research output: Contribution to journalArticle

Genetic Predisposition to Disease
Single Nucleotide Polymorphism
Breast
Breast Neoplasms
Alleles
4 Citations (Scopus)

Contralateral Breast Cancer Event Detection Using Nature Language Processing

Zeng, Z., Li, X., Espino, S., Roy, A., Kitsch, K., Clare, S. E., Khan, S. A. & Luo, Y., Jan 1 2017, In : AMIA ... Annual Symposium proceedings. AMIA Symposium. 2017, p. 1885-1892 8 p.

Research output: Contribution to journalArticle

Language
Breast Neoplasms
Pathology
Area Under Curve
Cohort Studies
7 Citations (Scopus)

Motivations for contralateral prophylactic mastectomy as a function of socioeconomic status

Baptiste, D. F., MacGeorge, E. L., Venetis, M. K., Mouton, A., Friley, L. B., Pastor, R., Hatten, K., Lagoo, J., Clare, S. E. & Bowling, M. W., Feb 1 2017, In : BMC Women's Health. 17, 1, 10.

Research output: Contribution to journalArticle

Social Class
Motivation
Demography
Therapeutics
Prophylactic Mastectomy
17 Citations (Scopus)

Near-infrared remotely triggered drug-release strategies for cancer treatment

Goodman, A. M., Neumann, O., Nørregaard, K., Henderson, L., Choi, M. R., Clare, S. E. & Halas, N. J., Nov 21 2017, In : Proceedings of the National Academy of Sciences of the United States of America. 114, 47, p. 12419-12424 6 p.

Research output: Contribution to journalArticle

Nanoshells
docetaxel
Lasers
Pharmaceutical Preparations
Neoplasms
43 Citations (Scopus)

Understanding Resonant Light-Triggered DNA Release from Plasmonic Nanoparticles

Goodman, A. M., Hogan, N. J., Gottheim, S., Li, C., Clare, S. E. & Halas, N. J., Jan 24 2017, In : ACS Nano. 11, 1, p. 171-179 9 p.

Research output: Contribution to journalArticle

DNA
deoxyribonucleic acid
Nanoparticles
nanoparticles
Infrared radiation
2016
3 Citations (Scopus)

Ages at menarche- and menopause-related genetic variants in relation to terminal duct lobular unit involution in normal breast tissue

Oh, H., Bodelon, C., Palakal, M., Chatterjee, N., Sherman, M. E., Linville, L., Geller, B. M., Vacek, P. M., Weaver, D. L., Chicoine, R. E., Papathomas, D., Patel, D. A., Xiang, J., Clare, S. E., Visscher, D. W., Mies, C., Hewitt, S. M., Brinton, L. A., Storniolo, A. M. V., He, C. & 4 others, Garcia-Closas, M., Chanock, S. J., Gierach, G. L. & Figueroa, J. D., Jul 1 2016, In : Breast Cancer Research and Treatment. 158, 2, p. 341-350 10 p.

Research output: Contribution to journalArticle

Menarche
Menopause
Single Nucleotide Polymorphism
Breast
Genome-Wide Association Study
1 Citation (Scopus)

Optical dosimetry probes to validate Monte Carlo and empirical-method-based NIR dose planning in the brain

Verleker, A. P., Shaffer, M., Fang, Q., Choi, M. R., Clare, S. E. & Stantz, K. M., Dec 1 2016, In : Applied optics. 55, 34, p. 9875-9888 14 p.

Research output: Contribution to journalArticle

Dosimetry
dosimeters
brain
planning
Brain
5 Citations (Scopus)

Progesterone receptor blockade in human breast cancer cells decreases cell cycle progression through G2/M by repressing G2/M genes

Clare, S. E., Gupta, A., Choi, M. R., Ranjan, M., Lee, O., Wang, J., Ivancic, D. Z., Kim, J. J. & Khan, S. A., May 23 2016, In : BMC cancer. 16, 1, 326.

Research output: Contribution to journalArticle

Progesterone Receptors
Progesterone
Cell Cycle
Breast Neoplasms
Gene Expression
2015
2 Citations (Scopus)

Motivations, concerns, and experiences of women who donate normal breast tissue

Doherty, E. F., MacGeorge, E. L., Gillig, T. & Clare, S. E., Jan 1 2015, In : Cancer Epidemiology Biomarkers and Prevention. 24, 1, p. 105-110 6 p.

Research output: Contribution to journalArticle

Motivation
Breast
Tissue Donors
Tissue Banks
Survivors
2014
17 Citations (Scopus)

Characterizing the heterogeneity of triple-negative breast cancers using microdissected normal ductal epithelium and RNA-sequencing

Radovich, M., Clare, S. E., Atale, R., Pardo, I., Hancock, B. A., Solzak, J. P., Kassem, N., Mathieson, T., Storniolo, A. M. V., Rufenbarger, C., Lillemoe, H. A., Blosser, R. J., Choi, M. R., Sauder, C. A., Doxey, D., Henry, J. E., Hilligoss, E. E., Sakarya, O., Hyland, F. C., Hickenbotham, M. & 7 others, Zhu, J., Glasscock, J., Badve, S., Ivan, M., Liu, Y., Sledge, G. W. & Schneider, B. P., Jan 1 2014, In : Breast Cancer Research and Treatment. 143, 1, p. 57-68 12 p.

Research output: Contribution to journalArticle

Triple Negative Breast Neoplasms
RNA Sequence Analysis
Epithelium
Healthy Volunteers
Tissue Banks
11 Citations (Scopus)

Circulating sex hormones and terminal duct lobular unit involution of the normal breast

Khodr, Z. G., Sherman, M. E., Pfeiffer, R. M., Gierach, G. L., Brinton, L. A., Falk, R. T., Patel, D. A., Linville, L. M., Papathomas, D., Clare, S. E., Visscher, D. W., Mies, C., Hewitt, S. M., Storniolo, A. M. V., Rosebrock, A., Caban, J. J. & Figueroa, J. D., Dec 1 2014, In : Cancer Epidemiology Biomarkers and Prevention. 23, 12, p. 2765-2773 9 p.

Research output: Contribution to journalArticle

Gonadal Steroid Hormones
Breast
Confidence Intervals
Tissue Banks
Breast Neoplasms
21 Citations (Scopus)

Next-generation transcriptome sequencing of the premenopausal breast epithelium using specimens from a normal human breast tissue bank

Pardo, I., Lillemoe, H. A., Blosser, R. J., Choi, M. R., Sauder, C. A. M., Doxey, D. K., Mathieson, T., Hancock, B. A., Baptiste, D., Atale, R., Hickenbotham, M., Zhu, J., Glasscock, J., Storniolo, A. M. V., Zheng, F., Doerge, RW. W., Liu, Y., Badve, S., Radovich, M. & Clare, S. E., Mar 17 2014, In : Breast Cancer Research. 16, 2, R26.

Research output: Contribution to journalArticle

Tissue Banks
Menstrual Cycle
Transcriptome
Breast
Epithelium
10 Citations (Scopus)

Phenotypic plasticity in normal breast derived epithelial cells

Sauder, C. A. M., Koziel, J. E., Choi, M. R., Fox, M. J., Grimes, B. R., Badve, S., Blosser, R. J., Radovich, M., Lam, C. C., Vaughan, M. B., Herbert, B. S. & Clare, S. E., Jun 10 2014, In : BMC Cell Biology. 15, 1, 20.

Research output: Contribution to journalArticle

Breast
Epithelial Cells
Stromal Cells
Cell Culture Techniques
Tissue Banks
32 Citations (Scopus)

Terminal duct lobular unit involution of the normal breast: Implications for breast cancer etiology

Figueroa, J. D., Pfeiffer, R. M., Patel, D. A., Linville, L., Brinton, L. A., Gierach, G. L., Yang, X. R., Papathomas, D., Visscher, D., Mies, C., Degnim, A. C., Anderson, W. F., Hewitt, S., Khodr, Z. G., Clare, S. E., Storniolo, A. M. & Sherman, M. E., Oct 1 2014, In : Journal of the National Cancer Institute. 106, 10, dju286.

Research output: Contribution to journalArticle

Breast
Breast Neoplasms
Confidence Intervals
Logistic Models
Tissue Banks
2013
71 Citations (Scopus)

Metabolomics approach for predicting response to neoadjuvant chemotherapy for breast cancer

Wei, S., Liu, L., Zhang, J., Bowers, J., Gowda, G. A. N., Seeger, H., Fehm, T., Neubauer, H. J., Vogel, U., Clare, S. E. & Raftery, D., Jan 1 2013, In : Molecular oncology. 7, 3, p. 297-307 11 p.

Research output: Contribution to journalArticle

Metabolomics
Breast Neoplasms
Drug Therapy
Magnetic Resonance Spectroscopy
Clinical Protocols
61 Citations (Scopus)

Potential roles of microRNAs in regulating long intergenic noncoding RNAs

Juan, L., Wang, G., Radovich, M., Schneider, B. P., Clare, S. E., Wang, Y. & Liu, Y., Jan 31 2013, In : BMC Medical Genomics. 6, SUPPL.1, S7.

Research output: Contribution to journalArticle

Long Noncoding RNA
MicroRNAs
Breast Neoplasms
Messenger RNA
Breast
2012
79 Citations (Scopus)

Delivery of nanoparticles to brain metastases of breast cancer using a cellular Trojan horse

Choi, M. R., Bardhan, R., Stanton-Maxey, K. J., Badve, S., Nakshatri, H., Stantz, K. M., Cao, N., Halas, N. J. & Clare, S. E., Dec 1 2012, In : Cancer Nanotechnology. 3, 1-6, p. 47-54 8 p.

Research output: Contribution to journalArticle

metastasis
breast
Nanoparticles
brain
Brain
2011
7 Citations (Scopus)

Central venous port placement: A comparison of axillary versus anterior chest wall placement

Pardo, I., Rager, E. L., Bowling, M. W., Fajardo, A., Clare, S. & Goulet, R., Jan 1 2011, In : Annals of Surgical Oncology. 18, 2, p. 468-471 4 p.

Research output: Contribution to journalArticle

Thoracic Wall
Catheters
Vascular Access Devices
Patient Preference
Electronic Health Records
2010
2 Citations (Scopus)

Compliance differences between patients with breast cancer in university and county hospitals

Komenaka, I., Pennington, R., Schneider, B., Hsu, C. H., Norton, L., Clare, S., Zork, N. & Goulet, R., Oct 1 2010, In : Clinical Breast Cancer. 10, 5, p. 385-391 7 p.

Research output: Contribution to journalArticle

County Hospitals
Compliance
Breast Neoplasms
Patient Compliance
Drug Therapy
60 Citations (Scopus)

Race and ethnicity and breast cancer outcomes in an underinsured population

Komenaka, I. K., Martinez, M. E., Pennington, R. E., Hsu, C. H., Clare, S. E., Thompson, P. A., Murphy, C., Zork, N. M. & Goulet, R. J., Aug 4 2010, In : Journal of the National Cancer Institute. 102, 15, p. 1178-1187 10 p.

Research output: Contribution to journalArticle

African Americans
Breast Neoplasms
Population
Confidence Intervals
Survival
30 Citations (Scopus)

Vapor-phase deposition of monofunctional alkoxysilanes for sub-nanometer-level biointerfacing on silicon oxide surfaces

Dorvel, B., Block, I., Reddy, B., Mathias, P., Clare, S. E., Cunningham, B., Bergstrom, D. E. & Bashir, R., Jan 8 2010, In : Advanced Functional Materials. 20, 1, p. 87-95 9 p.

Research output: Contribution to journalArticle

Silanes
Silicon oxides
silicon oxides
silanes
Monolayers
2008
73 Citations (Scopus)

Breast cancer proteomics reveals correlation between estrogen receptor status and differential phosphorylation of PGRMC1

Neubauer, H., Clare, S. E., Wozny, W., Schwall, G. P., Poznanović, S., Stegmann, W., Vogel, U., Sotlar, K., Wallwiener, D., Kurek, R., Fehm, T. & Cahill, M. A., Oct 15 2008, In : Breast Cancer Research. 10, 5, R85.

Research output: Contribution to journalArticle

Progesterone Receptors
Estrogen Receptors
Proteomics
Phosphorylation
Breast Neoplasms
1100 Citations (Scopus)

Nanoshell-enabled photothermal cancer therapy: Impending clinical impact

Lal, S., Clare, S. E. & Halas, N. J., Dec 16 2008, In : Accounts of Chemical Research. 41, 12, p. 1842-1851 10 p.

Research output: Contribution to journalArticle

Nanoshells
Tumors
Nanoparticles
Blood
Tissue
38 Citations (Scopus)

The effect of dedicated breast surgeons on the short-term outcomes in breast cancer

Zork, N. M., Komenaka, I. K., Pennington, R. E., Bowling, M. W., Norton, L. E., Clare, S. E. & Goulet, R. J., Aug 1 2008, In : Annals of surgery. 248, 2, p. 280-285 6 p.

Research output: Contribution to journalArticle

Breast
Breast Neoplasms
Segmental Mastectomy
Surgeons
County Hospitals
2007
368 Citations (Scopus)

A cellular trojan horse for delivery of therapeutic nanoparticles into tumors

Choi, M. R., Stanton-Maxey, K. J., Stanley, J. K., Levin, C. S., Bardhan, R., Akin, D., Badve, S., Sturgis, J., Robinson, J. P., Bashir, R., Halas, N. J. & Clare, S. E., Dec 1 2007, In : Nano Letters. 7, 12, p. 3759-3765 7 p.

Research output: Contribution to journalArticle

monocytes
Tumors
delivery
tumors
Nanoparticles
410 Citations (Scopus)

NF-κB represses E-cadherin expression and enhances epithelial to mesenchymal transition of mammary epithelial cells: Potential involvement of ZEB-1 and ZEB-2

Chua, H. L., Bhat-Nakshatri, P., Clare, S. E., Morimiya, A., Badve, S. & Nakshatri, H., Feb 1 2007, In : Oncogene. 26, 5, p. 711-724 14 p.

Research output: Contribution to journalArticle

Epithelial-Mesenchymal Transition
NF-kappa B
Cadherins
Breast
Epithelial Cells
2006
7 Citations (Scopus)

A Technique to Prevent Recurrence of Lactiferous Duct Fistula

Komenaka, I. K., Pennington, R. E., Bowling, M. W., Clare, S. E. & Goulet, R. J., Aug 1 2006, In : Journal of the American College of Surgeons. 203, 2, p. 253-256 4 p.

Research output: Contribution to journalArticle

Cutaneous Fistula
Breast Diseases
Nipples
Recurrence
Zuska's Disease
59 Citations (Scopus)

Breast cancer proteomics by laser capture microdissection, sample pooling, 54-cm IPG IEF, and differential iodine radioisotope detection

Neubauer, H., Clare, S. E., Kurek, R., Fehm, T., Wallwiener, D., Sotlar, K., Nordheim, A., Wozny, W., Schwall, G. P., Poznanović, S., Sastri, C., Hunzinger, C., Stegmann, W., Schrattenholz, A. & Cahill, M. A., May 1 2006, In : ELECTROPHORESIS. 27, 9, p. 1840-1852 13 p.

Research output: Contribution to journalArticle

Iodine Radioisotopes
Microdissection
Laser Capture Microdissection
Proteomics
Tumors
166 Citations (Scopus)

Progression-specific genes identified by expression profiling of matched ductal carcinomas in situ and invasive breast tumors, combining laser capture microdissection and oligonucleotide microarray analysis

Schuetz, C. S., Bonin, M., Clare, S. E., Nieselt, K., Sotlar, K., Walter, M., Fehm, T., Solomayer, E., Riess, O., Wallwiener, D., Kurek, R. & Neubauer, H. J., May 15 2006, In : Cancer Research. 66, 10, p. 5278-5286 9 p.

Research output: Contribution to journalArticle

Laser Capture Microdissection
Ductal Carcinoma
Carcinoma, Intraductal, Noninfiltrating
Gene Expression Profiling
Microarray Analysis
2005
5 Citations (Scopus)

Development of a delivery system for the continuous endogenous release of an anti-idiotypic antibody against ovarian carcinoma

Hann, E., Reinartz, S., Clare, S. E., Passow, S., Kissel, T. & Wagner, U., Jan 1 2005, In : Hybridoma. 24, 3, p. 133-140 8 p.

Research output: Contribution to journalArticle

Anti-Idiotypic Antibodies
Carcinoma
Myoblasts
Molecular Weight
CA-125 Antigen
16 Citations (Scopus)

Her-2/neu expression in breast cancer - A comparison of different diagnostic methods

Benöhr, P., Henkel, V., Speer, R., Vogel, U., Sotlar, K., Aydeniz, B., Reiser, A., Neubauer, H., Tabiti, K., Wallwiener, D., Clare, S. E. & Kurek, R., May 1 2005, In : Anticancer Research. 25, 3 B, p. 1895-1900 6 p.

Research output: Contribution to journalArticle

Fluorescence In Situ Hybridization
Real-Time Polymerase Chain Reaction
Immunohistochemistry
Breast Neoplasms
Neoplasms
2002
35 Citations (Scopus)

MMTV-associated transcription factor binding sites increase nm23-H1 metastasis suppressor gene expression in human breast carcinoma cell lines

Ouatas, T., Clare, S. E., Hartsough, M. T., De La Rosa, A. & Steeg, P. S., Mar 20 2002, In : Clinical and Experimental Metastasis. 19, 1, p. 35-42 8 p.

Research output: Contribution to journalArticle

Tumor Suppressor Genes
Transcription Factors
Binding Sites
Reporter Genes
Breast Neoplasms
18 Citations (Scopus)

Primary acinic cell carcinoma of the breast.

Elster, E. A., Markusic, J., Ball, R., Soballe, P., Henry, M., Louie, A. & Clare, S., Nov 1 2002, In : American Surgeon. 68, 11, p. 993-995 3 p.

Research output: Contribution to journalArticle

Acinar Cell Carcinoma
Breast
Salivary Gland Neoplasms
Keratin-7
Neoplasms
2001

Benign breast disease

Priyanath Gupta, A., Didwania, A., Dolan, N. & Clare, S. E., Jan 1 2001, In : Clinics Atlas of Office Procedures. 4, 3, p. 419-430 12 p.

Research output: Contribution to journalArticle

Breast Diseases
82 Citations (Scopus)

Elevation of breast carcinoma Nm23-H1 metastasis suppressor gene expression and reduced motility by DNA methylation inhibition

Hartsough, M. T., Clare, S. E., Mair, M., Elkahloun, A. G., Sgroi, D., Osborne, C. K., Clark, G. & Steeg, P. S., Mar 1 2001, In : Cancer Research. 61, 5, p. 2320-2327 8 p.

Research output: Contribution to journalArticle

DNA Methylation
Tumor Suppressor Genes
CpG Islands
decitabine
Breast Neoplasms

Nipple disease

Nakhlis, F. & Clare, S. E., Jan 1 2001, In : Clinics Atlas of Office Procedures. 4, 3, p. 449-462 14 p.

Research output: Contribution to journalArticle

Nipples
1997
126 Citations (Scopus)

Prognostic significance of occult lymph node metastases in node-negative breast cancer

Clare, S. E., Sener, S. F., Wilkens, W., Goldschmidt, R., Merkel, D. & Winchester, D. J., Jan 1 1997, In : Annals of surgical oncology. 4, 6, p. 447-451 5 p.

Research output: Contribution to journalArticle

Lymph Nodes
Breast Neoplasms
Neoplasm Metastasis
Type I Keratin
Crows
1996

Stereochemical assignment of chiral phosphotriester analogues with alu i sites

Labeots, L. A., Clare, S. E., Ashley, G. W. & Letsinger, R. L., Jan 1 1996, In : Journal of Biomolecular Structure and Dynamics. 14, 1, p. 111-116 6 p.

Research output: Contribution to journalArticle

Protons
DNA
Single-Stranded DNA
Deoxyribonuclease I
DNA Restriction Enzymes
1981
22 Citations (Scopus)

Structural specificities in acylation of hemoglobin and sickle hemoglobin by diaspirins

Wood, L. E., Haney, D. N., Patel, J. R., Clare, S. E., Shi, G. Y., King, L. C. & Klotz, I. M., Dec 1 1981, In : Journal of Biological Chemistry. 256, 13, p. 7046-7052 7 p.

Research output: Contribution to journalArticle

Sickle Hemoglobin
Acylation
Hemoglobin
Hemoglobins
Hemoglobin A