Ulas Bagci

  • Source: Scopus
20052021

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  • 2021

    Interpretable deep model for predicting gene-addicted non-small-cell lung cancer in ct scans

    Pino, C., Palazzo, S., Trenta, F., Cordero, F., Bagci, U., Rundo, F., Battiato, S., Giordano, D., Aldinucci, M. & Spampinato, C., Apr 13 2021, 2021 IEEE 18th International Symposium on Biomedical Imaging, ISBI 2021. IEEE Computer Society, p. 891-894 4 p. 9433832. (Proceedings - International Symposium on Biomedical Imaging; vol. 2021-April).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • No-reference image quality assessment of T2-weighted magnetic resonance images in prostate cancer patients

    Masoudi, S., Harmon, S., Mehralivand, S., Lay, N., Bagci, U., Wood, B. J., Pinto, P. A., Choyke, P. & Turkbey, B., Apr 13 2021, 2021 IEEE 18th International Symposium on Biomedical Imaging, ISBI 2021. IEEE Computer Society, p. 1201-1205 5 p. 9434027. (Proceedings - International Symposium on Biomedical Imaging; vol. 2021-April).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • 2020

    Adipose Tissue Segmentation in Unlabeled Abdomen MRI using Cross Modality Domain Adaptation

    Masoudi, S., Anwar, S. M., Harmon, S. A., Choyke, P. L., Turkbey, B. & Bagci, U., Jul 2020, 42nd Annual International Conferences of the IEEE Engineering in Medicine and Biology Society: Enabling Innovative Technologies for Global Healthcare, EMBC 2020. Institute of Electrical and Electronics Engineers Inc., p. 1624-1628 5 p. 9176009. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS; vol. 2020-July).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    1 Scopus citations
  • A survey on recent advancements for AI enabled radiomics in neuro-oncology

    Anwar, S. M., Altaf, T., Rafique, K., Raviprakash, H., Mohy-Ud-din, H. & Bagci, U., 2020, Radiomics and Radiogenomics in Neuro-oncology - 1st International Workshop, RNO-AI 2019, held in Conjunction with MICCAI 2019, Proceedings. Mohy-ud-Din, H. & Rathore, S. (eds.). Springer, p. 24-35 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11991 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Brain Tumor Survival Prediction Using Radiomics Features

    Yousaf, S., Anwar, S. M., RaviPrakash, H. & Bagci, U., 2020, Machine Learning in Clinical Neuroimaging and Radiogenomics in Neuro-oncology - 3rd International Workshop, MLCN 2020, and Second International Workshop, RNO-AI 2020, Held in Conjunction with MICCAI 2020, Proceedings. Kia, S. M., Mohy-ud-Din, H., Abdulkadir, A., Bass, C., Habes, M., Rondina, J. M., Tax, C., Wang, H., Wolfers, T., Rathore, S. & Ingalhalikar, M. (eds.). Springer Science and Business Media Deutschland GmbH, p. 284-293 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 12449 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Deep Convolutional Neural Network based Classification of Alzheimer's Disease using MRI Data

    Nawaz, A., Anwar, S. M., Liaqat, R., Iqbal, J., Bagci, U. & Majid, M., Nov 5 2020, Proceedings - 2020 23rd IEEE International Multi-Topic Conference, INMIC 2020. Institute of Electrical and Electronics Engineers Inc., 9318172. (Proceedings - 2020 23rd IEEE International Multi-Topic Conference, INMIC 2020).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Deep multi-stage model for automated landmarking of craniomaxillofacial CT scans

    Palazzo, S., Bellitto, G., Prezzavento, L., Rundo, F., Bagci, U., Giordano, D., Leonardi, R. & Spampinato, C., 2020, Proceedings of ICPR 2020 - 25th International Conference on Pattern Recognition. Institute of Electrical and Electronics Engineers Inc., p. 9982-9987 6 p. 9412910. (Proceedings - International Conference on Pattern Recognition).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Deep recurrent-convolutional model for automated segmentation of craniomaxillofacial CT scans

    Murabito, F., Palazzo, S., Salanitri, F. P., Rundo, F., Bagci, U., Giordano, D., Leonardi, R. & Spampinato, C., 2020, Proceedings of ICPR 2020 - 25th International Conference on Pattern Recognition. Institute of Electrical and Electronics Engineers Inc., p. 10644-10649 6 p. 9413084. (Proceedings - International Conference on Pattern Recognition).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Diagnosing Colorectal Polyps in the Wild with Capsule Networks

    Lalonde, R., Kandel, P., Spampinato, C., Wallace, M. B. & Bagci, U., Apr 2020, ISBI 2020 - 2020 IEEE International Symposium on Biomedical Imaging. IEEE Computer Society, p. 1086-1090 5 p. 9098411. (Proceedings - International Symposium on Biomedical Imaging; vol. 2020-April).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    4 Scopus citations
  • Encoding visual attributes in capsules for explainable medical diagnoses

    LaLonde, R., Torigian, D. & Bagci, U., 2020, Medical Image Computing and Computer Assisted Intervention – MICCAI 2020 - 23rd International Conference, Proceedings. Martel, A. L., Abolmaesumi, P., Stoyanov, D., Mateus, D., Zuluaga, M. A., Zhou, S. K., Racoceanu, D. & Joskowicz, L. (eds.). Springer Science and Business Media Deutschland GmbH, p. 294-304 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 12261 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    2 Scopus citations
  • Overall Survival Prediction in Gliomas Using Region-Specific Radiomic Features

    Shaheen, A., Burigat, S., Bagci, U. & Mohy-ud-Din, H., 2020, Machine Learning in Clinical Neuroimaging and Radiogenomics in Neuro-oncology - 3rd International Workshop, MLCN 2020, and Second International Workshop, RNO-AI 2020, Held in Conjunction with MICCAI 2020, Proceedings. Kia, S. M., Mohy-ud-Din, H., Abdulkadir, A., Bass, C., Habes, M., Rondina, J. M., Tax, C., Wang, H., Wolfers, T., Rathore, S. & Ingalhalikar, M. (eds.). Springer Science and Business Media Deutschland GmbH, p. 259-267 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 12449 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    1 Scopus citations
  • State-of-the-Art in Brain Tumor Segmentation and Current Challenges

    Yousaf, S., RaviPrakash, H., Anwar, S. M., Sohail, N. & Bagci, U., 2020, Machine Learning in Clinical Neuroimaging and Radiogenomics in Neuro-oncology - 3rd International Workshop, MLCN 2020, and Second International Workshop, RNO-AI 2020, Held in Conjunction with MICCAI 2020, Proceedings. Kia, S. M., Mohy-ud-Din, H., Abdulkadir, A., Bass, C., Habes, M., Rondina, J. M., Tax, C., Wang, H., Wolfers, T., Rathore, S. & Ingalhalikar, M. (eds.). Springer Science and Business Media Deutschland GmbH, p. 189-198 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 12449 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Variational capsule encoder

    RaviPrakash, H., Anwar, S. M. & Bagci, U., 2020, Proceedings of ICPR 2020 - 25th International Conference on Pattern Recognition. Institute of Electrical and Electronics Engineers Inc., p. 5820-5827 8 p. 9411953. (Proceedings - International Conference on Pattern Recognition).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • 2019

    Classification of Perceived Human Stress using Physiological Signals

    Arsalan, A., Majid, M., Anwar, S. M. & Bagci, U., Jul 2019, 2019 41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2019. Institute of Electrical and Electronics Engineers Inc., p. 1247-1250 4 p. 8856377. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    3 Scopus citations
  • Cross-modality knowledge transfer for prostate segmentation from CT scans

    Liu, Y., Khosravan, N., Liu, Y., Stember, J., Shoag, J., Bagci, U. & Jambawalikar, S., 2019, Domain Adaptation and Representation Transfer and Medical Image Learning with Less Labels and Imperfect Data First MICCAI Workshop, DART 2019 and First International Workshop, MIL3ID 2019 Shenzhen, Held in Conjunction with MICCAI 2019 Shenzhen, 2019 Proceedings. Wang, Q., Milletari, F., Rieke, N., Nguyen, H. V., Roysam, B., Albarqouni, S., Cardoso, M. J., Xu, Z., Kamnitsas, K., Patel, V., Jiang, S., Zhou, K., Luu, K. & Le, N. (eds.). Springer, p. 63-71 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11795 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    6 Scopus citations
  • Deep Learning for Musculoskeletal Image Analysis

    Irmakci, I., Anwar, S. M., Torigian, D. A. & Bagci, U., Nov 2019, Conference Record - 53rd Asilomar Conference on Circuits, Systems and Computers, ACSSC 2019. Matthews, M. B. (ed.). IEEE Computer Society, p. 1481-1485 5 p. 9048671. (Conference Record - Asilomar Conference on Signals, Systems and Computers; vol. 2019-November).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    3 Scopus citations
  • Emotion Classification in Response to Tactile Enhanced Multimedia using Frequency Domain Features of Brain Signals

    Raheel, A., Majid, M., Anwar, S. M. & Bagci, U., Jul 2019, 2019 41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2019. Institute of Electrical and Electronics Engineers Inc., p. 1201-1204 4 p. 8857632. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    7 Scopus citations
  • INN: Inflated Neural Networks for IPMN Diagnosis

    LaLonde, R., Tanner, I., Nikiforaki, K., Papadakis, G. Z., Kandel, P., Bolan, C. W., Wallace, M. B. & Bagci, U., 2019, Medical Image Computing and Computer Assisted Intervention – MICCAI 2019 - 22nd International Conference, Proceedings. Shen, D., Yap, P-T., Liu, T., Peters, T. M., Khan, A., Staib, L. H., Essert, C. & Zhou, S. (eds.). Springer Science and Business Media Deutschland GmbH, p. 101-109 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11768 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    1 Scopus citations
  • MRI-guided, transperineal prostate biopsy using fixed coordinate needle guide: Initial feasibility study

    Kulkarni, P., Sikander, S., Cornnell, H., Burt, J., Laha, S., Biswas, P., Bagci, U. & Song, S. E., 2019, Frontiers in Biomedical Devices, BIOMED - 2019 Design of Medical Devices Conference, DMD 2019. American Society of Mechanical Engineers (ASME), (Frontiers in Biomedical Devices, BIOMED - 2019 Design of Medical Devices Conference, DMD 2019).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    Open Access
  • PAN: Projective Adversarial Network for Medical Image Segmentation

    Khosravan, N., Mortazi, A., Wallace, M. & Bagci, U., 2019, Medical Image Computing and Computer Assisted Intervention – MICCAI 2019 - 22nd International Conference, Proceedings. Shen, D., Yap, P-T., Liu, T., Peters, T. M., Khan, A., Staib, L. H., Essert, C. & Zhou, S. (eds.). Springer Science and Business Media Deutschland GmbH, p. 68-76 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11769 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    8 Scopus citations
  • Weakly Supervised Segmentation by a Deep Geodesic Prior

    Mortazi, A., Khosravan, N., Torigian, D. A., Kurugol, S. & Bagci, U., 2019, Machine Learning in Medical Imaging - 10th International Workshop, MLMI 2019, Held in Conjunction with MICCAI 2019, Proceedings. Suk, H-I., Liu, M., Lian, C. & Yan, P. (eds.). Springer, p. 238-246 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11861 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • 2018

    Automatically designing CNN architectures for medical image segmentation

    Mortazi, A. & Bagci, U., 2018, Machine Learning in Medical Imaging - 9th International Workshop, MLMI 2018, Held in Conjunction with MICCAI 2018, Proceedings. Liu, M., Suk, H-I. & Shi, Y. (eds.). Springer Verlag, p. 98-106 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11046 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    23 Scopus citations
  • Deep multi-modal classification of intraductal papillary mucinous neoplasms (IPMN) with canonical correlation analysis

    Hussein, S., Kandel, P., Corral, J. E., Bolan, C. W., Wallace, M. B. & Bagci, U., May 23 2018, 2018 IEEE 15th International Symposium on Biomedical Imaging, ISBI 2018. IEEE Computer Society, p. 800-804 5 p. (Proceedings - International Symposium on Biomedical Imaging; vol. 2018-April).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    3 Scopus citations
  • How to fool radiologists with generative adversarial networks? A visual turing test for lung cancer diagnosis

    Chuquicusma, M. J. M., Hussein, S., Burt, J. & Bagci, U., May 23 2018, 2018 IEEE 15th International Symposium on Biomedical Imaging, ISBI 2018. IEEE Computer Society, p. 240-244 5 p. (Proceedings - International Symposium on Biomedical Imaging; vol. 2018-April).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    62 Scopus citations
  • Multi-planar deep segmentation networks for cardiac substructures from MRI and CT

    Mortazi, A., Burt, J. & Bagci, U., 2018, Statistical Atlases and Computational Models of the Heart: ACDC and MMWHS Challenges - 8th International Workshop, STACOM 2017, Revised Selected Papers. Bernard, O., Jodoin, P-M., Zhuang, X., Yang, G., Young, A., Sermesant, M., Lalande, A. & Pop, M. (eds.). Springer Verlag, p. 199-206 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10663 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    19 Scopus citations
  • S4ND: Single-shot single-scale lung nodule detection

    Khosravan, N. & Bagci, U., 2018, Medical Image Computing and Computer Assisted Intervention – MICCAI 2018 - 21st International Conference, 2018, Proceedings. Fichtinger, G., Davatzikos, C., Alberola-López, C., Frangi, A. F. & Schnabel, J. A. (eds.). Springer Verlag, p. 794-802 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11071 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    40 Scopus citations
  • Semi-Supervised Multi-Task Learning for Lung Cancer Diagnosis

    Khosravan, N. & Bagci, U., Oct 26 2018, 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2018. Institute of Electrical and Electronics Engineers Inc., p. 710-713 4 p. 8512294. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS; vol. 2018-July).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    18 Scopus citations
  • 2017

    Automatic response assessment in regions of language cortex in epilepsy patients using ecog-based functional mapping and machine learning

    RaviPrakash, H., Korostenskaja, M., Lee, K., Baumgartner, J., Castillo, E. & Bagci, U., Nov 27 2017, 2017 IEEE International Conference on Systems, Man, and Cybernetics, SMC 2017. Institute of Electrical and Electronics Engineers Inc., p. 519-524 6 p. (2017 IEEE International Conference on Systems, Man, and Cybernetics, SMC 2017; vol. 2017-January).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    2 Scopus citations
  • CardiacNET: Segmentation of left atrium and proximal pulmonary veins from MRI using multi-view CNN

    Mortazi, A., Karim, R., Rhode, K., Burt, J. & Bagci, U., 2017, Medical Image Computing and Computer Assisted Intervention − MICCAI 2017 - 20th International Conference, Proceedings. Jannin, P., Duchesne, S., Descoteaux, M., Franz, A., Collins, D. L. & Maier-Hein, L. (eds.). Springer Verlag, p. 377-385 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10434 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    54 Scopus citations
  • Gaze2Segment: A pilot study for integrating eye-tracking technology into medical image segmentation

    Khosravan, N., Celik, H., Turkbey, B., Cheng, R., McCreedy, E., McAuliffe, M., Bednarova, S., Jones, E., Chen, X., Choyke, P., Wood, B. & Bagci, U., 2017, Medical Computer Vision and Bayesian and Graphical Models for Biomedical Imaging - MICCAI 2016 International Workshops, MCV and BAMBI, Revised Selected Papers. Arbel, T., Langs, G., Jenkinson, M., Menze, B., Wells III, W. M., Chung, A. C. S., Kelm, B. M., Cai, W., Montillo, A., Metaxas, D., Cardoso, M. J., Zhang, S., Ribbens, A. & Muller, H. (eds.). Springer Verlag, p. 94-104 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10081 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    8 Scopus citations
  • Risk stratification of lung nodules using 3D CNN-based multi-task learning

    Hussein, S., Cao, K., Song, Q. & Bagci, U., 2017, Information Processing in Medical Imaging - 25th International Conference, IPMI 2017, Proceedings. Zhu, H., Niethammer, M., Styner, M., Zhu, H., Shen, D., Yap, P-T., Aylward, S. & Oguz, I. (eds.). Springer Verlag, p. 249-260 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10265 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    66 Scopus citations
  • Robust and fully automated segmentation of mandible from CT scans

    Torosdagli, N., Liberton, D. K., Verma, P., Sincan, M., Lee, J., Pattanaik, S. & Bagci, U., Jun 15 2017, 2017 IEEE 14th International Symposium on Biomedical Imaging, ISBI 2017. IEEE Computer Society, p. 1209-1212 4 p. 7950734. (Proceedings - International Symposium on Biomedical Imaging).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    12 Scopus citations
  • TumorNet: Lung nodule characterization using multi-view Convolutional Neural Network with Gaussian Process

    Hussein, S., Gillies, R., Cao, K., Song, Q. & Bagci, U., Jun 15 2017, 2017 IEEE 14th International Symposium on Biomedical Imaging, ISBI 2017. IEEE Computer Society, p. 1007-1010 4 p. 7950686. (Proceedings - International Symposium on Biomedical Imaging).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    50 Scopus citations
  • 2016

    Characterization of lung nodule malignancy using hybrid shape and appearance features

    Buty, M., Xu, Z., Gao, M., Bagci, U., Wu, A. & Mollura, D. J., 2016, Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016 - 19th International Conference, Proceedings. Ourselin, S., Joskowicz, L., Sabuncu, M. R., Wells, W. & Unal, G. (eds.). Springer Verlag, p. 662-670 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9900 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    30 Scopus citations
  • 2015

    Highly precise partial volume correction for PET images: An iterative approach via shape consistency

    Xu, Z., Bagci, U., Gao, M. & Mollura, D. J., Jul 21 2015, 2015 IEEE 12th International Symposium on Biomedical Imaging, ISBI 2015. IEEE Computer Society, p. 1196-1199 4 p. 7164087. (Proceedings - International Symposium on Biomedical Imaging; vol. 2015-July).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    3 Scopus citations
  • 2014

    Accurate and efficient separation of left and right lungs from 3D CT scans: A generic hysteresis approach

    Xu, Z., Bagci, U., Jonsson, C., Jain, S. & Mollura, D. J., Nov 2 2014, 2014 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2014. Institute of Electrical and Electronics Engineers Inc., p. 6036-6039 4 p. 6945005. (2014 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2014).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    3 Scopus citations
  • CIDI-lung-seg: A single-click annotation tool for automatic delineation of lungs from CT scans

    Mansoor, A., Bagci, U., Foster, B., Xu, Z., Douglas, D., Solomon, J. M., Udupa, J. K. & Mollura, D. J., Nov 2 2014, 2014 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2014. Institute of Electrical and Electronics Engineers Inc., p. 1087-1090 4 p. 6943783. (2014 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2014).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    3 Scopus citations
  • Efficient ribcage segmentation from CT scans using shape features

    Xu, Z., Bagci, U., Jonsson, C., Jain, S. & Mollura, D. J., Nov 2 2014, 2014 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2014. Institute of Electrical and Electronics Engineers Inc., p. 2899-2902 4 p. 6944229. (2014 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2014).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    7 Scopus citations
  • Near-optimal keypoint sampling for fast pathological lung segmentation

    Mansoor, A., Bagci, U. & Mollura, D. J., Nov 2 2014, 2014 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2014. Institute of Electrical and Electronics Engineers Inc., p. 6032-6035 4 p. 6945004. (2014 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2014).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    7 Scopus citations
  • Optimally stabilized PET image denoising using trilateral filtering

    Mansoor, A., Bagci, U. & Mollura, D. J., 2014, Medical Image Computing and Computer-Assisted Intervention, MICCAI 2014 - 17th International Conference, Proceedings. PART 1 ed. Springer Verlag, p. 130-137 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8673 LNCS, no. PART 1).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    13 Scopus citations
  • Segmentation based denoising of PET images: An iterative approach via regional means and affinity propagation

    Xu, Z., Bagci, U., Seidel, J., Thomasson, D., Solomon, J. & Mollura, D. J., 2014, Medical Image Computing and Computer-Assisted Intervention, MICCAI 2014 - 17th International Conference, Proceedings. PART 1 ed. Springer Verlag, p. 698-705 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8673 LNCS, no. PART 1).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    16 Scopus citations
  • 2013

    A hybrid multi-scale approach to automatic airway tree segmentation from CT scans

    Xu, Z., Bagci, U., Foster, B. & Mollura, D. J., 2013, ISBI 2013 - 2013 IEEE 10th International Symposium on Biomedical Imaging: From Nano to Macro. p. 1308-1311 4 p. 6556772. (Proceedings - International Symposium on Biomedical Imaging).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    11 Scopus citations
  • Denoising PET images using singular value thresholding and Stein's unbiased risk estimate

    Bagci, U. & Mollura, D. J., 2013, Medical Image Computing and Computer-Assisted Intervention, MICCAI 2013 - 16th International Conference, Proceedings. PART 3 ed. p. 115-122 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8151 LNCS, no. PART 3).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    Open Access
    22 Scopus citations
  • Robust segmentation and accurate target definition for positron emission tomography images using Affinity Propagation

    Foster, B., Bagci, U., Luna, B., Dey, B., Bishai, W., Jain, S., Xu, Z. & Mollura, D. J., 2013, ISBI 2013 - 2013 IEEE 10th International Symposium on Biomedical Imaging: From Nano to Macro. IEEE Computer Society, p. 1461-1464 4 p. 6556810. (Proceedings - International Symposium on Biomedical Imaging).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    19 Scopus citations
  • Spatially constrained random walk approach for accurate estimation of airway wall surfaces

    Xu, Z., Bagci, U., Foster, B., Mansoor, A. & Mollura, D. J., 2013, Medical Image Computing and Computer-Assisted Intervention, MICCAI 2013 - 16th International Conference, Proceedings. PART 2 ed. p. 559-566 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8150 LNCS, no. PART 2).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    14 Scopus citations
  • 2012

    A novel spinal vertebrae segmentation framework combining geometric flow and shape prior with level set method

    Lim, P. H., Bagci, U., Aras, O., Wang, Y. & Bai, L., 2012, 2012 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2012 - Proceedings. p. 1703-1706 4 p. 6235907. (Proceedings - International Symposium on Biomedical Imaging).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    4 Scopus citations
  • Automatic quantification of Tree-in-Bud patterns from CT scans

    Bagci, U., Miller-Jaster, K., Yao, J., Wu, A., Caban, J., Olivier, K. N., Aras, O. & Mollura, D. J., 2012, 2012 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2012 - Proceedings. p. 1459-1462 4 p. 6235846. (Proceedings - International Symposium on Biomedical Imaging).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    1 Scopus citations
  • Characterizing non-linear dependencies among pairs of clinical variables and imaging data

    Caban, J. J., Bagci, U., Mehari, A., Alam, S., Fontana, J. R., Kato, G. J. & Mollura, D. J., 2012, 2012 Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2012. p. 2700-2703 4 p. 6346521. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    5 Scopus citations
  • Co-segmentation of functional and anatomical images

    Bagci, U., Udupa, J. K., Yao, J. & Mollura, D. J., 2012, Medical Image Computing and Computer-Assisted Intervention, MICCAI2012 - 15th International Conference, Proceedings. Ayache, N., Delingette, H., Golland, P. & Mori, K. (eds.). Springer Verlag, p. 459-467 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7512 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    Open Access
    28 Scopus citations
  • 2011

    A graph-theoretic approach for segmentation of PET images

    Baǧci, U., Yao, J., Caban, J., Turkbey, E., Aras, O. & Mollura, D. J., 2011, 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS 2011. p. 8479-8482 4 p. 6092092. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    37 Scopus citations