Grants per year
Personal profile
Research Interests
Large numbers of genes turn on and off in temporally and spatially precise patterns in the brain to regulate neural circuit development and refinement. The Yang laboratory is interested in the chromatin mechanisms operating in the nucleus that organize functional neural circuits. We are studying how developmental signals or sensory experience in vivo activate these chromatin mechanisms to orchestrate programs of gene expression in the brain. Our model system is the mouse cerebellum, a hindbrain structure important for motor coordination and motor learning. A major goal is to elucidate how chromatin mechanisms and gene expression networks pattern the neural circuits underlying motor behavior and learning and memory.
The laboratory deploys next-generation molecular neuroscience approaches including epigenetics and chromatin conformation profiling using massive parallel sequencing, single-cell sequencing, and bioinformatics, as well as systems neuroscience tools including optogenetics, in vivo two-photon calcium imaging, and mouse behavior.
Education/Academic qualification
PhD, Harvard Medical School
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Collaborations and top research areas from the last five years
Grants
- 3 Active
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Genetic Underpinnings of ipRGC Diversity
Schmidt, T. M. (PD/PI) & Yang, Y. (Co-Investigator)
9/30/23 → 2/28/27
Project: Research project
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Mechanisms of Genome Architecture Regulation in Motor Learning
Yang, Y. (PD/PI), Yang, Y. (PD/PI), Yamada, T. (Co-Investigator) & Yamada, T. (Co-Investigator)
National Institute of Neurological Disorders and Stroke
7/1/21 → 4/30/26
Project: Research project
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Mechanisms of Genome Organization in Brain Development and Behavior
Yamada, T. (PD/PI), Yamada, T. (PD/PI), Yang, Y. (Co-Investigator) & Yang, Y. (Co-Investigator)
National Institute on Drug Abuse
9/30/20 → 8/31/25
Project: Research project
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Activity-Dependent Chromatin Mechanisms in Cerebellar Motor Learning
Valnegri, P., Yamada, T. & Yang, Y., 2022, Neuromethods. Humana Press Inc., p. 133-148 16 p. (Neuromethods; vol. 177).Research output: Chapter in Book/Report/Conference proceeding › Chapter
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Subtype-specific 3D genome alteration in acute myeloid leukaemia
Xu, J., Song, F., Lyu, H., Kobayashi, M., Zhang, B., Zhao, Z., Hou, Y., Wang, X., Luan, Y., Jia, B., Stasiak, L., Wong, J. H. Y., Wang, Q., Jin, Q., Jin, Q., Fu, Y., Yang, H., Hardison, R. C., Dovat, S. & Platanias, L. C. & 9 others, , Nov 10 2022, In: Nature. 611, 7935, p. 387-398 12 p.Research output: Contribution to journal › Article › peer-review
Open Access78 Scopus citations -
Epigenetic Regulation of the Cerebellum
Yang, Y., Yamada, T. & Bonni, A., Jan 1 2021, Handbook of the Cerebellum and Cerebellar Disorders: Second Edition: Volume 3. Springer International Publishing, p. 409-428 20 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
1 Scopus citations -
The chromatin remodeling enzyme Chd4 regulates genome architecture in the mouse brain
Goodman, J. V., Yamada, T., Yang, Y., Kong, L., Wu, D. Y., Zhao, G., Gabel, H. W. & Bonni, A., Dec 1 2020, In: Nature communications. 11, 1, 3419.Research output: Contribution to journal › Article › peer-review
Open Access35 Scopus citations -
Publisher Correction: Sensory experience remodels genome architecture in neural circuit to drive motor learning (Nature, (2019), 569, 7758, (708-713), 10.1038/s41586-019-1190-7)
Yamada, T., Yang, Y., Valnegri, P., Juric, I., Abnousi, A., Markwalter, K. H., Guthrie, A. N., Godec, A., Oldenborg, A., Hu, M., Holy, T. E. & Bonni, A., Jun 13 2019, In: Nature. 570, 7760, p. E33Research output: Contribution to journal › Comment/debate › peer-review
Open Access