Zhe Ji

  • 1078 Citations
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Personal profile

Training Experience

2017Postdoctoral Fellowship, Harvard Medical School
2017Postdoctoral Fellowship, Broad Institute of MIT and Harvard

Research Interests

Our group uses high-throughput genomic technologies and computational modeling to examine the regulation of gene transcription and RNA translation underlying oncogenic processes. We aim at revealing novel cancer therapeutic strategies for precision medicine and immunotherapy.

Education/Academic qualification

PhD, Rutgers University

… → 2012


  • Gene Regulation
  • Molecular Biology
  • Genomic Medicine/Personalized Medicine
  • Genomics
  • Computational Biology
  • Cancer Biology
  • Inflammation
  • Bioinformatics
  • Systems Biology
  • Pharmacogenomics

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Polyadenylation Medicine & Life Sciences
Long Noncoding RNA Medicine & Life Sciences
3' Untranslated Regions Medicine & Life Sciences
Genes Chemical Compounds
Genome Medicine & Life Sciences
RNA Medicine & Life Sciences
Ribosomes Medicine & Life Sciences
Poly A Medicine & Life Sciences

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Research Output 2008 2018

  • 1078 Citations
  • 23 Article
  • 1 Chapter
  • 1 Comment/debate
1 Citations

Comprehensive comparative analysis of 5′-end RNA-sequencing methods

Adiconis, X., Haber, A. L., Simmons, S. K., Levy Moonshine, A., Ji, Z., Busby, M. A., Shi, X., Jacques, J., Lancaster, M. A., Pan, J. Q., Regev, A. & Levin, J. Z., Jul 1 2018, In : Nature Methods. 15, 7, p. 505-511 7 p.

Research output: Contribution to journalArticle

RNA Sequence Analysis
Gene expression
Transcription Initiation Site

Genome-scale identification of transcription factors that mediate an inflammatory network during breast cellular transformation

Ji, Z., He, L., Rotem, A., Janzer, A., Cheng, C. S., Regev, A. & Struhl, K., Dec 1 2018, In : Nature Communications. 9, 1, 2068

Research output: Contribution to journalArticle

Biological Phenomena
Transcription Factors
Long Noncoding RNA
1 Citations

RibORF: Identifying Genome-Wide Translated Open Reading Frames Using Ribosome Profiling

Ji, Z., Jan 1 2018, (Accepted/In press) In : Current Protocols in Molecular Biology.

Research output: Contribution to journalArticle

Open Reading Frames
Long Noncoding RNA
Biological Phenomena
3 Citations

Distinct regulation of alternative polyadenylation and gene expression by nuclear poly(A) polymerases

Li, W., Li, W., Laishram, R. S., Hoque, M., Ji, Z., Tian, B. & Anderson, R. A., Sep 1 2017, In : Nucleic Acids Research. 45, 15, gkx560

Research output: Contribution to journalArticle

Polynucleotide Adenylyltransferase
Gene Expression
Protein Isoforms
Long Noncoding RNA