Zhe Ji

  • 1018 Citations
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Personal profile

Training Experience

2017Postdoctoral Fellowship, Harvard Medical School
2017Postdoctoral Fellowship, Broad Institute of MIT and Harvard

Research Interests

Our group uses high-throughput genomic technologies and computational modeling to examine the regulation of gene transcription and RNA translation underlying oncogenic processes. We aim at revealing novel cancer therapeutic strategies for precision medicine and immunotherapy.

Education/Academic qualification

PhD, Rutgers University

… → 2012


  • Gene Regulation
  • Molecular Biology
  • Genomic Medicine/Personalized Medicine
  • Genomics
  • Computational Biology
  • Cancer Biology
  • Inflammation
  • Bioinformatics
  • Systems Biology
  • Pharmacogenomics

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Research Output 2008 2018

  • 1018 Citations
  • 20 Article
  • 1 Chapter
  • 1 Comment/debate

Comprehensive comparative analysis of 5′-end RNA-sequencing methods

Adiconis, X., Haber, A. L., Simmons, S. K., Levy Moonshine, A., Ji, Z., Busby, M. A., Shi, X., Jacques, J., Lancaster, M. A., Pan, J. Q., Regev, A. & Levin, J. Z. Jun 4 2018 (Accepted/In press) In : Nature Methods. p. 1-7 7 p.

Research output: Contribution to journalArticle

RNA Sequence Analysis
Thermionic emission
Transcription Initiation Site
Gene Expression
1 Citations

Distinct regulation of alternative polyadenylation and gene expression by nuclear poly(A) polymerases

Li, W., Li, W., Laishram, R. S., Hoque, M., Ji, Z., Tian, B. & Anderson, R. A. Sep 1 2017 In : Nucleic Acids Research. 45, 15, gkx560

Research output: Contribution to journalArticle

Polynucleotide Adenylyltransferase
Gene Expression
Protein Isoforms
Long Noncoding RNA
1 Citations

Genome-wide identification and differential analysis of translational initiation

Zhang, P., He, D., Xu, Y., Hou, J., Pan, B. F., Wang, Y., Liu, T., Davis, C. M., Ehli, E. A., Tan, L., Zhou, F., Hu, J., Yu, Y., Chen, X., Nguyen, T. M., Rosen, J. M., Hawke, D. H., Ji, Z. & Chen, Y. Dec 1 2017 In : Nature Communications. 8, 1, 1749

Research output: Contribution to journalArticle

Long Noncoding RNA
5' Untranslated Regions
Computational efficiency
8 Citations

LINC00520 is induced by Src, STAT3, and PI3K and plays a functional role in breast cancer

Henry, W. S., Hendrickson, D. G., Beca, F., Glass, B., Lindahl-Allen, M., He, L., Ji, Z., Struhl, K., Beck, A. H., Rinn, J. L. & Toker, A. Jan 1 2016 In : Oncotarget. 7, 50, p. 81981-81994 14 p.

Research output: Contribution to journalArticle

Long Noncoding RNA
Phosphatidylinositol 3-Kinases
Breast Neoplasms
Epithelial Cells
20 Citations
Origin Recognition Complex
Binding Sites
Replication Origin