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Transcriptome Profiling of Patient-Specific Human iPSC-Cardiomyocytes Predicts Individual Drug Safety and Efficacy Responses In Vitro
Matsa, E., Burridge, P. W., Yu, K. H., Ahrens, J. H., Termglinchan, V., Wu, H., Liu, C., Shukla, P., Sayed, N., Churko, J. M., Shao, N., Woo, N. A., Chao, A. S., Gold, J. D., Karakikes, I., Snyder, M. P. & Wu, J. C., Sep 1 2016, In: Cell stem cell. 19, 3, p. 311-325 15 p.Research output: Contribution to journal › Article › peer-review
97 Scopus citations -
Transcriptome Quantification and Differential Expression from NGS Data
Glebova, O., Temate-Tiagueu, Y., Caciula, A., Al Seesi, S., Artyomenko, A., Mangul, S., Lindsay, J., Măndoiu, I. I. & Zelikovsky, A., Sep 6 2016, Computational Methods for Next Generation Sequencing Data Analysis. wiley, p. 301-327 27 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
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Transcriptome-scale RNase-footprinting of RNA-protein complexes
Ji, Z., Song, R., Huang, H., Regev, A. & Struhl, K., Apr 1 2016, In: Nature biotechnology. 34, 4, p. 410-413 4 p.Research output: Contribution to journal › Article › peer-review
36 Scopus citations -
Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression
Prensner, J. R., Iyer, M. K., Balbin, O. A., Dhanasekaran, S. M., Cao, Q., Brenner, J. C., Laxman, B., Asangani, I. A., Grasso, C. S., Kominsky, H. D., Cao, X., Jing, X., Wang, X., Siddiqui, J., Wei, J. T., Robinson, D., Iyer, H. K., Palanisamy, N., Maher, C. A. & Chinnaiyan, A. M., Aug 2011, In: Nature biotechnology. 29, 8, p. 742-749 8 p.Research output: Contribution to journal › Article › peer-review
801 Scopus citations -
Transcriptomes of peripheral blood mononuclear cells from juvenile dermatomyositis patients show elevated inflammation even when clinically inactive
Roberson, E. D. O., Mesa, R. A., Morgan, G. A., Cao, L., Marin, W. & Pachman, L. M., Dec 2022, In: Scientific reports. 12, 1, 275.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
Transcriptomes of the parasitic plant family orobanchaceae reveal surprising conservation of chlorophyll synthesis
Wickett, N. J., Honaas, L. A., Wafula, E. K., Das, M., Huang, K., Wu, B., Landherr, L., Timko, M. P., Yoder, J., Westwood, J. H. & Depamphilis, C. W., Dec 20 2011, In: Current Biology. 21, 24, p. 2098-2104 7 p.Research output: Contribution to journal › Article › peer-review
56 Scopus citations -
Transcriptome-Wide Analysis Reveals Modulation of Human Macrophage Inflammatory Phenotype Through Alternative Splicing
Lin, J., Hu, Y., Nunez, S., Foulkes, A. S., Cieply, B., Xue, C., Gerelus, M., Li, W., Zhang, H., Rader, D. J., Musunuru, K., Li, M. & Reilly, M. P., Jul 1 2016, In: Arteriosclerosis, thrombosis, and vascular biology. 36, 7, p. 1434-1447 14 p.Research output: Contribution to journal › Article › peer-review
25 Scopus citations -
Transcriptome-wide association study of schizophrenia and chromatin activity yields mechanistic disease insights
Gusev, A., Mancuso, N., Won, H., Kousi, M., Finucane, H. K., Reshef, Y., Song, L., Safi, A., McCarroll, S., Neale, B. M., Ophoff, R. A., O'Donovan, M. C., Crawford, G. E., Geschwind, D. H., Katsanis, E. N., Sullivan, P. F., Pasaniuc, B. & Price, A. L., Apr 1 2018, In: Nature Genetics. 50, 4, p. 538-548 11 p.Research output: Contribution to journal › Article › peer-review
184 Scopus citations -
Transcriptome-wide changes in gene expression, splicing, and lncRNAs in response to a live attenuated dengue virus vaccine
Kim, E. Y., Che, Y., Dean, H. J., Lorenzo-Redondo, R., Stewart, M., Keller, C. K., Whorf, D., Mills, D., Dulin, N. N., Kim, T., Votoupal, M., Walter, M., Fernandez-Sesma, A., Kim, H. & Wolinsky, S. M., Feb 8 2022, In: Cell reports. 38, 6, 110341.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
Transcriptomic analysis of alveolar immune cells in acute respiratory distress syndrome: To lump or to split?
Walter, J. M. & Reyfman, P. A., Nov 15 2019, In: American journal of respiratory and critical care medicine. 200, 10, p. 1320-1321 2 p.Research output: Contribution to journal › Letter › peer-review
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Transcriptomic Analysis of the Major Orphan Ichthyosis Subtypes Reveals Shared Immune and Barrier Signatures
Kim, M., Mikhaylov, D., Rangel, S. M., Pavel, A. B., He, H., Renert-Yuval, Y., Del Duca, E., Malik, K., Huynh, T., Ibler, E., Sun, M., Zhang, N., Estrada, Y., Krueger, J., Paller, A. S. & Guttman-Yassky, E., 2022, (Accepted/In press) In: Journal of Investigative Dermatology.Research output: Contribution to journal › Article › peer-review
1 Scopus citations -
Transcriptomic analysis of transgressive segregants revealed the central role of photosynthetic capacity and efficiency in biomass accumulation in sugarcane
Singh, R., Jones, T., Wai, C. M., Jifon, J., Nagai, C., Ming, R. & Yu, Q., Dec 1 2018, In: Scientific reports. 8, 1, 4415.Research output: Contribution to journal › Article › peer-review
Open Access12 Scopus citations -
Transcriptomic analysis reveals dynamic molecular changes in skin induced by mechanical forces secondary to tissue expansion
Ledwon, J. K., Kelsey, L. J., Vaca, E. E. & Gosain, A. K., Dec 1 2020, In: Scientific reports. 10, 1, 15991.Research output: Contribution to journal › Article › peer-review
Open Access6 Scopus citations -
Transcriptomic and Clinical Characterization of Neuropeptide Y Expression in Localized and Metastatic Prostate Cancer: Identification of Novel Prostate Cancer Subtype with Clinical Implications
Alshalalfa, M., Nguyen, P. L., Beltran, H., Chen, W. S., Davicioni, E., Zhao, S. G., Rebbeck, T. R., Schaeffer, E. M., Lotan, T. L., Feng, F. Y. & Mahal, B. A., Jul 2019, In: European Urology Oncology. 2, 4, p. 405-412 8 p.Research output: Contribution to journal › Article › peer-review
Open Access9 Scopus citations -
Transcriptomic and protein analysis of small-cell bladder cancer (SCBC) Identifies prognostic biomarkers and DLL3 as a relevant therapeutic target
Koshkin, V. S., Garcia, J. A., Reynolds, J., Elson, P., Magi-Galluzzi, C., McKenney, J. K., Isse, K., Bishop, E., Saunders, L. R., Balyimez, A., Rashid, S., Hu, M., Stephenson, A. J., Fergany, A. F., Lee, B. H., Haber, G. P., Dowlati, A., Gilligan, T., Ornstein, M. C., Rini, B. I., & 3 others , Jan 1 2019, In: Clinical Cancer Research. 25, 1, p. 210-221 12 p.Research output: Contribution to journal › Article › peer-review
Open Access33 Scopus citations -
Transcriptomic changes following valproic acid treatment promote neurogenesis and minimize secondary brain injury
Nikolian, V. C., Dennahy, I. S., Higgins, G. A., Williams, A. M., Weykamp, M., Georgoff, P. E., Eidy, H., Ghandour, M. H., Chang, P. & Alam, H. B., Mar 1 2018, In: Journal of Trauma and Acute Care Surgery. 84, 3, p. 459-465 7 p.Research output: Contribution to journal › Article › peer-review
21 Scopus citations -
Transcriptomic differences in intra-abdominal adipose tissue in extremely obese adolescents with different stages of NAFLD
Sheldon, R. D., Kanosky, K. M., Wells, K. D., Miles, L., Perfield, J. W., Xanthakos, S., Inge, T. H. & Rector, R. S., Dec 2016, In: Physiological genomics. 48, 12, p. 897-911 15 p.Research output: Contribution to journal › Article › peer-review
Open Access5 Scopus citations -
Transcriptomic heterogeneity in multifocal prostate cancer
Salami, S. S., Hovelson, D. H., Kaplan, J. B., Mathieu, R., Udager, A. M., Curci, N. E., Lee, M., Plouffe, K. R., de la Vega, L. L., Susani, M., Rioux-Leclercq, N., Spratt, D. E., Morgan, T. M., Davenport, M. S., Chinnaiyan, A. M., Cyrta, J., Rubin, M. A., Shariat, S. F., Tomlins, S. A. & Palapattu, G. S., Nov 2 2018, In: JCI Insight. 3, 21Research output: Contribution to journal › Article › peer-review
Open Access42 Scopus citations -
Transcriptomic heterogeneity of androgen receptor activity defines a de novo low AR-active subclass in treatment Naïve primary prostate cancer
Spratt, D. E., Alshalalfa, M., Fishbane, N., Weiner, A. B., Mehra, R., Mahal, B. A., Lehrer, J., Liu, Y., Zhao, S. G., Speers, C., Morgan, T. M., Dicker, A. P., Freedland, S. J., Jeffery Karnes, R., Weinmann, S., Davicioni, E., Ross, A. E., Den, R. B., Nguyen, P. L., Feng, F. Y., & 3 others , Nov 15 2019, In: Clinical Cancer Research. 25, 22, p. 6721-6730 10 p.Research output: Contribution to journal › Article › peer-review
Open Access38 Scopus citations -
Transcriptomic Heterogeneity of Favorable-risk Prostate Cancer: Time To Move Past Cancer of the Prostate Risk Assessment (CAPRA) to Clinical-genomic Risk
Spratt, D. E. & Schaeffer, E. M., Oct 2018, In: European urology. 74, 4, p. 453-454 2 p.Research output: Contribution to journal › Editorial › peer-review
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Transcriptomic Heterogeneity of Gleason Grade Group 5 Prostate Cancer[Formula presented]
Kishan, A. U., Romero, T., Alshalalfa, M., Liu, Y., Tran, P. T., Nickols, N. G., Ye, H., Sajed, D., Rettig, M. B., Reiter, R. E., Garraway, I. P., Spratt, D. E., Freedland, S. J., Zhao, X., Li, Z., Deek, M., Livingstone, J., Mahal, B. A., Nguyen, P. L., Feng, F. Y., & 11 others , Sep 2020, In: European urology. 78, 3, p. 327-332 6 p.Research output: Contribution to journal › Article › peer-review
10 Scopus citations -
Transcriptomic Insights into the Life History of Bolidophytes, the Sister Lineage to Diatoms
Kessenich, C. R., Ruck, E. C., Schurko, A. M., Wickett, N. J. & Alverson, A. J., Dec 1 2014, In: Journal of Phycology. 50, 6, p. 977-983 7 p.Research output: Contribution to journal › Article › peer-review
12 Scopus citations -
Transcriptomic Network Interactions in Human Skin Treated with Topical Glucocorticoid Clobetasol Propionate
Lili, L. N., Klopot, A., Readhead, B., Baida, G., Dudley, J. T. & Budunova, I., Nov 2019, In: Journal of Investigative Dermatology. 139, 11, p. 2281-2291 11 p.Research output: Contribution to journal › Article › peer-review
Open Access9 Scopus citations -
Transcriptomic responses in mouse brain exposed to chronic excess of the neurotransmitter glutamate
Wang, X., Bao, X., Pal, R., Agbas, A. & Michaelis, E. K., 2010, In: BMC Genomics. 11, 1, 360.Research output: Contribution to journal › Article › peer-review
Open Access26 Scopus citations -
Transcriptomics: a Solution for Renal Osteodystrophy?
Martin, A. & David, V., Jun 1 2020, In: Current Osteoporosis Reports. 18, 3, p. 254-261 8 p.Research output: Contribution to journal › Review article › peer-review
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Transcriptomic signatures across human tissues identify functional rare genetic variation
TOPMed Lipids Working Group & GTEx Consortium, Sep 11 2020, In: Science. 369, 6509, eaaz5900.Research output: Contribution to journal › Article › peer-review
23 Scopus citations -
Transcriptomic signatures decode Th17 cell pathogenicity
Reyfman, P. A., Bartom, E. T. & Singer, B. D., Sep 1 2016, In: Cellular and Molecular Immunology. 13, 5, p. 557-559 3 p.Research output: Contribution to journal › Comment/debate › peer-review
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Transcriptomic studies in tolerance: Lessons learned and the path forward
Kurian, S. M., Whisenant, T. C., Mathew, J., Miller, J. & Leventhal, J. R., May 2018, In: Human Immunology. 79, 5, p. 395-401 7 p.Research output: Contribution to journal › Review article › peer-review
4 Scopus citations -
Transcriptomic variation of pharmacogenes in multiple human tissues and lymphoblastoid cell lines
Chhibber, A., French, C. E., Yee, S. W., Gamazon, E. R., Theusch, E., Qin, X., Webb, A., Papp, A. C., Wang, A., Simmons, C. Q., Konkashbaev, A., Chaudhry, A. S., Mitchel, K., Stryke, D., Ferrin, T. E., Weiss, S. T., Kroetz, D. L., Sadee, W., Nickerson, D. A., Krauss, R. M., & 7 others , Mar 1 2017, In: Pharmacogenomics Journal. 17, 2, p. 137-145 9 p.Research output: Contribution to journal › Article › peer-review
Open Access16 Scopus citations -
Transcript-specific mRNA trafficking based on the distribution of coexpressed myosin isoforms
Shoemaker, S. D., Ryan, A. F. & Lieber, R. L., 1999, In: Cells Tissues Organs. 165, 1, p. 10-15 6 p.Research output: Contribution to journal › Article › peer-review
8 Scopus citations -
Transcultural differences in suicide attempters: Analysis on a high-risk population of patients with schizophrenia or schizoaffective disorder
Altamura, A. C., Mundo, E., Bassetti, R., Green, A., Lindenmayer, J. P., Alphs, L. & Meltzer, H. Y., Jan 2007, In: Schizophrenia Research. 89, 1-3, p. 140-146 7 p.Research output: Contribution to journal › Article › peer-review
14 Scopus citations -
Transcultural Prefigurations: Reflections on Dynamic Relations between Local Movements and Social Movements
Vossoughi, S. & Booker, A., Sep 2017, In: Anthropology and Education Quarterly. 48, 3, p. 225-228 4 p.Research output: Contribution to journal › Article › peer-review
7 Scopus citations -
Transcutaneous carbon dioxide measurements and maternal pain scores in laboring parturients
Agarwal, D., Wong, C. A. & Toledo, P., Apr 2011, In: International Journal of Obstetric Anesthesia. 20, 2, p. 195-196 2 p.Research output: Contribution to journal › Letter › peer-review
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Transcutaneous Carbon Dioxide Measurements in Women Receiving Intrathecal Morphine for Cesarean Delivery: A Prospective Observational Study
Bauchat, J. R., McCarthy, R., Fitzgerald, P., Kolb, S. & Wong, C. A., Mar 1 2017, In: Anesthesia and analgesia. 124, 3, p. 872-878 7 p.Research output: Contribution to journal › Article › peer-review
16 Scopus citations -
Transcutaneous carbon dioxide monitoring during diabetic ketoacidosis in children and adolescents
McBride, M. E., Berkenbosch, J. W. & Tobias, J. D., 2004, In: Paediatric anaesthesia. 14, 2, p. 167-171 5 p.Research output: Contribution to journal › Article › peer-review
16 Scopus citations -
Transcutaneous electrical nerve stimulator-induced electrocardiogram artifact: A brief report
Sliwa, J. A. & Marinko, M. S., Jul 1 1996, In: American Journal of Physical Medicine and Rehabilitation. 75, 4, p. 307-309 3 p.Research output: Contribution to journal › Article › peer-review
15 Scopus citations -
Transcutaneous glucose sensing by surface-enhanced spatially offset Raman spectroscopy in a rat model
Yuen, J. M., Shah, N. C., Walsh, J. T., Glucksberg, M. R. & Van Duyne, R. P., Oct 15 2010, In: Analytical Chemistry. 82, 20, p. 8382-8385 4 p.Research output: Contribution to journal › Article › peer-review
153 Scopus citations -
Transcutaneous osseointegrated implants for pediatric patients with aural atresia
Lippmann, E., Pritchett, C., Ittner, C. & Hoff, S. R., Aug 2018, In: JAMA Otolaryngology - Head and Neck Surgery. 144, 8, p. 704-709 6 p.Research output: Contribution to journal › Article › peer-review
7 Scopus citations -
Transcutaneous spinal cord stimulation combined with locomotor training to improve walking ability in people with chronic spinal cord injury: study protocol for an international multi-centred double-blinded randomised sham-controlled trial (eWALK)
Bye, E. A., Héroux, M. E., Boswell-Ruys, C. L., Perez, M. A., Purcell, M., Taylor, J., Lee, B. B., McCaughey, E. J., Butler, J. E. & Gandevia, S. C., Jun 2022, In: Spinal Cord. 60, 6, p. 491-497 7 p.Research output: Contribution to journal › Article › peer-review
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trans-Cyclopropyl β-amino acid derivatives via asymmetric cyclopropanation using a (Salen)Ru(II) catalyst
Miller, J. A., Hennessy, E. J., Marshall, W. J., Scialdone, M. A. & Nguyen, S. B. T., Oct 3 2003, In: Journal of Organic Chemistry. 68, 20, p. 7884-7886 3 p.Research output: Contribution to journal › Article › peer-review
50 Scopus citations -
Transcytosis of NgCAM in epithelial cells reflects differential signal recognition on the endocytic and secretory pathways
Anderson, E., Maday, S., Sfakianos, J., Hull, M., Winckler, B., Sheff, D., Fölsch, H. & Mellman, I., Aug 15 2005, In: Journal of Cell Biology. 170, 4, p. 595-605 11 p.Research output: Contribution to journal › Article › peer-review
Open Access40 Scopus citations -
Transdermal dopaminergic D2 receptor agonist therapy in Parkinson's disease with N-0923 TDS: A double-blind, placebo-controlled study
Hutton, J. T., Metman, L. V., Chase, T. N., Juncos, J. L., Koller, W. C., Pahwa, R., LeWitt, P. A., Samii, A., Tsui, J. K. C., Calne, D. B., Waters, C. H., Calabrese, V. P., Bennett, J. P., Barrett, R. & Morris, J. L., May 2001, In: Movement Disorders. 16, 3, p. 459-463 5 p.Research output: Contribution to journal › Article › peer-review
67 Scopus citations -
Transdermal estradiol for postpartum depression: A promising treatment option
Moses-Kolko, E. L., Berga, S. L., Kalro, B., Sit, D. K. Y. & Wisner, K. L., Sep 2009, In: Clinical Obstetrics and Gynecology. 52, 3, p. 516-529 14 p.Research output: Contribution to journal › Review article › peer-review
72 Scopus citations -
Transdermal estradiol treatment during breastfeeding: maternal and infant serum concentrations
Pinheiro, E., Bogen, D. L., Hoxha, D. & Wisner, K. L., Apr 1 2016, In: Archives of Women's Mental Health. 19, 2, p. 409-413 5 p.Research output: Contribution to journal › Article › peer-review
5 Scopus citations -
Transdermal Estradiol Treatment for Postpartum Depression: A Pilot, Randomized Trial
Wisner, K. L., Sit, D. K. Y., Moses-Kolko, E. L., Driscoll, K. E., Prairie, B. A., Stika, C. S., Eng, H. F., Dills, J. L., Luther, J. F. & Wisniewski, S. R., Aug 11 2015, In: Journal of clinical psychopharmacology. 35, 4, p. 389-395 7 p.Research output: Contribution to journal › Article › peer-review
19 Scopus citations -
Transdermal hormone therapy and bone health
Shulman, L. P., Apr 25 2008, In: Clinical Interventions in Aging. 3, 1, p. 51-54 4 p.Research output: Contribution to journal › Review article › peer-review
9 Scopus citations -
Transdermal testosterone administration in women with acquired immunodeficiency syndrome wasting: A pilot study
Miller, K., Corcoran, C., Armstrong, C., Caramelli, K., Anderson, E., Cotton, D., Basgoz, N., Hirschhorn, L., Tuomala, R., Schoenfeld, D., Daugherty, C., Mazer, N. & Grinspoon, S., 1998, In: Journal of Clinical Endocrinology and Metabolism. 83, 8, p. 2717-2725 9 p.Research output: Contribution to journal › Article › peer-review
131 Scopus citations -
Transderm-induced psychosis in Parkinson's disease
Minagar, A., Shulman, L. M., Weiner, W. J. & Attarian, H. P., Jul 22 1999, In: Neurology. 53, 2, p. 433-434 2 p.Research output: Contribution to journal › Article › peer-review
10 Scopus citations -
Transdiagnostic behavioral therapies in pediatric primary care: Looking ahead
Walkup, J. T., Mathews, T. & Green, C. M., Jun 2017, In: JAMA Psychiatry. 74, 6, p. 557-558 2 p.Research output: Contribution to journal › Editorial › peer-review
11 Scopus citations -
Transdiagnostic Dimensions of Psychiatric Comorbidity in Individuals at Clinical High Risk for Psychosis: A Preliminary Study Informed by HiTOP
Cowan, H. R. & Mittal, V. A., Jan 8 2021, In: Frontiers in Psychiatry. 11, 614710.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations