A deletion-generator compound element allows deletion saturation analysis for genomewide phenotypic annotation

François Huet, Jeffrey T. Lu, Kyl V. Myrick, L. Ryan Baugh, Madeline A. Crosby, William M. Gelbart*

*Corresponding author for this work

Research output: Contribution to journalArticle

42 Scopus citations

Abstract

With the available eukaryotic genome sequences, there are predictions of thousands of previously uncharacterized genes without known function or available mutational variant. Thus, there is an urgent need for efficient genetic tools for genomewide phenotypic analysis. Here we describe such a tool: a deletion-generator technology that exploits properties of a double transposable element to produce molecularly defined deletions at high density and with high efficiency. This double element, called P{wHy}, is composed of a "deleter" element hobo, bracketed by two genetic markers and inserted into a "carrier" P element. We have used this P{wHy} element in Drosophila melanogaster to generate sets of nested deletions of sufficient coverage to discriminate among every transcription unit within 60 kb of the starting insertion site. Because these two types of mobile elements, carrier and deleter, can be found in other species, our strategy should be applicable to phenotypic analysis in a variety of model organisms.

Original languageEnglish (US)
Pages (from-to)9948-9953
Number of pages6
JournalProceedings of the National Academy of Sciences of the United States of America
Volume99
Issue number15
DOIs
StatePublished - Jul 23 2002

ASJC Scopus subject areas

  • General

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