A five-level classification system for proteoform identifications

Lloyd M. Smith; Paul M. Thomas; Michael R. Shortreed; Leah V. Schaffer; Ryan T. Fellers; Richard D. LeDuc; Trisha Tucholski; Ying Ge; Jeffrey N. Agar; Lissa C. Anderson; Julia Chamot-Rooke; Joseph Gault; Joseph A. Loo; Ljiljana Paša-Tolić; Carol V. Robinson; Hartmut Schlüter; Yury O. Tsybin; Marta Vilaseca; Juan Antonio Vizcaíno; Paul O. Danis; Neil L. Kelleher

doi:10.1038/s41592-019-0573-x

A five-level classification system for proteoform identifications

Lloyd M. Smith^*, Paul M. Thomas, Michael R. Shortreed, Leah V. Schaffer, Ryan T. Fellers, Richard D. LeDuc, Trisha Tucholski, Ying Ge, Jeffrey N. Agar, Lissa C. Anderson, Julia Chamot-Rooke, Joseph Gault, Joseph A. Loo, Ljiljana Paša-Tolić, Carol V. Robinson, Hartmut Schlüter, Yury O. Tsybin, Marta Vilaseca, Juan Antonio Vizcaíno, Paul O. DanisNeil L. Kelleher

^*Corresponding author for this work

Research output: Contribution to journal › Letter › peer-review

16 Scopus citations

Original language	English (US)
Pages (from-to)	939-940
Number of pages	2
Journal	Nature Methods
Volume	16
Issue number	10
DOIs	https://doi.org/10.1038/s41592-019-0573-x
State	Published - Oct 1 2019

ASJC Scopus subject areas

Biotechnology
Biochemistry
Molecular Biology
Cell Biology

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10.1038/s41592-019-0573-x

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Smith, L. M., Thomas, P. M., Shortreed, M. R., Schaffer, L. V., Fellers, R. T., LeDuc, R. D., Tucholski, T., Ge, Y., Agar, J. N., Anderson, L. C., Chamot-Rooke, J., Gault, J., Loo, J. A., Paša-Tolić, L., Robinson, C. V., Schlüter, H., Tsybin, Y. O., Vilaseca, M., Vizcaíno, J. A., ... Kelleher, N. L. (2019). A five-level classification system for proteoform identifications. Nature Methods, 16(10), 939-940. https://doi.org/10.1038/s41592-019-0573-x

Smith, Lloyd M. ; Thomas, Paul M. ; Shortreed, Michael R. ; Schaffer, Leah V. ; Fellers, Ryan T. ; LeDuc, Richard D. ; Tucholski, Trisha ; Ge, Ying ; Agar, Jeffrey N. ; Anderson, Lissa C. ; Chamot-Rooke, Julia ; Gault, Joseph ; Loo, Joseph A. ; Paša-Tolić, Ljiljana ; Robinson, Carol V. ; Schlüter, Hartmut ; Tsybin, Yury O. ; Vilaseca, Marta ; Vizcaíno, Juan Antonio ; Danis, Paul O. ; Kelleher, Neil L. / A five-level classification system for proteoform identifications. In: Nature Methods. 2019 ; Vol. 16, No. 10. pp. 939-940.

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title = "A five-level classification system for proteoform identifications",

author = "Smith, {Lloyd M.} and Thomas, {Paul M.} and Shortreed, {Michael R.} and Schaffer, {Leah V.} and Fellers, {Ryan T.} and LeDuc, {Richard D.} and Trisha Tucholski and Ying Ge and Agar, {Jeffrey N.} and Anderson, {Lissa C.} and Julia Chamot-Rooke and Joseph Gault and Loo, {Joseph A.} and Ljiljana Pa{\v s}a-Toli{\'c} and Robinson, {Carol V.} and Hartmut Schl{\"u}ter and Tsybin, {Yury O.} and Marta Vilaseca and Vizca{\'i}no, {Juan Antonio} and Danis, {Paul O.} and Kelleher, {Neil L.}",

note = "Funding Information: This work was supported by grants R35 GM126914 (to L.M.S.) and P41 GM108569 (to N.L.K.) from the NIH National Institute of General Medical Sciences, R21 LM013097 (to P.M.T.) from the National Library of Medicine, and the Sherman Fairchild Foundation (to N.L.K.).",

year = "2019",

month = oct,

day = "1",

doi = "10.1038/s41592-019-0573-x",

language = "English (US)",

volume = "16",

pages = "939--940",

journal = "Nature Methods",

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Smith, LM, Thomas, PM, Shortreed, MR, Schaffer, LV, Fellers, RT, LeDuc, RD, Tucholski, T, Ge, Y, Agar, JN, Anderson, LC, Chamot-Rooke, J, Gault, J, Loo, JA, Paša-Tolić, L, Robinson, CV, Schlüter, H, Tsybin, YO, Vilaseca, M, Vizcaíno, JA, Danis, PO & Kelleher, NL 2019, 'A five-level classification system for proteoform identifications', Nature Methods, vol. 16, no. 10, pp. 939-940. https://doi.org/10.1038/s41592-019-0573-x

A five-level classification system for proteoform identifications. / Smith, Lloyd M.; Thomas, Paul M.; Shortreed, Michael R.; Schaffer, Leah V.; Fellers, Ryan T.; LeDuc, Richard D.; Tucholski, Trisha; Ge, Ying; Agar, Jeffrey N.; Anderson, Lissa C.; Chamot-Rooke, Julia; Gault, Joseph; Loo, Joseph A.; Paša-Tolić, Ljiljana; Robinson, Carol V.; Schlüter, Hartmut; Tsybin, Yury O.; Vilaseca, Marta; Vizcaíno, Juan Antonio; Danis, Paul O.; Kelleher, Neil L.

In: Nature Methods, Vol. 16, No. 10, 01.10.2019, p. 939-940.

Research output: Contribution to journal › Letter › peer-review

TY - JOUR

T1 - A five-level classification system for proteoform identifications

AU - Smith, Lloyd M.

AU - Thomas, Paul M.

AU - Shortreed, Michael R.

AU - Schaffer, Leah V.

AU - Fellers, Ryan T.

AU - LeDuc, Richard D.

AU - Tucholski, Trisha

AU - Ge, Ying

AU - Agar, Jeffrey N.

AU - Anderson, Lissa C.

AU - Chamot-Rooke, Julia

AU - Gault, Joseph

AU - Loo, Joseph A.

AU - Paša-Tolić, Ljiljana

AU - Robinson, Carol V.

AU - Schlüter, Hartmut

AU - Tsybin, Yury O.

AU - Vilaseca, Marta

AU - Vizcaíno, Juan Antonio

AU - Danis, Paul O.

AU - Kelleher, Neil L.

N1 - Funding Information: This work was supported by grants R35 GM126914 (to L.M.S.) and P41 GM108569 (to N.L.K.) from the NIH National Institute of General Medical Sciences, R21 LM013097 (to P.M.T.) from the National Library of Medicine, and the Sherman Fairchild Foundation (to N.L.K.).

PY - 2019/10/1

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U2 - 10.1038/s41592-019-0573-x

DO - 10.1038/s41592-019-0573-x

M3 - Letter

C2 - 31451767

AN - SCOPUS:85071154440

VL - 16

SP - 939

EP - 940

JO - Nature Methods

JF - Nature Methods

SN - 1548-7091

IS - 10

ER -

A five-level classification system for proteoform identifications

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