An anatomy ontology to represent biological knowledge in Dictyostelium discoideum

Pascale Gaudet*, Jeffery G. Williams, Petra Fey, Rex L. Chisholm

*Corresponding author for this work

Research output: Contribution to journalArticlepeer-review

28 Scopus citations

Abstract

Background: Dictyostelium discoideum is a model system for studying many important physiological processes including chemotaxis, phagocytosis, and signal transduction. The recent sequencing of the genome has revealed the presence of over 12,500 protein-coding genes. The model organism database dictyBase hosts the genome sequence as well as a large amount of manually curated information. Results: We present here an anatomy ontology for Dictyostelium based upon the life cycle of the organism. Conclusion: Anatomy ontologies are necessary to annotate species-specific events such as phenotypes, and the Dictyostelium anatomy ontology provides an essential tool for curation of the Dictyostelium genome.

Original languageEnglish (US)
Article number130
JournalBMC Genomics
Volume9
DOIs
StatePublished - Mar 18 2008

ASJC Scopus subject areas

  • Biotechnology
  • Genetics

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