An automated pipeline for the collection, transfer, and processing of large-scale tomography data

Ming Du*, Rafael Vescovi, Ryan Chard, Narayanan Kasthuri, Chris Jacobsen, Eva Dyer, Dogˇa Gu¨rsoy

*Corresponding author for this work

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Abstract

We introduce an automated and scalable data collection, transfer, and processing pipeline for tomographic measurement of centimeter-sized mouse brains with sub-micrometer resolution. Parallelized computation is implemented in data processing to allow fast handling of tera-voxel sized datasets.

Original languageEnglish (US)
Title of host publicationOptics and the Brain, BRAIN 2018
PublisherOSA - The Optical Society
ISBN (Electronic)9781557528209
DOIs
StatePublished - Jan 1 2018
EventOptics and the Brain, BRAIN 2018 - Hollywood, United States
Duration: Apr 3 2018Apr 6 2018

Publication series

NameOptics InfoBase Conference Papers
VolumePart F88-BRAIN 2018

Other

OtherOptics and the Brain, BRAIN 2018
Country/TerritoryUnited States
CityHollywood
Period4/3/184/6/18

ASJC Scopus subject areas

  • Electronic, Optical and Magnetic Materials
  • Mechanics of Materials

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