An automated pipeline for the collection, transfer, and processing of large-scale tomography data

Ming Du*, Rafael Vescovi, Ryan Chard, Narayanan Kasthuri, Chris Jacobsen, Eva Dyer, Dogˇa Gu¨rsoy

*Corresponding author for this work

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Citation (Scopus)

Abstract

We introduce an automated and scalable data collection, transfer, and processing pipeline for tomographic measurement of centimeter-sized mouse brains with sub-micrometer resolution. Parallelized computation is implemented in data processing to allow fast handling of tera-voxel sized datasets.

Original languageEnglish (US)
Title of host publicationOptics and the Brain, BRAIN 2018
PublisherOSA - The Optical Society
VolumePart F88-BRAIN 2018
ISBN (Electronic)9781557528209
DOIs
StatePublished - Jan 1 2018
EventOptics and the Brain, BRAIN 2018 - Hollywood, United States
Duration: Apr 3 2018Apr 6 2018

Other

OtherOptics and the Brain, BRAIN 2018
CountryUnited States
CityHollywood
Period4/3/184/6/18

Fingerprint

Tomography
Brain
Pipelines
Processing

ASJC Scopus subject areas

  • Electronic, Optical and Magnetic Materials
  • Mechanics of Materials

Cite this

Du, M., Vescovi, R., Chard, R., Kasthuri, N., Jacobsen, C., Dyer, E., & Gu¨rsoy, D. (2018). An automated pipeline for the collection, transfer, and processing of large-scale tomography data. In Optics and the Brain, BRAIN 2018 (Vol. Part F88-BRAIN 2018). OSA - The Optical Society. https://doi.org/10.1364/BRAIN.2018.BF4C.2
Du, Ming ; Vescovi, Rafael ; Chard, Ryan ; Kasthuri, Narayanan ; Jacobsen, Chris ; Dyer, Eva ; Gu¨rsoy, Dogˇa. / An automated pipeline for the collection, transfer, and processing of large-scale tomography data. Optics and the Brain, BRAIN 2018. Vol. Part F88-BRAIN 2018 OSA - The Optical Society, 2018.
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Du, M, Vescovi, R, Chard, R, Kasthuri, N, Jacobsen, C, Dyer, E & Gu¨rsoy, D 2018, An automated pipeline for the collection, transfer, and processing of large-scale tomography data. in Optics and the Brain, BRAIN 2018. vol. Part F88-BRAIN 2018, OSA - The Optical Society, Optics and the Brain, BRAIN 2018, Hollywood, United States, 4/3/18. https://doi.org/10.1364/BRAIN.2018.BF4C.2

An automated pipeline for the collection, transfer, and processing of large-scale tomography data. / Du, Ming; Vescovi, Rafael; Chard, Ryan; Kasthuri, Narayanan; Jacobsen, Chris; Dyer, Eva; Gu¨rsoy, Dogˇa.

Optics and the Brain, BRAIN 2018. Vol. Part F88-BRAIN 2018 OSA - The Optical Society, 2018.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

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AU - Gu¨rsoy, Dogˇa

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Du M, Vescovi R, Chard R, Kasthuri N, Jacobsen C, Dyer E et al. An automated pipeline for the collection, transfer, and processing of large-scale tomography data. In Optics and the Brain, BRAIN 2018. Vol. Part F88-BRAIN 2018. OSA - The Optical Society. 2018 https://doi.org/10.1364/BRAIN.2018.BF4C.2