An Information-Based Approach for Mediation Analysis on High-Dimensional Metagenomic Data

Kyle M. Carter, Meng Lu, Hongmei Jiang, Lingling An*

*Corresponding author for this work

Research output: Contribution to journalArticle

Abstract

The human microbiome plays a critical role in the development of gut-related illnesses such as inflammatory bowel disease and clinical pouchitis. A mediation model can be used to describe the interaction between host gene expression, the gut microbiome, and clinical/health situation (e.g., diseased or not, inflammation level) and may provide insights into underlying disease mechanisms. Current mediation regression methodology cannot adequately model high-dimensional exposures and mediators or mixed data types. Additionally, regression based mediation models require some assumptions for the model parameters, and the relationships are usually assumed to be linear and additive. With the microbiome being the mediators, these assumptions are violated. We propose two novel nonparametric procedures utilizing information theory to detect significant mediation effects with high-dimensional exposures and mediators and varying data types while avoiding standard regression assumptions. Compared with available methods through comprehensive simulation studies, the proposed method shows higher power and lower error. The innovative method is applied to clinical pouchitis data as well and interesting results are obtained.

Original languageEnglish (US)
Article number148
JournalFrontiers in Genetics
Volume11
DOIs
StatePublished - Mar 13 2020

Keywords

  • high-dimension
  • host genome
  • information
  • mediation analysis
  • microbiome
  • nonparametric

ASJC Scopus subject areas

  • Molecular Medicine
  • Genetics
  • Genetics(clinical)

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