Charged vs. neutral nucleobase loss from multiply charged oligonucleotide anions

Scott A. McLuckey*, Gopalakrishnan Vaidyanathan, Sohrab Habibi‐Goudarzi

*Corresponding author for this work

Research output: Contribution to journalArticlepeer-review

68 Scopus citations

Abstract

Tandem mass spectra of a variety of adenine‐containing deoxynucleic acid anions obtained using collisional activation in a quadrupole ion trap are described. Data are reported for singly charged mono‐, di‐ and trinucleotide species, and also for multiply charged anions derived from tri‐, tetra‐, penta‐ and hexanucleotides. Attention is focused on the first step in the unimolecular decomposition of these species, namely the loss of the nucleobase. Specifically, the competition between the loss of the nucleobase as a neutral versus its loss as an anion is addressed within the context of a proposed proton‐bound intermediate consisting of the nucleobase and a phosphodiester linkage. The data are interpreted on the basis of the energy surface involved in the break‐up of the proton‐bound intermediate, which can explain why the competition between loss of a neutral versus charged base is strongly dependent upon the charge of the parent ion.

Original languageEnglish (US)
Pages (from-to)1222-1229
Number of pages8
JournalJournal of Mass Spectrometry
Volume30
Issue number9
DOIs
StatePublished - Jan 1 1995

ASJC Scopus subject areas

  • Spectroscopy

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