Abstract
Nonmalignant (n = 36) and malignant (n = 20) tissue samples were obtained from breast cancer and breast reduction surgeries. These tissues were characterized using multiple excitation wavelength fluorescence spectroscopy and diffuse reflectance spectroscopy in the ultraviolet-visible wavelength range, immediately after excision. Spectra were then analyzed using principal component analysis (PCA) as a data reduction technique. PCA was performed on each fluorescence spectrum, as well as on the diffuse reflectance spectrum individually, to establish a set of principal components for each spectrum. A Wilcoxon rank-sum test was used to determine which principal components show statistically significant differences between malignant and nonmalignant tissues. Finally, a support vector machine (SVM) algorithm was utilized to classify the samples based on the diagnostically useful principal components. Cross-validation of this nonparametric algorithm was carried out to determine its classification accuracy in an unbiased manner. Multiexcitation fluorescence spectroscopy was successful in discriminating malignant and nonmalignant tissues, with a sensitivity and specificity of 70% and 92%, respectively. The sensitivity (30%) and specificity (78%) of diffuse reflectance spectroscopy alone was significantly lower. Combining fluorescence and diffuse reflectance spectra did not improve the classification accuracy of an algorithm based on fluorescence spectra alone. The fluorescence excitation-emission wavelengths identified as being diagnostic from the PCA-SVM algorithm suggest that the important fluorophores for breast cancer diagnosis are most likely tryptophan, NAD(P)H and flavoproteins.
Original language | English (US) |
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Pages (from-to) | 1233-1242 |
Number of pages | 10 |
Journal | IEEE Transactions on Biomedical Engineering |
Volume | 50 |
Issue number | 11 |
DOIs | |
State | Published - Nov 2003 |
Externally published | Yes |
Funding
Manuscript received November 13, 2002; revised March 1, 2003. This work was supported by the Whitaker Foundation and the U.S. Department of Defense Breast Cancer Research Project. Asterisk indicates corresponding author. G. M. Palmer is with the Department of Biomedical Engineering at the University of Wisconsin, Madison, WI 53706 USA (e-mail: [email protected]). C. Zhu is with the Department of Electrical and Computer Engineering at the University of Wisconsin, Madison, WI 53706 USA (e-mail: [email protected]). F. Xu and K. W. Gilchrist are with the Department of Pathology at the University of Wisconsin Medical School, WI 53706 USA (e-mail: [email protected]; [email protected]). T. M. Breslin is with the Department of Surgery at the University of Wisconsin School of Medicine, WI 53706 USA (e-mail: [email protected]). *N. Ramanujam are with the Department of Biomedical Engineering at the University of Wisconsin, Madison, WI 53706 USA (e-mail: [email protected]). Digital Object Identifier 10.1109/TBME.2003.818488
Keywords
- Breast cancer
- Fluorescence
- Reflectance
- Spectroscopy
ASJC Scopus subject areas
- Biomedical Engineering