Correction of respiratory artifacts in MRI head motion estimates

Damien A. Fair; Oscar Miranda-Dominguez; Abraham Z. Snyder; Anders Perrone; Eric A. Earl; Andrew N. Van; Jonathan M. Koller; Eric Feczko; M. Dylan Tisdall; Andre van der Kouwe; Rachel L. Klein; Amy E. Mirro; Jacqueline M. Hampton; Babatunde Adeyemo; Timothy O. Laumann; Caterina Gratton; Deanna J. Greene; Bradley L. Schlaggar; Donald J. Hagler; Richard Watts; Hugh Garavan; Deanna M. Barch; Joel T. Nigg; Steven E. Petersen; Anders M. Dale; Sarah W. Feldstein-Ewing; Bonnie J. Nagel; Nico U.F. Dosenbach

doi:10.1016/j.neuroimage.2019.116400

Correction of respiratory artifacts in MRI head motion estimates

Damien A. Fair^*, Oscar Miranda-Dominguez, Abraham Z. Snyder, Anders Perrone, Eric A. Earl, Andrew N. Van, Jonathan M. Koller, Eric Feczko, M. Dylan Tisdall, Andre van der Kouwe, Rachel L. Klein, Amy E. Mirro, Jacqueline M. Hampton, Babatunde Adeyemo, Timothy O. Laumann, Caterina Gratton, Deanna J. Greene, Bradley L. Schlaggar, Donald J. Hagler, Richard WattsHugh Garavan, Deanna M. Barch, Joel T. Nigg, Steven E. Petersen, Anders M. Dale, Sarah W. Feldstein-Ewing, Bonnie J. Nagel, Nico U.F. Dosenbach

^*Corresponding author for this work

Psychology

Research output: Contribution to journal › Article › peer-review

136 Scopus citations

Abstract

Head motion represents one of the greatest technical obstacles in magnetic resonance imaging (MRI) of the human brain. Accurate detection of artifacts induced by head motion requires precise estimation of movement. However, head motion estimates may be corrupted by artifacts due to magnetic main field fluctuations generated by body motion. In the current report, we examine head motion estimation in multiband resting state functional connectivity MRI (rs-fcMRI) data from the Adolescent Brain and Cognitive Development (ABCD) Study and comparison ‘single-shot’ datasets. We show that respirations contaminate movement estimates in functional MRI and that respiration generates apparent head motion not associated with functional MRI quality reductions. We have developed a novel approach using a band-stop filter that accurately removes these respiratory effects from motion estimates. Subsequently, we demonstrate that utilizing a band-stop filter improves post-processing fMRI data quality. Lastly, we demonstrate the real-time implementation of motion estimate filtering in our FIRMM (Framewise Integrated Real-Time MRI Monitoring) software package.

Original language	English (US)
Article number	116400
Journal	Neuroimage
Volume	208
DOIs	https://doi.org/10.1016/j.neuroimage.2019.116400
State	Published - Mar 2020

Funding

We would like to thank the ABCD MRI image acquisition working group, including BJ Casey and Jonathan Polimeni, for their work in organizing the group and developing the ABCD MRI acquisition protocols, respectively. We would also like to thank the other massive contributions to the ABCD effort by the other PIs and staff (see https://abcdstudy.org/). This work was supported by the National Institutes of Health (grants R01 MH096773 and K99/R00 MH091238 to D.A.F. R01 MH115357 to D.A.F, J.T.N. R01 MH086654, J.T.N. U24 DA04112 to A.D. U01 DA041148 to D.A.F. S.W.F. B.J.N, R44 MH122066 to D.A.F. N.U.F.D. K23 NS088590, K12 TR000448 to N.U.F.D. R00 HD074649 to M.D.T.), the Oregon Clinical and Translational Research Institute (D.A.F), the Bill & Melinda Gates Foundation (D.A.F), the Destafano Innovation Fund (D.A.F.), a OHSU Fellowship for Diversity and Inclusion in Research Program (O.M.-D.), a Tartar Trust Award (O.M.-D.), the OHSU Parkinson Center Pilot Grant Program (O.M.-D.) and a National Library of Medicine Postdoctoral Fellowship (E.F.), the Jacobs Foundation grant 2016121703 (N.U.F.D), the Child Neurology Foundation (N.U.F.D.); the McDonnell Center for Systems Neuroscience (N.U.F.D. B.L.S.); the Mallinckrodt Institute of Radiology grant 14-011 (N.U.F.D.); the Hope Center for Neurological Disorders (N.U.F.D. B.L.S.); and the Kiwanis Neuroscience Research Foundation (N.U.F.D. B.L.S.). We would like to thank the ABCD MRI image acquisition working group, including BJ Casey and Jonathan Polimeni, for their work in organizing the group and developing the ABCD MRI acquisition protocols, respectively. We would also like to thank the other massive contributions to the ABCD effort by the other PIs and staff (see https://abcdstudy.org/ ). This work was supported by the National Institutes of Health (grants R01 MH096773 and K99/R00 MH091238 to D.A.F., R01 MH115357 to D.A.F, J.T.N., R01 MH086654 , J.T.N., U24 DA04112 to A.D., U01 DA041148 to D.A.F., S.W.F., B.J.N, R44 MH122066 to D.A.F., N.U.F.D., K23 NS088590 , K12 TR000448 to N.U.F.D., R00 HD074649 to M.D.T.), the Oregon Clinical and Translational Research Institute (D.A.F), the Bill & Melinda Gates Foundation (D.A.F), the Destafano Innovation Fund (D.A.F.), a OHSU Fellowship for Diversity and Inclusion in Research Program (O.M.-D.), a Tartar Trust Award (O.M.-D.), the OHSU Parkinson Center Pilot Grant Program (O.M.-D.) and a National Library of Medicine Postdoctoral Fellowship (E.F.), the Jacobs Foundation grant 2016121703 (N.U.F.D), the Child Neurology Foundation (N.U.F.D.); the McDonnell Center for Systems Neuroscience (N.U.F.D., B.L.S.); the Mallinckrodt Institute of Radiology grant 14-011 (N.U.F.D.); the Hope Center for Neurological Disorders (N.U.F.D., B.L.S.); and the Kiwanis Neuroscience Research Foundation (N.U.F.D., B.L.S.). Appendix A

ASJC Scopus subject areas

Neurology
Cognitive Neuroscience

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Fair, D. A., Miranda-Dominguez, O., Snyder, A. Z., Perrone, A., Earl, E. A., Van, A. N., Koller, J. M., Feczko, E., Tisdall, M. D., van der Kouwe, A., Klein, R. L., Mirro, A. E., Hampton, J. M., Adeyemo, B., Laumann, T. O., Gratton, C., Greene, D. J., Schlaggar, B. L., Hagler, D. J., ... Dosenbach, N. U. F. (2020). Correction of respiratory artifacts in MRI head motion estimates. Neuroimage, 208, Article 116400. https://doi.org/10.1016/j.neuroimage.2019.116400

@article{ec0925bdd13140f691610bc306843577,

title = "Correction of respiratory artifacts in MRI head motion estimates",

abstract = "Head motion represents one of the greatest technical obstacles in magnetic resonance imaging (MRI) of the human brain. Accurate detection of artifacts induced by head motion requires precise estimation of movement. However, head motion estimates may be corrupted by artifacts due to magnetic main field fluctuations generated by body motion. In the current report, we examine head motion estimation in multiband resting state functional connectivity MRI (rs-fcMRI) data from the Adolescent Brain and Cognitive Development (ABCD) Study and comparison {\textquoteleft}single-shot{\textquoteright} datasets. We show that respirations contaminate movement estimates in functional MRI and that respiration generates apparent head motion not associated with functional MRI quality reductions. We have developed a novel approach using a band-stop filter that accurately removes these respiratory effects from motion estimates. Subsequently, we demonstrate that utilizing a band-stop filter improves post-processing fMRI data quality. Lastly, we demonstrate the real-time implementation of motion estimate filtering in our FIRMM (Framewise Integrated Real-Time MRI Monitoring) software package.",

author = "Fair, {Damien A.} and Oscar Miranda-Dominguez and Snyder, {Abraham Z.} and Anders Perrone and Earl, {Eric A.} and Van, {Andrew N.} and Koller, {Jonathan M.} and Eric Feczko and Tisdall, {M. Dylan} and {van der Kouwe}, Andre and Klein, {Rachel L.} and Mirro, {Amy E.} and Hampton, {Jacqueline M.} and Babatunde Adeyemo and Laumann, {Timothy O.} and Caterina Gratton and Greene, {Deanna J.} and Schlaggar, {Bradley L.} and Hagler, {Donald J.} and Richard Watts and Hugh Garavan and Barch, {Deanna M.} and Nigg, {Joel T.} and Petersen, {Steven E.} and Dale, {Anders M.} and Feldstein-Ewing, {Sarah W.} and Nagel, {Bonnie J.} and Dosenbach, {Nico U.F.}",

note = "Publisher Copyright: {\textcopyright} 2019 The Authors",

year = "2020",

month = mar,

doi = "10.1016/j.neuroimage.2019.116400",

language = "English (US)",

volume = "208",

journal = "Neuroimage",

issn = "1053-8119",

publisher = "Academic Press Inc.",

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Fair, DA, Miranda-Dominguez, O, Snyder, AZ, Perrone, A, Earl, EA, Van, AN, Koller, JM, Feczko, E, Tisdall, MD, van der Kouwe, A, Klein, RL, Mirro, AE, Hampton, JM, Adeyemo, B, Laumann, TO, Gratton, C, Greene, DJ, Schlaggar, BL, Hagler, DJ, Watts, R, Garavan, H, Barch, DM, Nigg, JT, Petersen, SE, Dale, AM, Feldstein-Ewing, SW, Nagel, BJ & Dosenbach, NUF 2020, 'Correction of respiratory artifacts in MRI head motion estimates', Neuroimage, vol. 208, 116400. https://doi.org/10.1016/j.neuroimage.2019.116400

TY - JOUR

T1 - Correction of respiratory artifacts in MRI head motion estimates

AU - Fair, Damien A.

AU - Miranda-Dominguez, Oscar

AU - Snyder, Abraham Z.

AU - Perrone, Anders

AU - Earl, Eric A.

AU - Van, Andrew N.

AU - Koller, Jonathan M.

AU - Feczko, Eric

AU - Tisdall, M. Dylan

AU - van der Kouwe, Andre

AU - Klein, Rachel L.

AU - Mirro, Amy E.

AU - Hampton, Jacqueline M.

AU - Adeyemo, Babatunde

AU - Laumann, Timothy O.

AU - Gratton, Caterina

AU - Greene, Deanna J.

AU - Schlaggar, Bradley L.

AU - Hagler, Donald J.

AU - Watts, Richard

AU - Garavan, Hugh

AU - Barch, Deanna M.

AU - Nigg, Joel T.

AU - Petersen, Steven E.

AU - Dale, Anders M.

AU - Feldstein-Ewing, Sarah W.

AU - Nagel, Bonnie J.

AU - Dosenbach, Nico U.F.

PY - 2020/3

Y1 - 2020/3

N2 - Head motion represents one of the greatest technical obstacles in magnetic resonance imaging (MRI) of the human brain. Accurate detection of artifacts induced by head motion requires precise estimation of movement. However, head motion estimates may be corrupted by artifacts due to magnetic main field fluctuations generated by body motion. In the current report, we examine head motion estimation in multiband resting state functional connectivity MRI (rs-fcMRI) data from the Adolescent Brain and Cognitive Development (ABCD) Study and comparison ‘single-shot’ datasets. We show that respirations contaminate movement estimates in functional MRI and that respiration generates apparent head motion not associated with functional MRI quality reductions. We have developed a novel approach using a band-stop filter that accurately removes these respiratory effects from motion estimates. Subsequently, we demonstrate that utilizing a band-stop filter improves post-processing fMRI data quality. Lastly, we demonstrate the real-time implementation of motion estimate filtering in our FIRMM (Framewise Integrated Real-Time MRI Monitoring) software package.

AB - Head motion represents one of the greatest technical obstacles in magnetic resonance imaging (MRI) of the human brain. Accurate detection of artifacts induced by head motion requires precise estimation of movement. However, head motion estimates may be corrupted by artifacts due to magnetic main field fluctuations generated by body motion. In the current report, we examine head motion estimation in multiband resting state functional connectivity MRI (rs-fcMRI) data from the Adolescent Brain and Cognitive Development (ABCD) Study and comparison ‘single-shot’ datasets. We show that respirations contaminate movement estimates in functional MRI and that respiration generates apparent head motion not associated with functional MRI quality reductions. We have developed a novel approach using a band-stop filter that accurately removes these respiratory effects from motion estimates. Subsequently, we demonstrate that utilizing a band-stop filter improves post-processing fMRI data quality. Lastly, we demonstrate the real-time implementation of motion estimate filtering in our FIRMM (Framewise Integrated Real-Time MRI Monitoring) software package.

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DO - 10.1016/j.neuroimage.2019.116400

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SN - 1053-8119

VL - 208

JO - Neuroimage

JF - Neuroimage

M1 - 116400

ER -

Correction of respiratory artifacts in MRI head motion estimates

Abstract

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ASJC Scopus subject areas

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