Correlative 3D x-ray fluorescence and ptychographic tomography of frozen-hydrated green algae

Junjing Deng, Yuan Hung Lo, Marcus Gallagher-Jones, Si Chen, Alan Pryor, Qiaoling Jin, Young Pyo Hong, Youssef S.G. Nashed, Stefan Vogt, Jianwei Miao*, Chris Jacobsen

*Corresponding author for this work

Research output: Contribution to journalArticlepeer-review

82 Scopus citations


Accurate knowledge of elemental distributions within biological organisms is critical for understanding their cellular roles. The ability to couple this knowledge with overall cellular architecture in three dimensions (3D) deepens our understanding of cellular chemistry. Using a whole, frozen-hydrated Chlamydomonas reinhardtii cell as an example, we report the development of 3D correlative microscopy through a combination of simultaneous cryogenic x-ray ptychography and x-ray fluorescence microscopy. By taking advantage of a recently developed tomographic reconstruction algorithm, termed GENeralized Fourier Iterative REconstruction (GENFIRE), we produce high-quality 3D maps of the unlabeled alga's cellular ultrastructure and elemental distributions within the cell. We demonstrate GENFIRE's ability to outperform conventional tomography algorithms and to further improve the reconstruction quality by refining the experimentally intended tomographic angles. As this method continues to advance with brighter coherent light sources and more efficient data handling, we expect correlative 3D x-ray fluorescence and ptychographic tomography to be a powerful tool for probing a wide range of frozen-hydrated biological specimens, ranging from small prokaryotes such as bacteria, algae, and parasites to large eukaryotes such as mammalian cells, with applications that include understanding cellular responses to environmental stimuli and cell-to-cell interactions.

Original languageEnglish (US)
Article numbereaau4548
JournalScience Advances
Issue number11
StatePublished - Nov 2 2018

ASJC Scopus subject areas

  • General


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