TY - JOUR
T1 - Deep generative molecular design reshapes drug discovery
AU - Zeng, Xiangxiang
AU - Wang, Fei
AU - Luo, Yuan
AU - Kang, Seung gu
AU - Tang, Jian
AU - Lightstone, Felice C.
AU - Fang, Evandro F.
AU - Cornell, Wendy
AU - Nussinov, Ruth
AU - Cheng, Feixiong
N1 - Funding Information:
This project has been funded in whole or in part with federal funds from the National Cancer Institute, National Institutes of Health, under contract number HHSN261201500003I (to R.N.). This research was supported (in part) by the Intramural Research Program of the NIH, National Cancer Institute, and Center for Cancer Research to R.N. This project was supported by the IBM-Cleveland Clinic Accelerator Initiative to F.C. and W.C. F.C. conceived the manuscript. X.Z. F.C. F.W. J.T. F.C.L. S.K. W.C. and E.F.F. contributed to critical discussion. X.Z. drafted the manuscript. X.Z. F.C. Y.L. S.K, W.C. and R.N. critically revised the manuscript. E.F.F. has a CRADA arrangement with ChromaDex (USA) and is consultant to Aladdin Healthcare Technologies (UK and Germany), the Vancouver Dementia Prevention Centre (Canada), Intellectual Labs (Norway), and MindRank AI (China). The content of this publication does not necessarily reflect the views or policies of the Department of Health and Human Services, nor does mention of trade names, commercial products, or organizations imply endorsement by the US Government. S.K. and W.C. are employees of IBM TJ Watson Research Center. The other authors declare no competing interests.
Funding Information:
This project has been funded in whole or in part with federal funds from the National Cancer Institute , National Institutes of Health , under contract number HHSN261201500003I (to R.N.). This research was supported (in part) by the Intramural Research Program of the NIH, National Cancer Institute, and Center for Cancer Research to R.N . This project was supported by the IBM-Cleveland Clinic Accelerator Initiative to F.C. and W.C .
Publisher Copyright:
© 2022 The Author(s)
PY - 2022/12/20
Y1 - 2022/12/20
N2 - Recent advances and accomplishments of artificial intelligence (AI) and deep generative models have established their usefulness in medicinal applications, especially in drug discovery and development. To correctly apply AI, the developer and user face questions such as which protocols to consider, which factors to scrutinize, and how the deep generative models can integrate the relevant disciplines. This review summarizes classical and newly developed AI approaches, providing an updated and accessible guide to the broad computational drug discovery and development community. We introduce deep generative models from different standpoints and describe the theoretical frameworks for representing chemical and biological structures and their applications. We discuss the data and technical challenges and highlight future directions of multimodal deep generative models for accelerating drug discovery.
AB - Recent advances and accomplishments of artificial intelligence (AI) and deep generative models have established their usefulness in medicinal applications, especially in drug discovery and development. To correctly apply AI, the developer and user face questions such as which protocols to consider, which factors to scrutinize, and how the deep generative models can integrate the relevant disciplines. This review summarizes classical and newly developed AI approaches, providing an updated and accessible guide to the broad computational drug discovery and development community. We introduce deep generative models from different standpoints and describe the theoretical frameworks for representing chemical and biological structures and their applications. We discuss the data and technical challenges and highlight future directions of multimodal deep generative models for accelerating drug discovery.
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U2 - 10.1016/j.xcrm.2022.100794
DO - 10.1016/j.xcrm.2022.100794
M3 - Review article
C2 - 36306797
AN - SCOPUS:85143407893
SN - 2666-3791
VL - 3
JO - Cell Reports Medicine
JF - Cell Reports Medicine
IS - 12
M1 - 100794
ER -