TY - GEN
T1 - Deep Learning Method to Detect Plaques in IVOCT Images
AU - Cheimariotis, Grigorios Aris
AU - Riga, Maria
AU - Toutouzas, Konstantinos
AU - Tousoulis, Dimitris
AU - Katsaggelos, Aggelos
AU - Maglaveras, Nikolaos
N1 - Funding Information:
Acknowledgment. This research is funded by the Greek State Scholarships Foundation and European Social Fund.
Publisher Copyright:
© 2020, Springer Nature Switzerland AG.
PY - 2020
Y1 - 2020
N2 - Intravascular Optical Coherence Tomography (IVOCT) is a modality which gives in vivo insight of coronaries’ artery morphology. Thus, it helps diagnosis and prevention of atherosclerosis. About 100–300 cross-sectional OCT images are obtained for each artery. Therefore, it is important to facilitate and objectify the process of detecting regions of interest, which otherwise demand a lot of time and effort from medical experts. We propose a processing pipeline to automatically detect parts of the arterial wall which are not normal and possibly consist of plaque. The first step of the processing is transforming OCT images to polar coordinates and to detect the arterial wall. After binarization of the image and removal of the catheter, the arterial wall is detected in each axial line from the first white pixel to a depth of 80 pixels which is equal to 1.5 mm. Then, the arterial wall is split to orthogonal patches which undergo OCT-specific transformations and are labelled as plaque (4 distinct kinds: fibrous, calcified, lipid and mixed) or normal tissue. OCT-specific transformations include enhancing the more reflective parts of the image and rendering patches independent of the arterial wall curvature. The patches are input to AlexNet which is fine-tuned to learn to classify them. Fine-tuning is performed by retraining an already trained AlexNet with a learning rate which is 20 times larger for the last 3 fully-connected layers than for the initial 5 convolutional layers. 114 cross-sectional images were randomly selected to fine-tune AlexNet while 6 were selected to validate the results. Training accuracy was 100% while validation accuracy was 86%. Drop in validation accuracy rate is attributed mainly to false negatives which concern only calcified plaque. Thus, there is potential in this method especially in detecting the 3 other classes of plaque.
AB - Intravascular Optical Coherence Tomography (IVOCT) is a modality which gives in vivo insight of coronaries’ artery morphology. Thus, it helps diagnosis and prevention of atherosclerosis. About 100–300 cross-sectional OCT images are obtained for each artery. Therefore, it is important to facilitate and objectify the process of detecting regions of interest, which otherwise demand a lot of time and effort from medical experts. We propose a processing pipeline to automatically detect parts of the arterial wall which are not normal and possibly consist of plaque. The first step of the processing is transforming OCT images to polar coordinates and to detect the arterial wall. After binarization of the image and removal of the catheter, the arterial wall is detected in each axial line from the first white pixel to a depth of 80 pixels which is equal to 1.5 mm. Then, the arterial wall is split to orthogonal patches which undergo OCT-specific transformations and are labelled as plaque (4 distinct kinds: fibrous, calcified, lipid and mixed) or normal tissue. OCT-specific transformations include enhancing the more reflective parts of the image and rendering patches independent of the arterial wall curvature. The patches are input to AlexNet which is fine-tuned to learn to classify them. Fine-tuning is performed by retraining an already trained AlexNet with a learning rate which is 20 times larger for the last 3 fully-connected layers than for the initial 5 convolutional layers. 114 cross-sectional images were randomly selected to fine-tune AlexNet while 6 were selected to validate the results. Training accuracy was 100% while validation accuracy was 86%. Drop in validation accuracy rate is attributed mainly to false negatives which concern only calcified plaque. Thus, there is potential in this method especially in detecting the 3 other classes of plaque.
KW - Convolutional Neural Networks
KW - Deep learning
KW - Intravascular OCT
KW - Segmentation
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U2 - 10.1007/978-3-030-30636-6_53
DO - 10.1007/978-3-030-30636-6_53
M3 - Conference contribution
AN - SCOPUS:85075807478
SN - 9783030306359
T3 - IFMBE Proceedings
SP - 389
EP - 395
BT - Future Trends in Biomedical and Health Informatics and Cybersecurity in Medical Devices - Proceedings of the International Conference on Biomedical and Health Informatics, ICBHI 2019
A2 - Lin, Kang-Ping
A2 - Magjarevic, Ratko
A2 - de Carvalho, Paulo
PB - Springer Science and Business Media Deutschland GmbH
T2 - 4th International Conference on Biomedical and Health Informatics, ICBHI 2019
Y2 - 17 April 2019 through 20 April 2019
ER -